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F1000 research, ISSN 2046-1402, 01/2019, Volume 8, p. 129
Differential gene expression (DGE) studies often suffer from poor interpretability of their primary results, i.e., thousands of differentially expressed genes.... 
Visualization | Software | Libraries | Algorithms | Gene expression | Localization
Journal Article
F1000 research, ISSN 2046-1402, 06/2016, Volume 5, p. 1384
In this article, we walk through an end–to–end Affymetrix microarray differential expression workflow using Bioconductor packages. This workflow is directly... 
Bioinformatics | Genomics | Protein Chemistry & Proteomics | Datasets | Annotations | DNA microarrays | Quality control | Metadata | Data processing | Software | Libraries | Colon | Gene expression | Experiments
Journal Article
F1000 research, ISSN 2046-1402, 10/2019, Volume 8, p. 401
is a freshwater chrysophyte alga. It thrives in cold rivers in polar and high alpine regions. It has several morphological traits reminiscent of single-celled... 
Library collections | Thalli | Polyunsaturated fatty acids | Algae | Genomes | Biology | Rivers | Phylogeny | Ribonucleic acid--RNA | Gene expression | Fatty acids | Studies | Next-generation sequencing | Evolution | Deoxyribonucleic acid--DNA
Journal Article
F1000 research, ISSN 2046-1402, 12/2018, Volume 7, pp. 1961 - 1961
The pdb-tools are a collection of Python scripts for working with molecular structure data in the Protein Data Bank (PDB) format. They allow users to edit,... 
Chemistry | Macromolecules | Bioinformatics | Protein structure | Structural biology | PDB | Python | Library collections | Proteins | Software reviews | Researchers | Data banks | Operating systems | Editing | Biology | Batch processing | Index Medicus
Journal Article
F1000 research, ISSN 2046-1402, 02/2016, Volume 5, pp. 189 - 189
Calculating solvent accessible surface areas (SASA) is a run-of-the-mill calculation in structural biology. Although there are many programs available for this... 
Bioinformatics | Quantitative Biology - Biomolecules | Molecular Surface | Structural Bioinformatics | Open Source | Solvent Accessible Surface Area
Journal Article
Journal Article