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1. Full Text Pyrosequencing reveals unique microbial signatures associated with healthy and failing dental implants
by Kumar, Purnima S and Mason, Matthew R and Brooker, Michael R and O'Brien, Kelly
Journal of Clinical Periodontology, ISSN 0303-6979, 05/2012, Volume 39, Issue 5, pp. 425 - 433
Aim: Although it is established that peri-implantitis is a bacterially induced disease, little is known about the bacterial profile of peri-implant communities... 
peri‐implantitis | pyrosequencing | bacteria | DNA | periodontitis | dental implant | 16S periodontitis | peri-implantitis | GEN. NOV | SEQUENCE-ANALYSIS | PROFILES | BIOFILM | PERIODONTITIS | BACTERIAL DIVERSITY | DENTISTRY, ORAL SURGERY & MEDICINE | MECHANICAL NONSURGICAL TREATMENT | PARTIALLY EDENTULOUS PATIENTS | PATHOGENS | Actinomyces - classification | Periodontitis - microbiology | Humans | Dental Implants - microbiology | Male | Peri-Implantitis - microbiology | Propionibacterium - classification | Butyrivibrio - classification | Lactobacillus - classification | Dental Plaque - microbiology | Streptococcus - classification | Metagenome - genetics | Adult | Female | Campylobacter - classification | Prevotella - classification | Lactococcus - classification | Selenomonas - classification | Bacterial Load | Dental Restoration Failure | Sequence Analysis, DNA | Peptococcus - classification | Eubacterium - classification | Treponema - classification | DNA, Bacterial - genetics | RNA, Ribosomal, 16S - genetics | Mycoplasma - classification | Biofilms - classification | Leptotrichia - classification | Transplants & implants | Biofilms | Index Medicus | Dentistry | Bacteria
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2. Full Text Effect of air classification and fermentation by Lactobacillus plantarum VTT E-133328 on faba bean (Vicia faba L.) flour nutritional properties
by Coda, Rossana and Melama, Leena and Rizzello, Carlo Giuseppe and Curiel, José Antonio and Sibakov, Juhani and Holopainen, Ulla and Pulkkinen, Marjo and Sozer, Nesli
International Journal of Food Microbiology, ISSN 0168-1605, 01/2015, Volume 193, pp. 34 - 42
The effects of air classification and lactic acid bacteria fermentation on the reduction of anti-nutritional factors (vicine and convicine, trypsin inhibitor... 
Lactic acid bacteria | Faba bean | Antinutritional factors | Air classification | FOOD SCIENCE & TECHNOLOGY | PROCESSING METHODS | PHASEOLUS-VULGARIS L | MICROBIOLOGY | PROTEIN DIGESTIBILITY | PEA | BREAD | WHEAT-FLOUR | LACTIC-ACID BACTERIA | STARCH | PHYTIC ACID | Phytic Acid - analysis | Air - analysis | gamma-Aminobutyric Acid - metabolism | Lactobacillus plantarum - metabolism | Amino Acids - analysis | Starch - metabolism | Glucosides - analysis | Fermentation | Food Microbiology | Flour - analysis | Starch - chemistry | Lactobacillus plantarum - growth & development | Pyrimidinones - analysis | Vicia faba - microbiology | Lactobacillaceae - metabolism | Phosphates | Hydrolysis | Legumes | Beans | Analysis | GABA | Mimosaceae | Index Medicus
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3. Full Text Using high throughput sequencing to explore the biodiversity in oral bacterial communities
by Diaz, P.I and Dupuy, A.K and Abusleme, L and Reese, B and Obergfell, C and Choquette, L and Dongari‐Bagtzoglou, A and Peterson, D.E and Terzi, E and Strausbaugh, L.D
Molecular Oral Microbiology, ISSN 2041-1006, 06/2012, Volume 27, Issue 3, pp. 182 - 201
High throughput sequencing of 16S ribosomal RNA gene amplicons is a cost‐effective method for characterization of oral bacterial communities. However, before... 
oral biodiversity | 454‐pyrosequencing | microbial communities | biogeography | Biogeography | 454-pyrosequencing | Microbial communities | Oral biodiversity | SUBGINGIVAL PLAQUE | CAVITY | FLORA | MICROBIOLOGY | WRINKLES | RARE BIOSPHERE | PROPORTIONS | DISEASES | MICROBIAL DIVERSITY | GUT MICROBIOME | DENTISTRY, ORAL SURGERY & MEDICINE | SURFACES | Actinomyces - classification | Mouth Mucosa - microbiology | Streptococcus mitis - classification | Bias | Fusobacterium nucleatum - classification | Humans | RNA, Ribosomal, 16S - analysis | Streptococcus oralis - classification | Biodiversity | Bacteria - genetics | RNA, Bacterial - analysis | Streptococcus mutans - classification | Young Adult | Lactobacillus casei - classification | Metagenome - genetics | Veillonella - classification | Sequence Analysis, RNA | Staphylococcaceae - classification | Mouth - microbiology | Bacteria - classification | Saliva - microbiology | DNA, Bacterial - analysis | High-Throughput Nucleotide Sequencing - methods | Porphyromonas gingivalis - classification | Buccal mucosa | Community structure | Economics | rRNA 16S | Taxonomy | Abundance | Data processing | Biological diversity | Primers | DNA | Saliva | Dentistry
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4. Full Text Use of microbial indicators combined with environmental factors coupled with metrology tools for discrimination and classification of Luzhou‐flavoured pit muds
by Zhang, Q.Y and Yuan, Y.J and Liao, Z.M and Zhang, W.X
Journal of Applied Microbiology, ISSN 1364-5072, 10/2017, Volume 123, Issue 4, pp. 933 - 943
AimsPit mud is essential for the quality and yield of Chinese Luzhou-flavoured liquor. A reliable and fast method based on the use of microbial indicators... 
microbial indicator | qPCR | environmental factor | pit mud | metrology tool | QUANTIFICATION | CLOSTRIDIUM-KLUYVERI | MICROBIOLOGY | IDENTIFICATION | MASS-SPECTROMETRY | METABOLOMICS | COMMUNITY | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BACTERIAL DIVERSITY | BACILLUS-CEREUS | CAPROIC ACID | LIQUOR | Lactobacillus - genetics | Bacillus - metabolism | Humans | Flavoring Agents | Firmicutes - genetics | Methanomicrobiales - metabolism | Bacillus - isolation & purification | Methanosarcina - genetics | Actinobacteria - genetics | Methanomicrobiales - isolation & purification | Actinobacteria - metabolism | Methanomicrobiales - genetics | Actinobacteria - isolation & purification | Firmicutes - metabolism | Bacteroidetes - isolation & purification | Firmicutes - isolation & purification | Bacillus - genetics | Fermentation | Lactobacillus - metabolism | Methanosarcina - isolation & purification | Methanomicrobiaceae - genetics | Bacteroidetes - metabolism | Alcoholic Beverages - microbiology | Methanosarcina - metabolism | Taste | Methanomicrobiaceae - isolation & purification | Bacteroidetes - genetics | Lactobacillus - isolation & purification | Hydrogen-Ion Concentration | Methanomicrobiaceae - metabolism | Ammonia | Usage | Indicators (Biology) | Microbiology | Principal components analysis | Liquor | Environmental factors | Nitrogen | pH effects | Quality standards | Microorganisms | Acids | Hydrogen ions | Moisture content | Sensory evaluation | Classification | Indicators | Mud | Index Medicus
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5. Full Text RNA‐oligonucleotide quantification technique (ROQT) for the enumeration of uncultivated bacterial species in subgingival biofilms
by Teles, F.R.F and Teles, R.P and Siegelin, Y and Paster, B and Haffajee, A.D and Socransky, S.S
Molecular Oral Microbiology, ISSN 2041-1006, 04/2011, Volume 26, Issue 2, pp. 127 - 139
Approximately 35% of the species present in subgingival biofilms are as yet uncultivated, so their role in periodontal pathogenesis is unknown. The aim of the... 
quantification | bacteria | oral | periodontal | uncultivated | biofilms | oligonucleotide | Periodontal | Biofilms | Quantification | Bacteria | Oligonucleotide | Oral | Uncultivated | PORPHYROMONAS-GINGIVALIS | MICROBIOLOGY | MICROBIOTA | HEALTHY | PLAQUE | MICROORGANISMS | POLYMERASE-CHAIN-REACTION | DNA-DNA HYBRIDIZATION | TANNERELLA-FORSYTHENSIS | PERIODONTITIS | DENTISTRY, ORAL SURGERY & MEDICINE | DIVERSITY | Actinomyces - classification | Periodontitis - microbiology | Species Specificity | Humans | Luminescence | Digoxigenin | Gram-Positive Bacteria - genetics | Lactobacillus - classification | Dental Plaque - microbiology | Streptococcus - classification | Bacteroidaceae - classification | Gram-Negative Bacteria - genetics | Campylobacter - classification | Prevotella - classification | DNA Probes | Nucleic Acid Hybridization | Staphylococcus - classification | Fusobacterium nucleatum - classification | Deltaproteobacteria - classification | Bacterial Load | Pilot Projects | DNA, Bacterial - genetics | Aptamers, Nucleotide | Gram-Positive Bacteria - classification | Haemophilus - classification | RNA, Ribosomal, 16S - genetics | Biofilms - classification | Gingiva - microbiology | Gram-Negative Bacteria - classification | Porphyromonas gingivalis - classification | Electronic cameras | Nucleic acids | Molecular genetics | Methods | Dentistry | FliM protein | Periodontal diseases | Periodontitis | Oligonucleotides | Cameras | nucleic acids | Probes | Pure culture | Plaques
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6. Full Text Microbial communities from 20 different hydrogen-producing reactors studied by 454 pyrosequencing
by Etchebehere, Claudia and Castelló, Elena and Wenzel, Jorge and del Pilar Anzola-Rojas, Mélida and Borzacconi, Liliana and Buitrón, Germán and Cabrol, Lea and Carminato, Vivian María and Carrillo-Reyes, Julian and Cisneros-Pérez, Crhistian and Fuentes, Laura and Moreno-Andrade, Iván and Razo-Flores, Elías and Filippi, Gonzalo Ruiz and Tapia-Venegas, Estela and Toledo-Alarcón, Javiera and Zaiat, Marcelo
Applied Microbiology and Biotechnology, ISSN 0175-7598, 4/2016, Volume 100, Issue 7, pp. 3371 - 3384
To provide new insight into the dark fermentation process, a multi-lateral study was performed to study the microbiology of 20 different lab-scale bioreactors... 
Life Sciences | Biotechnology | Microbiology | Biohydrogen | Dark fermentation | Microbial Genetics and Genomics | 454 pyrosequencing | Reactor | Microbial community | ORGANIC LOADING RATE | FOOD WASTE | HYDRAULIC RETENTION TIME | H-2 PRODUCTION | TREATMENT PLANTS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | WASTE-WATER | BACTERIAL COMMUNITIES | BIOHYDROGEN PRODUCTION | CHEESE WHEY | Anaerobiosis | Lactobacillus - genetics | Proteobacteria - metabolism | Veillonellaceae - metabolism | Firmicutes - genetics | Proteobacteria - classification | Proteobacteria - genetics | Latin America | Clostridium - classification | Enterobacter - metabolism | Lactobacillus - classification | Firmicutes - metabolism | Microbial Consortia - genetics | Thermotoga maritima - metabolism | Hydrogen - metabolism | Enterobacter - genetics | Enterobacter - classification | Firmicutes - classification | Thermotoga maritima - genetics | Clostridium - genetics | Fermentation | Lactobacillus - metabolism | Veillonellaceae - classification | Thermotoga maritima - classification | Bioreactors - standards | Veillonellaceae - genetics | RNA, Ribosomal, 16S - genetics | Clostridium - metabolism | High-Throughput Nucleotide Sequencing | Usage | Bioreactors | Genetic aspects | Nucleotide sequencing | Microbial colonies | Methods | DNA sequencing | Studies | Membrane reactors | Hydrogenases | Alternative education | Index Medicus | Microbiology and Parasitology | Environmental Engineering | Biodiversity and Ecology | Bacteriology | Environmental Sciences | Global Changes
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7. Full Text Identification and classification for the Lactobacillus casei group
by Huang, Chien-Hsun and Li, Shiao-Wen and Huang, Lina and Watanabe, Koichi
Frontiers in Microbiology, ISSN 1664-302X, 08/2018, Volume 9, pp. 1974 - 1974
Lactobacillus casei, Lactobacillus paracasei, and Lactobacillus rhamnosus are phenotypically and genotypically closely related, and together comprise the L.... 
Lactobacillus casei group | MALDI-TOF MS | Species-specific PCR | MLSA | Whole genome sequence | MICROBIOLOGY | SP NOV | MULTILOCUS SEQUENCE-ANALYSIS | FLIGHT MASS-SPECTROMETRY | DNA-DNA HYBRIDIZATION | SPECIES-SPECIFIC PRIMERS | DESORPTION IONIZATION-TIME | AD-HOC-COMMITTEE | LACTIC-ACID BACTERIA | whole genome sequence | species-specific PCR | 16S RIBOSOMAL-RNA | Usage | Physiological aspects | Nucleotide sequencing | Research | Identification and classification | Time-of-flight mass spectrometry | DNA sequencing | Lactobacillus
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8. Full Text Composition and predicted metabolic capacity of upper and lower airway microbiota of healthy dogs in relation to the fecal microbiota
by Ericsson, Aaron C and Personett, Alexa R and Grobman, Megan E and Rindt, Hansjorg and Reinero, Carol R
PLoS ONE, ISSN 1932-6203, 05/2016, Volume 11, Issue 5, pp. e0154646 - e0154646
The upper and lower airways of healthy humans are reported to harbor stable and consistent bacterial populations, and the composition of these communities is... 
INFECTIONS | GRAM-NEGATIVE BACTERIA | DATABASE | SURFACTANT PROTEIN-A | PSEUDOMONAS-AERUGINOSA | MULTIDISCIPLINARY SCIENCES | GENES | DIVERSITY | CYSTIC-FIBROSIS | COMMUNITIES | BRONCHOALVEOLAR LAVAGE | Lactobacillus - genetics | Lung - microbiology | Prospective Studies | Gemella - genetics | Propionibacterium acnes - genetics | Proteobacteria - classification | Respiratory System - microbiology | Phylogeny | Propionibacterium acnes - classification | Proteobacteria - genetics | Bronchoalveolar Lavage Fluid - microbiology | Clostridium - classification | Lactobacillus - classification | Feces - microbiology | Porphyromonas - genetics | Female | Riemerella - classification | Gemella - classification | Flavobacterium - classification | Flavobacterium - genetics | Clostridium - genetics | Animals | Microbiota - genetics | Porphyromonas - classification | Dogs | RNA, Ribosomal, 16S - genetics | Riemerella - genetics | Microbiota (Symbiotic organisms) | Physiological aspects | Respiratory tract diseases | Research | Metabolism | Risk factors | Veterinary colleges | Populations | Disease | Laboratories | Communities | Lung | Veterinary medicine | Respiratory tract | Taxa | Microbiota | Bronchoalveolar lavage | Bacteria | Gram-negative bacteria | Feces | Nosocomial infections | Alveoli | Bioinformatics | Species | Deoxyribonucleic acid--DNA | Internal medicine | Bronchus | Cystic fibrosis | Surfactants | Citric acid | Environmental effects | Asthma | Immune systems | Studies | Respiratory diseases | Relative abundance | Metabolic pathways | Diagnostic systems | Nutrient cycles | Index Medicus | Deoxyribonucleic acid | DNA
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9. Full Text Bacterial Biofilm Composition in Caries and Caries-Free Subjects
by Wolff, D and Frese, C and Maier-Kraus, T and Krueger, T and Wolff, B
Caries Research, ISSN 0008-6568, 01/2013, Volume 47, Issue 1, pp. 69 - 77
Background: Certain major pathogens such as Streptococcus mutans, Lactobacillus spp. and others have been reported to be involved in caries initiation and... 
Original Paper | Biofilm | Real-time quantitative polymerase chain reaction | Bacterial species | Plaque | STREPTOCOCCUS-MUTANS | MICROFLORA | Plaque Real-time quantitative polymerase chain reaction | HUMAN CARIOUS DENTIN | EARLY-CHILDHOOD CARIES | PLAQUE | MOLECULAR ANALYSIS | REAL-TIME PCR | ANAEROBES | DENTISTRY, ORAL SURGERY & MEDICINE | INTERFERENCE | LACTOBACILLUS | DMF Index | Cariostatic Agents - therapeutic use | Humans | Parents | Male | Propionibacterium - classification | Fusobacterium - classification | Lactobacillus - classification | Dental Plaque - microbiology | Streptococcus - classification | Fluorides - therapeutic use | Bacteria - classification | Adult | DNA, Bacterial - analysis | Female | Real-Time Polymerase Chain Reaction | Dentin - microbiology | Dental Caries Susceptibility | Dental Caries - microbiology | Capnocytophaga - classification | Dental Plaque Index | DNA Primers | Oral Hygiene | Treponema - classification | Periodontal Index | Biofilms - classification | Cohort Studies | Leptotrichia - classification | Index Medicus | Dentistry
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10. Full Text Classification of lactic acid bacteria with UV-resonance Raman spectroscopy
by Gaus, K and Rösch, P and Petry, R and Peschke, K.-D and Ronneberger, O and Burkhardt, H and Baumann, K and Popp, J
Biopolymers, ISSN 0006-3525, 07/2006, Volume 82, Issue 4, pp. 286 - 290
UV-resonance Raman spectroscopy is applied as a method for the identification of lactic acid bacteria from yogurt. Eight different strains of bacteria from... 
Chemometric methods | Lactic acid bacteria | UV-resonance Raman spectroscopy | Classification | CELLS | BIOPHYSICS | chemometric methods | BIOCHEMISTRY & MOLECULAR BIOLOGY | classification | IDENTIFICATION | lactic acid bacteria | Lactobacillus delbrueckii - chemistry | Streptococcus thermophilus - classification | Spectrum Analysis, Raman - methods | Yogurt - microbiology | Lactobacillus delbrueckii - classification | Principal Component Analysis - methods | Food Microbiology | Discriminant Analysis | Lactobacillus - classification | Lactobacillus acidophilus - classification | Lactobacillus - chemistry | Streptococcus thermophilus - chemistry | Lactobacillus acidophilus - chemistry | Cluster Analysis | Index Medicus
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11. Full Text Characterization of the Vaginal Micro- and Mycobiome in Asymptomatic Reproductive-Age Estonian Women
by Drell, Tiina and Lillsaar, Triin and Tummeleht, Lea and Simm, Jaak and Aaspõllu, Anu and Väin, Edda and Saarma, Ivo and Salumets, Andres and Donders, Gilbert G. G and Metsis, Madis
PLoS ONE, ISSN 1932-6203, 01/2013, Volume 8, Issue 1, pp. e54379 - e54379
The application of high-throughput sequencing methods has raised doubt in the concept of the uniform healthy vaginal microbiota consisting predominantly of... 
TAXONOMY | FUNGI | RIBOSOMAL-RNA SEQUENCES | MOLECULAR-IDENTIFICATION | VAGINITIS | FLORA | MULTIDISCIPLINARY SCIENCES | COMMUNITIES | HEALTH | CANDIDOSIS | BACTERIAL VAGINOSIS | Lactobacillus - genetics | Estonia - epidemiology | Humans | Gardnerella vaginalis - classification | RNA, Ribosomal, 16S - classification | Asymptomatic Diseases | Phylogeny | Lactobacillus - classification | Candida - classification | Metagenome - genetics | Gardnerella vaginalis - genetics | Gardnerella vaginalis - isolation & purification | Polymerase Chain Reaction | Adult | Female | Vaginosis, Bacterial - epidemiology | Candida - genetics | Vaginosis, Bacterial - diagnosis | DNA, Intergenic - genetics | Candida - isolation & purification | Sequence Analysis, DNA | Vaginosis, Bacterial - microbiology | Adolescent | Vaginal Discharge - microbiology | RNA, Ribosomal, 16S - genetics | Vagina - microbiology | DNA, Intergenic - classification | Lactobacillus - isolation & purification | Fungi | Women | Microbiota (Symbiotic organisms) | RNA | Health aspects | Analysis | Reproductive health | rRNA 16S | Communities | Infections | Biology | Family medical history | pH effects | Vaginosis | Species diversity | Microbiota | Microorganisms | Next-generation sequencing | Off odor | Consent | Bacteria | Bioinformatics | Age | Deoxyribonucleic acid--DNA | Community composition | Lactobacilli | Vagina | Data processing | Species composition | Obstetrics | Contamination | Biological diversity | Medicine | Hospitals | Womens health | Spacer | Relative abundance | Air pollution | Index Medicus | Deoxyribonucleic acid | DNA
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