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1. Sequence-selective DNA Binding by Basic Region/Leucine Zipper Proteins at Noncognate Gene Regulatory Sequences
by Chan, I-San
06/2012
This thesis explores how basic region/leucine zipper (bZIP) transcription factors target gene regulatory sequences. The GCN4 bZIP binds to more than one target... 
C/EBP | bZIP | GCN4 | gene regulatory | transcription | 0487 | leucine zipper | basic region | DNA binding
Dissertation
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2. Full Text Arabidopsis Basic Leucine Zipper Proteins That Mediate Stress-Responsive Abscisic Acid Signaling
by Joung-youn Kang and Hyung-in Choi and Min-young Im and Soo Young Kim
The Plant Cell, ISSN 1040-4651, 2/2002, Volume 14, Issue 2, pp. 343 - 357
The phytohormone abscisic acid (ABA) plays an essential role in adaptive stress responses. The hormone regulates, among others, the expression of numerous... 
Leaves | Phenotypes | Plant growth | RNA | Genes | Germination | Gene expression regulation | Plants | Transgenic plants | Plant cells | ABA | PHOSPHATASE 2C | BIOCHEMISTRY & MOLECULAR BIOLOGY | TRANSCRIPTION | TRANSDUCTION | SUGAR | PLANT SCIENCES | CELL BIOLOGY | BZIP PROTEINS | INSENSITIVE MUTANTS | THALIANA L HEYNH | GENE-EXPRESSION | PLANTS | Arabidopsis - growth & development | Sodium Chloride - pharmacology | Water - pharmacology | Plant Roots - drug effects | Adaptation, Physiological - genetics | Plants, Genetically Modified | Plant Leaves - drug effects | Plant Roots - growth & development | Plant Transpiration - drug effects | Arabidopsis - drug effects | Carbohydrates - pharmacology | Signal Transduction | Adaptation, Physiological - physiology | Transcription Factors - genetics | DNA-Binding Proteins - genetics | Leucine Zippers - genetics | Arabidopsis - genetics | Abscisic Acid - pharmacology | Gene Expression Regulation, Plant - drug effects | Phenotype | Plant Leaves - growth & development | Plant Growth Regulators - genetics | Abscisic Acid - genetics | Zinc Fingers - genetics | Basic-Leucine Zipper Transcription Factors | Plant Growth Regulators - pharmacology | G-Box Binding Factors | Genetic aspects | Research | Gene expression | Arabidopsis | Plant hormones
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3. Full Text Occupancies in the DNA-Binding Pathways of Intrinsically Disordered Helix-Loop-Helix Leucine-Zipper Proteins
by Vancraenenbroeck, Renee and Hofmann, Hagen
Journal of Physical Chemistry B, ISSN 1520-6106, 12/2018, Volume 122, Issue 49, pp. 11460 - 11467
Quantifying the stability of intermediates along parallel molecular pathways is often hampered by the limited experimental resolution of ensemble methods. In... 
SINGLE-MOLECULE FRET | SPECIFICITY | MAX | KINETICS | ARC-REPRESSOR | C-MYC | DYNAMICS | CHEMISTRY, PHYSICAL | NETWORKS | INTERNAL-FRICTION | TRANSITIONS
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4. Full Text Regulation of MIR165/166 by class II and class III homeodomain leucine zipper proteins establishes leaf polarity
by Paz Merelo and Hathi Ram and Monica Pia Caggiano and Carolyn Ohno and Felix Ott and Daniel Straub and Moritz Graeff and Seok Keun Cho and Seong Wook Yang and Stephan Wenkel and Marcus G. Heisler
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 10/2016, Volume 113, Issue 42, pp. 11973 - 11978
A defining feature of plant leaves is their flattened shape. This shape depends on an antagonism between the genes that specify adaxial (top) and abaxial... 
Class II HD-ZIP | Organ patterning | Class III HD-ZIP | Leaf morphogenesis | MIR165/166 | TRANSCRIPTION FACTORS | VASCULAR TISSUE | MULTIDISCIPLINARY SCIENCES | class III HD-ZIP | LATERAL ORGANS | class II HD-ZIP | AUXIN | leaf morphogenesis | GENES | ARABIDOPSIS | KANADI | EXPRESSION | PRIMORDIA | organ patterning | MICRORNA | Physiological aspects | Leaves | Transcription factors | Genetic aspects | MicroRNA | Leucine | Biological Sciences | 166 | MIR165
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5. Full Text Arabidopsis thaliana homeobox 12 (ATHB12), a homeodomain-leucine zipper protein, regulates leaf growth by promoting cell expansion and endoreduplication
by Yoon-Sun Hur and Ji-Hyun Um and Sunghan Kim and Kyunga Kim and Hee-Jung Park and Jong-Seok Lim and Woo-Young Kim and Sang Eun Jun and Eun Kyung Yoon and Jun Lim and Masaru Ohme-Takagi and Donggiun Kim and Jongbum Park and Gyung-Tae Kim and Choong-Ill Cheon
New Phytologist, ISSN 0028-646X, 1/2015, Volume 205, Issue 1, pp. 316 - 328
( ), a homeodomain-leucine zipper class I (HD-Zip I) gene, is highly expressed in leaves and stems, and induced by abiotic stresses, but its role in... 
Full papers | Leaves | Cell growth | Leaf development | Plant growth regulators | Epidermal cells | Cell cycle | Plant roots | Plants | Plant cells | Seedlings | homeobox | cell expansion | endoreduplication | Arabidopsis thaliana homeobox 12 (ATHB12) | leaf development | Homeobox | Cell expansion | Endoreduplication | TARGET | SIZE CONTROL | GIBBERELLIN | KNOX GENES | PATTERNS | DIVISION | PLANT SCIENCES | ELONGATION | S6 KINASE | STRESS | EXPRESSION | Arabidopsis - growth & development | Genes, Plant | Homeodomain Proteins - metabolism | Leucine Zippers | Gene Expression Profiling | Plant Roots - drug effects | Arabidopsis Proteins - metabolism | Cell Wall - drug effects | Plants, Genetically Modified | Plant Leaves - drug effects | Phosphorylation - drug effects | Plant Roots - growth & development | DNA, Plant - genetics | Arabidopsis Proteins - genetics | Arabidopsis - cytology | Endoreduplication - drug effects | Cell Wall - genetics | Plant Roots - cytology | Homeodomain Proteins - genetics | Plant Leaves - cytology | Arabidopsis - metabolism | Arabidopsis - genetics | Cell Shape - drug effects | Gene Expression Regulation, Plant - drug effects | Phenotype | Plant Leaves - growth & development | Ploidies | Cell Proliferation - drug effects | Arabidopsis thaliana | DNA binding proteins | Growth | Analysis | Index Medicus
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6. Full Text Proline- and acidic amino acid-rich basic leucine zipper proteins modulate peroxisome proliferator-activated receptor α (PPARα) activity
by Frédéric Gachon and Nicolas Leuenberger and Thierry Claudel and Pascal Gos and Céline Jouffe and Fabienne Fleury Olela and Xavier de Mollerat du Jeu and Walter Wahli and Ueli Schibier and Steven L. McKnight
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 3/2011, Volume 108, Issue 12, pp. 4794 - 4799
In mammals, many aspects of metabolism are under circadian control. At least in part, this regulation is achieved by core-clock or clock-controlled... 
Receptors | Messenger RNA | Liver | Genes | Basic leucine zipper transcription factors | Ligands | Lipids | Mice | Lipid metabolism | Fatty acids | Circadian clock | Nuclear receptors | Liver lipid metabolism | ACYL-COA THIOESTERASES | TRANSCRIPTION FACTORS | METABOLIC SYNDROME | LIPID-METABOLISM | FASTING RESPONSE | MULTIDISCIPLINARY SCIENCES | FATTY-ACIDS | circadian clock | LIPOPROTEIN-LIPASE | nuclear receptors | liver lipid metabolism | GAMMA ACTIVATORS | EXPRESSION | Genome-Wide Association Study | PPAR alpha - biosynthesis | Leucine Zippers | Liver - metabolism | Gene Expression Regulation - physiology | PPAR alpha - genetics | Circadian Rhythm - physiology | Transcription Factors - genetics | Cholesterol - metabolism | Xenobiotics - pharmacokinetics | Xenobiotics - pharmacology | Mice, Knockout | Transcription Factors - metabolism | Palmitoyl-CoA Hydrolase - metabolism | Transcription, Genetic - physiology | Animals | Glucose - metabolism | Palmitoyl-CoA Hydrolase - genetics | Fatty Acids - metabolism | Lipid Metabolism - physiology | Biological Sciences
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7. Full Text N-cadherin regulates p38 MAPK signaling via association with JNK-associated leucine zipper protein: Implications for neurodegeneration in Alzheimer disease
by Ando, Koichi and Uemura, Kengo and Kuzuya, Akira and Maesako, Masato and Asada-Utsugi, Megumi and Kubota, Masakazu and Aoyagi, Nobuhisa and Yoshioka, Katsuji and Okawa, Katsuya and Inoue, Haruhisa and Kawamata, Jun and Shimohama, Shun and Arai, Tetsuaki and Takahashi, Ryosuke and Kinoshita, Ayae
Journal of Biological Chemistry, ISSN 0021-9258, 03/2011, Volume 286, Issue 9, pp. 7619 - 7628
Synaptic loss, which strongly correlates with the decline of cognitive function, is one of the pathological hallmarks of Alzheimer disease. N-cadherin is a... 
SCAFFOLDING PROTEIN | ADHESION | ACTIVATION | NEURITE OUTGROWTH | PATHWAY | AMYLOID-BETA | BIOCHEMISTRY & MOLECULAR BIOLOGY | KINASE | SYNAPSE LOSS | MISSENSE MUTATIONS | PRESENILIN-1 | Phosphorylation - physiology | Neurons - pathology | Cadherins - metabolism | Humans | Middle Aged | Receptors, N-Methyl-D-Aspartate - metabolism | Cercopithecus aethiops | Male | Nerve Degeneration - metabolism | Peptides, Cyclic - metabolism | Alzheimer Disease - pathology | Antigens, CD - metabolism | Leucine Zippers - physiology | HEK293 Cells | Aged, 80 and over | Female | Neurons - metabolism | p38 Mitogen-Activated Protein Kinases - metabolism | Oligopeptides - metabolism | Nerve Degeneration - pathology | Animals | Alzheimer Disease - metabolism | Proteomics | Aged | Mice | Adaptor Proteins, Signal Transducing - metabolism | COS Cells | N-cadherin | Amyloid | Alzheimer Disease | Adhesion | p38 MAPK | Synapses | Cell Biology | JLP
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8. Full Text Human leucine zipper protein promotes hepatic steatosis via induction of apolipoprotein A-IV
by Kang, Minsoo and Kim, Jeonghan and An, Hyoung-Tae and Ko, Jesang
FASEB Journal, ISSN 0892-6638, 06/2017, Volume 31, Issue 6, pp. 2548 - 2561
The molecular mechanism of stress-induced hepatic steatosis is not well known. Human leucine zipper protein (LZIP) regulates the expression of genes involved... 
Akt signaling | Golgi stress | Lipid homeostasis | Phosphorylated LZIP | ACTIVATION | AKT signaling | BIOCHEMISTRY & MOLECULAR BIOLOGY | LUMAN | lipid homeostasis | NONALCOHOLIC STEATOHEPATITIS | ELEMENT-BINDING PROTEINS | CELL BIOLOGY | phosphorylated LZIP | CREB | GENE | BIOLOGY | FATTY LIVER | STRESS | TRANSCRIPTION FACTOR | LIPOPROTEINS | Fatty Liver - genetics | Apolipoproteins A - metabolism | Oleic Acid - metabolism | Phosphorylation | Apolipoproteins A - genetics | Fatty Liver - metabolism | Humans | RNA, Messenger - genetics | Stress, Physiological | Gene Expression Regulation - physiology | Golgi Apparatus - physiology | Hepatocytes - metabolism | RNA, Messenger - metabolism | Hep G2 Cells | Cyclic AMP Response Element-Binding Protein - genetics | Plasmids | Cyclic AMP Response Element-Binding Protein - metabolism | Lipid Metabolism - genetics | Mutation | Proto-Oncogene Proteins c-akt - metabolism | Lipid Metabolism - physiology | Liver | Genes | Lipids | AKT protein | mRNA | Leucine | Tissues | Nuclei | Human tissues | Proteins | Apolipoprotein A | Fatty liver | Proteolysis | Rodents | Lipid metabolism | Stresses | Metabolism | Apolipoproteins | Gene expression | Fatty acids | Stress | Golgi apparatus | Steatosis | Leucine zipper proteins | Cell migration | Metabolic disorders
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9. Full Text Small leucine zipper protein functions as a negative regulator of estrogen receptor α in breast cancer
by Jeong, Juyeon and Park, Sodam and An, Hyoung-Tae and Kang, Minsoo and Ko, Jesang
PLoS ONE, ISSN 1932-6203, 06/2017, Volume 12, Issue 6, p. e0180197
The nuclear transcription factor estrogen receptor α (ERα) plays a critical role in breast cancer progression. ERα acts as an important growth stimulatory... 
Promoter Regions, Genetic | Estrogen Receptor alpha - genetics | MCF-7 Cells | Down-Regulation | Humans | Estrogen Receptor alpha - metabolism | Female | Transcription, Genetic | Cyclic AMP Response Element-Binding Protein - physiology | Breast Neoplasms - metabolism | Binding | Cell proliferation | Glucocorticoids | Androgen receptors | Estrogens | Estrogen | Estrogen receptors | Breast cancer | Biology | Leucine | Gene expression | Nuclear receptors | Vectors (Biology) | Leucine zipper proteins | Proteins | Receptors | Cell growth | Plasmids | Penicillin | Breast | Ligands | Life sciences | Cancer
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10. Full Text A petunia homeodomain-leucine zipper protein, PhHD-Zip, plays an important role in flower senescence
by Chang, Xiaoxiao and Donnelly, Linda and Sun, Daoyang and Rao, Jingping and Reid, Michael S and Jiang, Cai-Zhong
PLoS ONE, ISSN 1932-6203, 02/2014, Volume 9, Issue 2, p. e88320
Flower senescence is initiated by developmental and environmental signals, and regulated by gene transcription. A homeodomain-leucine zipper transcription... 
ARABIDOPSIS-THALIANA | DNA-BINDING | SENESCING PETALS | SHOOT GROWTH | MULTIDISCIPLINARY SCIENCES | GENES | TRANSCRIPTION | ENDOGENOUS ABA | ABSCISIC-ACID | WATER-DEFICIT | ETHYLENE BIOSYNTHESIS | Gene Silencing - drug effects | Homeodomain Proteins - metabolism | Leucine Zippers | Molecular Sequence Data | Gene Expression Profiling | RNA, Messenger - metabolism | Pollination - drug effects | Droughts | Plants, Genetically Modified | Plant Proteins - metabolism | Stress, Physiological - drug effects | Ethylenes - pharmacology | Stress, Physiological - genetics | RNA, Messenger - genetics | Petunia - drug effects | Flowers - growth & development | Homeodomain Proteins - genetics | Petunia - growth & development | Sequence Homology, Amino Acid | Abscisic Acid - pharmacology | Plant Proteins - genetics | Gene Expression Regulation, Plant - drug effects | Genes, Plant - genetics | Models, Biological | Petunia - genetics | Flowers - drug effects | Flowers - genetics | Genes | Ethylene | Amino acids | Genetic aspects | Genetic engineering | Genetic transcription | Flowers | DNA binding proteins | Senescence | Transcription factors | Seeds | Horticulture | Viruses | Biosynthesis | Hormones | Leucine | Dehydration | Homeobox | Proteins | Abscisic acid | Agriculture | Flowers & plants | Plant sciences | Abundance | Sodium chloride | Gene expression | Leucine zipper proteins | Studies | Gene silencing | Overexpression | Genetic research
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11. Full Text Class III homeodomain leucine-zipper proteins regulate xylem cell differentiation
by Ohashi-Ito, Kyoko and Kubo, Minoru and Demura, Taku and Fukuda, Hiroo
Plant and Cell Physiology, ISSN 0032-0781, 10/2005, Volume 46, Issue 10, pp. 1646 - 1656
Although it has been suggested that class III homeodomain leucine-zipper proteins (HD-Zip III) are involved in vascular development, details of the function of... 
HD-Zip III | Vascular development | Xylem | xylem | BRASSINOSTEROIDS | TRANSFORMATION | ARABIDOPSIS-THALIANA | POLARITY | HOMEOBOX GENES | PLANT SCIENCES | CELL BIOLOGY | MORPHOGENESIS | vascular development | PLANTS | TRACHEARY ELEMENT DIFFERENTIATION | EXPRESSION | MICRORNA | Asteraceae - cytology | Mutagenesis, Site-Directed | Oligonucleotide Array Sequence Analysis | Plants, Genetically Modified - genetics | Genes, Plant | Leucine Zippers | DNA Primers | Homeodomain Proteins - genetics | Base Sequence | Asteraceae - genetics | Plants, Genetically Modified - cytology | Transcription, Genetic | Cell Differentiation | Homeodomain Proteins - physiology
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12. Full Text A Novel Role for Glucocorticoid-induced Leucine Zipper Protein in Epithelial Sodium Channel-mediated Sodium Transport
by Rama Soundararajan and Ting Ting Zhang and Jian Wang and Alain Vandewalle and David Pearce
Journal of Biological Chemistry, ISSN 0021-9258, 12/2005, Volume 280, Issue 48, pp. 39970 - 39981
The steroid hormone aldosterone stimulates sodium (Na + ) transport in tight epithelia by altering the expression of target genes that regulate the activity... 
ALDOSTERONE ACTION | KINASE PATHWAY | ACTIVATION | NA+ CHANNEL | CORTICAL COLLECTING DUCT | INDUCED GENE | PHOSPHORYLATION | BIOCHEMISTRY & MOLECULAR BIOLOGY | CELL-SURFACE EXPRESSION | MOUSE KIDNEY | PRINCIPAL CELL | Xenopus | Epithelial Cells - metabolism | Immunoprecipitation | Nitriles - pharmacology | Oligonucleotide Array Sequence Analysis | Sodium - chemistry | Humans | Leucine Zippers | Electrophysiology | Extracellular Signal-Regulated MAP Kinases - metabolism | Sodium - metabolism | Epithelial Sodium Channels | Aldosterone - metabolism | Kidney - metabolism | Transfection | Biological Transport | Time Factors | Glucocorticoids - metabolism | Polymerase Chain Reaction | Sodium Channels - metabolism | Progesterone - pharmacology | Cell Line | Butadienes - pharmacology | Signal Transduction | Oocytes - metabolism | Down-Regulation | Xenopus laevis | Enzyme Inhibitors - pharmacology | Gene Expression Regulation | Aldosterone - pharmacology | Ions | Reverse Transcriptase Polymerase Chain Reaction | Blotting, Western | Animals | Mice | Enzyme Activation | DNA, Complementary - metabolism | Microscopy, Fluorescence
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13. Full Text Homeodomain leucine-zipper proteins and their role in synchronizing growth and development with the environment
by Ronny Brandt Marc Cabed Yakun Xie Stephan WenkelI
植物学报：英文版, ISSN 1672-9072, 2014, Volume 56, Issue 6, pp. 518 - 526
The Arabidopsis （Arabidopsis thaliana L.） genome encodes for four distinct classes of homeodomain leucinezipper （HD-ZIP） transcription factors （HD-ZIPI to... 
同步 | 亮氨酸拉链蛋白 | DNA结合蛋白 | 环境 | 转录因子 | 拟南芥属 | 序列特异性 | 同源 | Transcription factors | auxin | light signaling | homeodomain | leucine zipper | water stress | abscisic acid | microRNA | KANADI | REVOLUTA | leaf development | Leaf development | Auxin | MicroRNA | Light signaling | Abscisic acid | Leucine zipper | Water stress | Homeodomain | BIOCHEMISTRY & MOLECULAR BIOLOGY | FAMILY | PLANT SCIENCES | EMBRYO DEVELOPMENT | CLASS IIIHD-ZIP | SHOOT APICAL MERISTEM | SHADE AVOIDANCE | ARABIDOPSIS | CELL-DIFFERENTIATION | HOMEOBOX GENE | EXPRESSION | Environment | Light Signal Transduction | Plant Development | Homeodomain Proteins - metabolism | Leucine Zippers | Stress, Physiological | Arabidopsis thaliana | Binding proteins | Genomics | Protein binding
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14. Full Text Role of basic leucine zipper proteins in transcriptional regulation of the steroidogenic acute regulatory protein gene
by Manna, Pulak R and Dyson, Matthew T and Stocco, Douglas M
Molecular and Cellular Endocrinology, ISSN 0303-7207, 2009, Volume 302, Issue 1, pp. 1 - 11
The regulation of steroidogenic acute regulatory protein (StAR) gene transcription by cAMP-dependent mechanisms occurs in the absence of a consensus cAMP... 
C/EBPβ | Phosphorylation | cAMP signaling | StAR gene expression | CREB/CREM | Fos/Jun | CARBOXYKINASE GTP GENE | DNA-BINDING | C/EBP beta | C/EBP-BETA | ELEMENT-BINDING-PROTEIN | LIPOID ADRENAL-HYPERPLASIA | KINASE-C | LEYDIG TUMOR-CELLS | CELL BIOLOGY | CYCLIC-AMP | CBP-INDUCED STIMULATION | ENDOCRINOLOGY & METABOLISM | STAR GENE | Animals | Leucine Zippers - physiology | Signal Transduction | Models, Biological | Humans | Regulatory Elements, Transcriptional - physiology | Phosphoproteins - genetics | Genetic aspects | Leucine | DNA binding proteins | Gene expression | Blood proteins | Steroids | Protein binding | Proteins | Binding | Cellular | Control | Genes | Stars | Zippers | Jun | CREB | and StAR gene expression | CREM | Fos | phosphorylation | EBPβ
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15. Full Text Delayed flowering1 Encodes a Basic Leucine Zipper Protein That Mediates Floral Inductive Signals at the Shoot Apex in Maize
by Michael G. Muszynski and Thao Dam and Bailin Li and David M. Shirbroun and Zhenglin Hou and Edward Bruggemann and Rayeann Archibald and Evgueni V. Ananiev and Olga N. Danilevskaya
Plant Physiology, ISSN 0032-0889, 12/2006, Volume 142, Issue 4, pp. 1523 - 1536
Separation of the life cycle of flowering plants into two distinct growth phases, vegetative and reproductive, is marked by the floral transition. The initial... 
Proteins | Leaves | Phenotypes | DNA | Genes | Basic leucine zipper transcription factors | Corn | Flowering | Plants | Genetic mutation | Development and Hormone Action | ARABIDOPSIS-THALIANA | DNA-BINDING | ZINC-FINGER PROTEIN | PHOTOPERIODIC CONTROL | PLANTS | VERNALIZATION | GENE-EXPRESSION ANALYSIS | FLOWERING TIME REGULATOR | INTEGRATOR FT | RICE | PLANT SCIENCES | Plant Shoots - growth & development | Flowers - metabolism | Molecular Sequence Data | RNA, Messenger - analysis | Mutation, Missense | Phylogeny | RNA, Messenger - metabolism | Plant Proteins - chemistry | Cloning, Molecular | Gene Expression Regulation, Plant | Zea mays - metabolism | Protein Structure, Tertiary | Amino Acid Sequence | Zea mays - genetics | Signal Transduction | Plant Proteins - physiology | Models, Molecular | Basic-Leucine Zipper Transcription Factors - genetics | Flowers - growth & development | Basic-Leucine Zipper Transcription Factors - physiology | Plant Proteins - genetics | Phenotype | Sequence Alignment | Basic-Leucine Zipper Transcription Factors - chemistry | Epistasis, Genetic | Plant Shoots - metabolism | Zea mays - growth & development | Plant proteins | Physiological aspects | Research | Leucine | Growth (Plants)
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