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1. Full Text REDD1 deletion prevents dexamethasone-induced skeletal muscle atrophy
by Britto, Florian A and Begue, Gwenaelle and Rossano, Bernadette and Docquier, Aurélie and Vernus, Barbara and Sar, Chamroeun and Ferry, Arnaud and Bonnieu, Anne and Ollendorff, Vincent and Favier, François B
American Journal of Physiology - Endocrinology and Metabolism, ISSN 0193-1849, 12/2014, Volume 307, Issue 11, pp. E983 - E993
REDD1 (regulated in development and DNA damage response 1) has been proposed to inhibit the mechanistic target of rapamycin complex 1 (mTORC1) during in vitro... 
Proline-rich Akt substrate of 40 kDa | Glucocortico-ids | Regulated in development and DNA damage response 1 | Mechanistic target of rapamycin | Protein synthesis | Autophagy | PHYSIOLOGY | autophagy | MECHANISM | proline-rich Akt substrate of 40 kDa | protein synthesis | mechanistic target of rapamycin | HYPOXIA | MTORC1 | GLUCOCORTICOID-RECEPTOR | PROTEIN-DEGRADATION | regulated in development and DNA damage response 1 | ENDOCRINOLOGY & METABOLISM | glucocorticoids | QUALITY-OF-LIFE | S6 KINASE | LC3 LIPIDATION | EXPRESSION | Transcription Factors - physiology | Dexamethasone | Muscular Atrophy - pathology | RNA, Messenger - genetics | Muscular Atrophy - genetics | Muscular Atrophy - chemically induced | Transcription Factors - genetics | RNA, Messenger - biosynthesis | Animals | Feces - chemistry | Proteolysis | Muscle Contraction - physiology | Female | Corticosterone - metabolism | Mice | Muscle, Skeletal - pathology | DNA damage | Muscles | Genetic research | Genetic aspects | Research | Health aspects | Atrophy, Muscular | Life Sciences | Human health and pathology | Endocrinology and metabolism
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2. Full Text Canonical and non-canonical autophagy: Variations on a common theme of self-eating?
by Codogno, Patrice and Mehrpour, Maryam and Proikas-Cezanne, Tassula
Nature Reviews Molecular Cell Biology, ISSN 1471-0072, 01/2012, Volume 13, Issue 1, pp. 7 - 12
The autophagosome is the central organelle in macroautophagy, a vacuolar lysosomal catabolic pathway that degrades cytoplasmic material to fuel starving cells... 
CANCER-CELLS | BIOGENESIS | PATHWAY | BECLIN 1-INDEPENDENT AUTOPHAGY | MACROAUTOPHAGY | LC3 LIPIDATION | MATURATION | PROTEINS | HUMAN WIPI-1 | CELL-DEATH | CELL BIOLOGY | Phagosomes | Physiological aspects | Autophagy (Cytology) | Proteolysis
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3. Full Text Co-mobility of GABARAP and Phosphatidylinositol 4-kinase 2A on cytoplasmic vesicles
by Chen, Yan and Sun, Hui-Qiao and Eichorst, John P and Albanesi, Joseph P and Yin, Helen and Mueller, Joachim D
Biochemistry, ISSN 0006-2960, 7/2018, Volume 57, Issue 26, pp. 3556 - 3559
We previously reported that recruitment of the Type IIA phosphatidylinositol 4-kinase (PI4K2A) to autophagosomes by GABARAP, a member of the Atg8 family of... 
mobility | fluorescence correlation spectroscopy | Brightness | lipidation | membrane trafficking
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4. Full Text EIF5A mediates autophagy via translation of ATG3
by Frankel, Lisa B
Autophagy, ISSN 1554-8627, 07/2018, Volume 14, Issue 7, pp. 1288 - 1289
The core macroautophagy/autophagy machinery consists of a large group of autophagy-related (ATG) proteins, that mediate highly controlled, step-wise execution... 
EIF5A | translation | ATG3 | ribosome | autophagy | lipidation | CELL BIOLOGY
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5. Full Text JB Special Review-Wnt Signaling: Biological Functions and Its Implications in Diseases Differences in the secretion and transport of Wnt proteins
by Takada, Shinji and Fujimori, Sayumi and Shinozuka, Takuma and Takada, Ritsuko and Mii, Yusuke
Journal of Biochemistry, ISSN 0021-924X, 2017, Volume 161, Issue 1, pp. 1 - 7
Heparan sulfate | Extracellular vesicles | Cytoneme | Secretione | Wnt | Lipidation
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6. Full Text ER‐to‐lysosome‐associated degradation of proteasome‐resistant ATZ polymers occurs via receptor‐mediated vesicular transport
by Fregno, Ilaria and Fasana, Elisa and Bergmann, Timothy J and Raimondi, Andrea and Loi, Marisa and Soldà, Tatiana and Galli, Carmela and D'Antuono, Rocco and Morone, Diego and Danieli, Alberto and Paganetti, Paolo and Anken, Eelco and Molinari, Maurizio
The EMBO Journal, ISSN 0261-4189, 09/2018, Volume 37, Issue 17, p. n/a
Maintenance of cellular proteostasis relies on efficient clearance of defective gene products. For misfolded secretory proteins, this involves dislocation from... 
phagy | endolysosomes | to‐lysosome‐associated degradation | proteasome‐resistant aggregates | 3 lipidation | ER-to-lysosome-associated degradation | LC3 lipidation | ER-phagy | proteasome-resistant aggregates | CALNEXIN CYCLE | CELLS | PROTEIN | BIOCHEMISTRY & MOLECULAR BIOLOGY | MECHANISMS | QUALITY-CONTROL | RETICULUM-ASSOCIATED-DEGRADATION | CELL BIOLOGY | MISFOLDED GLYCOPROTEINS | ALPHA-1-ANTITRYPSIN | ENDOPLASMIC-RETICULUM | AUTOPHAGOSOME FORMATION | Ubiquitin | Membrane fusion | Starvation | Traffic | Phagosomes | SNAP receptors | Pharmacology | Calnexin | Cytosol | Autophagy | Dislocations | Degradation | Proteins | Syntaxin | Vesicles | Protein folding | Proteasomes | Polymers | Protein transport | Endoplasmic reticulum | ER‐phagy | ER‐to‐lysosome‐associated degradation | Post-translational Modifications, Proteolysis & Proteomics | Membrane & Intracellular Transport | Autophagy & Cell Death
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7. Full Text Oxidation of Atg3 and Atg7 mediates inhibition of autophagy
by Frudd, Karen and Burgoyne, Thomas and Burgoyne, Joseph Robert
Nature Communications, ISSN 2041-1723, 12/2018, Volume 9, Issue 1, pp. 95 - 15
Macroautophagy (autophagy) is a crucial cellular stress response for degrading defective macromolecules and organelles, as well as providing bioenergetic... 
APOPTOSIS | OXIDANT-INDUCED ACTIVATION | MEMBRANE | MULTIDISCIPLINARY SCIENCES | BIOLOGY | HYDROGEN-PEROXIDE | STARVATION | STRESS | LIPIDATION | CONJUGATION SYSTEM | CELL-DEATH | Microtubule-Associated Proteins - chemistry | Microtubule-Associated Proteins - metabolism | Autophagy-Related Protein 7 - metabolism | Humans | Male | Autophagy-Related Protein 7 - chemistry | Aorta - metabolism | Autophagy - drug effects | Autophagy-Related Proteins - chemistry | Ubiquitin-Conjugating Enzymes - chemistry | Autophagosomes - drug effects | HEK293 Cells | Sulfhydryl Compounds - chemistry | Myocytes, Smooth Muscle - drug effects | Myocytes, Smooth Muscle - cytology | Myocytes, Smooth Muscle - metabolism | Oxidation-Reduction | Aorta - drug effects | Mice, Inbred C57BL | Hydrogen Peroxide - pharmacology | Rats | Autophagosomes - metabolism | Animals | Ubiquitin-Conjugating Enzymes - metabolism | Aorta - cytology | Phosphatidylethanolamines - metabolism | Primary Cell Culture | Autophagy-Related Proteins - metabolism | Phosphatidylethanolamines - chemistry | Aging - metabolism | Phosphatidylethanolamine | Deprivation | Thiols | Macromolecules | Organelles | Autophagy | Substrates | Intermediates | Proteins | Aging | Aorta | Hypoxia | Oxidation | Catalysis | Phagocytosis | Cellular stress response
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8. Full Text APOE epsilon 4: The most prevalent yet understudied risk factor for Alzheimer's disease
by Michaelson, DM
ALZHEIMERS & DEMENTIA, ISSN 1552-5260, 11/2014, Volume 10, Issue 6, pp. 861 - 868
Brain pathology of Alzheimer's diseases (AD) and the genetics of autosomal dominant familial AD have been the "lamp posts" under which the AD field has been... 
ALLELE | Therapy | Lipidation | DEPOSITION | ApoE4 | CLINICAL NEUROLOGY | APOLIPOPROTEIN-E | GENETIC RISK | Immunotherapy | AMYLOID-BETA | COLOCALIZATION | MOUSE MODEL | A-BETA | Alzheimer's disease | ASSOCIATION | ONSET
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9. Full Text A reversible phospho-switch mediated by ULK1 regulates the activity of autophagy protease ATG4B
by Pengo, N and Agrotis, A and Prak, K and Jones, J and Ketteler, R
Nature Communications, ISSN 2041-1723, 12/2017, Volume 8, Issue 1, p. 294
Upon induction of autophagy, the ubiquitin-like protein LC3 is conjugated to phosphatidylethanolamine (PE) on the inner and outer membrane of autophagosomes to... 
INHIBITION | BIOGENESIS | MECHANISM | PHOSPHORYLATION | MULTIDISCIPLINARY SCIENCES | KINASE | MEMBRANES | IDENTIFICATION | MATURATION | LC3 | LIPIDATION | Amino Acid Sequence | Phosphorylation | Microtubule-Associated Proteins - genetics | Microtubule-Associated Proteins - metabolism | Humans | Cells, Cultured | Serine - genetics | Autophagy-Related Protein-1 Homolog - metabolism | Autophagosomes - metabolism | Autophagy | Serine - metabolism | Blotting, Western | Microscopy, Confocal | Animals | Cysteine Endopeptidases - metabolism | Base Sequence | Cysteine Endopeptidases - genetics | HEK293 Cells | Protein Phosphatase 2 - metabolism | Mice | HeLa Cells | Autophagy-Related Protein-1 Homolog - genetics | Autophagy-Related Proteins - genetics | Autophagy-Related Proteins - metabolism | Dephosphorylation | Protease | Proteinase | Phagocytosis
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10. Full Text Atg4 recycles inappropriately lipidated Atg8 to promote autophagosome biogenesis
by Nakatogawa, Hitoshi and Ishii, Junko and Asai, Eri and Ohsumi, Yoshinori
Autophagy, ISSN 1554-8627, 02/2012, Volume 8, Issue 2, pp. 177 - 186
Atg8 is a ubiquitin-like protein required for autophagy in the budding yeast Saccharomyces cerevisiae. A ubiquitin-like system mediates the conjugation of the... 
cysteine protease | delipidation | deconjugation | autophagy | ubiquitin-like protein | lipidation | Binding | Proteins | Landes | Calcium | Bioscience | Biology | Cell | Cycle | Cancer | Organogenesis | Deconjugation | Delipidation | Cysteine protease | Lipidation | Autophagy | Ubiquitin-like protein | COMPLEX | VACUOLE TARGETING PATHWAY | MECHANISMS | SACCHAROMYCES-CEREVISIAE | CELL BIOLOGY | YEAST | PROTEIN LIPIDATION | IN-VIVO | CYTOPLASM | ENDOPLASMIC-RETICULUM | RECONSTITUTION | Autophagy-Related Proteins | Microtubule-Associated Proteins - genetics | Microtubule-Associated Proteins - metabolism | Saccharomyces cerevisiae - genetics | Phagosomes - metabolism | Endoplasmic Reticulum - metabolism | Saccharomyces cerevisiae - ultrastructure | Saccharomyces cerevisiae Proteins - genetics | Mutation - genetics | Protein Transport | Saccharomyces cerevisiae - cytology | Saccharomyces cerevisiae - metabolism | Autophagy-Related Protein 8 Family | Endocytosis | Saccharomyces cerevisiae Proteins - metabolism | Protein Binding | Vacuoles - metabolism | Phagosomes - ultrastructure | Phosphatidylethanolamines - metabolism | Intracellular Membranes - metabolism
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11. Full Text Dynamics and diversity in autophagy mechanisms: lessons from yeast
by Ohsumi, Yoshinori and Nakatogawa, Hitoshi and Suzuki, Kuninori and Kamada, Yoshiaki
Nature Reviews Molecular Cell Biology, ISSN 1471-0072, 07/2009, Volume 10, Issue 7, pp. 458 - 467
Autophagy is a fundamental function of eukaryotic cells and is well conserved from yeast to humans. The most remarkable feature of autophagy is the synthesis... 
PHOSPHATIDYLINOSITOL 3-PHOSPHATE | PROTEIN LIPIDATION | MEMBRANE RECRUITMENT | SORTING MECHANISM | VESICLE FORMATION | VACUOLE TARGETING PATHWAY | IN-VITRO RECONSTITUTION | SACCHAROMYCES-CEREVISIAE | SELECTIVE AUTOPHAGY | CONJUGATION SYSTEM | CELL BIOLOGY | Protein Kinases - metabolism | Saccharomyces cerevisiae - cytology | Autophagy-Related Proteins | Animals | Humans | Phagosomes - metabolism | Saccharomyces cerevisiae Proteins - metabolism | Ubiquitin - metabolism | Saccharomyces cerevisiae - enzymology | Phosphatidylinositol 3-Kinases - metabolism | Autophagy | Physiological aspects | Eukaryotes | Genetic aspects | Research | Yeast fungi | Genes
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12. Full Text Toward the function of mammalian ATG12-ATG5-ATG16L1 complex in autophagy and related processes
by Lystad, Alf Håkon and Carlsson, Sven R and Simonsen, Anne
Autophagy, ISSN 1554-8627, 08/2019, Volume 15, Issue 8, pp. 1485 - 1486
The machinery that decorates autophagic membranes with lipid-conjugated LC3/GABARAP is not yet fully understood. We recently reported the purification of the... 
endosome | autophagy | membrane | ATG16L1 | lipidation | LAP | Amphipathic helix | LC3 | GABARAP | CELL BIOLOGY
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13. Full Text Lipids and their (un)known effects on ER-associated protein degradation (ERAD)
by Goder, Veit and Alanis-Dominguez, Enrique and Bustamante-Sequeiros, Mar
Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids, ISSN 1388-1981, 2019
Endoplasmic reticulum (ER)-associated protein degradation (ERAD) is a conserved cellular process that apart from protein quality control and maintenance of ER... 
ERAD | Unsaturated fatty acids | Lipoproteins | Sterols | Protein lipidation | ER membrane lipid composition
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14. Full Text A role for Atg8-PE deconjugation in autophagosome biogenesis
by Nair, U and Yen, WL and Mari, M and Cao, Y and Xie, ZP and Baba, M and Reggiori, F and Klionsky, DJ
AUTOPHAGY, ISSN 1554-8627, 05/2012, Volume 8, Issue 5, pp. 780 - 793
Formation of the autophagosome is likely the most complex step of macroautophagy, and indeed it is the morphological and functional hallmark of this process;... 
YEAST | CONJUGATION | PROTEIN LIPIDATION | MONITORING AUTOPHAGY | CYTOPLASM | VACUOLE TARGETING PATHWAY | UNCONVENTIONAL SECRETION | SACCHAROMYCES-CEREVISIAE | GABARAP | SECRETORY PATHWAY | CELL BIOLOGY
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15. Full Text Chloroquine inhibits autophagic flux by decreasing autophagosome-lysosome fusion
by Mauthe, Mario and Orhon, Idil and Rocchi, Cecilia and Zhou, Xingdong and Luhr, Morten and Hijlkema, Kerst-Jan and Coppes, Robert P and Engedal, Nikolai and Mari, Muriel and Reggiori, Fulvio
Autophagy, ISSN 1554-8627, 08/2018, Volume 14, Issue 8, pp. 1435 - 1455
Macroautophagy/autophagy is a conserved transport pathway where targeted structures are sequestered by phagophores, which mature into autophagosomes, and then... 
fusion | lysosomal degradation | bafilomycin A | degradative compartments | Golgi | lysosomal inhibitors | Autophagy | CANCER-CELLS | INTRALYSOSOMAL PH | PERITONEAL-MACROPHAGES | ISOLATED RAT HEPATOCYTES | CELL BIOLOGY | GROWTH-FACTOR RECEPTOR | MANNOSE 6-PHOSPHATE RECEPTOR | NONSELECTIVE AUTOPHAGY | LC3 LIPIDATION | INTEGRAL MEMBRANE-PROTEIN | SELF-DIGESTION
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16. Full Text LC3 and GATE-16/GABARAP subfamilies are both essential yet act differently in autophagosome biogenesis
by Elazar, Zvulun and Weidberg, Hilla and Shimron, Frida and Shinder, Vera and Shpilka, Tomer and Shvets, Elena
The EMBO Journal, ISSN 0261-4189, 06/2010, Volume 29, Issue 11, pp. 1792 - 1802
Autophagy, a critical process for bulk degradation of proteins and organelles, requires conjugation of Atg8 proteins to phosphatidylethanolamine on the... 
autophagy | Atg8 | LC3 | GATE‐16 | GABARAP | GATE-16 | Autophagy | PROTEIN | MEMBRANE | BIOCHEMISTRY & MOLECULAR BIOLOGY | P62/SQSTM1 | CELL-DEATH | CELL BIOLOGY | TRANSPORT MODULATOR | GOLGI TRANSPORT | ENDOPLASMIC-RETICULUM | LIPIDATION | Lysosomes - metabolism | Proteins - metabolism | Phosphatidylethanolamines - metabolism | Humans | Proteins | Membranes | Cellular biology | Molecular biology | Mammals
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