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1. Full Text Codon Usage Influences the Local Rate of Translation Elongation to Regulate Co-translational Protein Folding
by Yu, Chien-Hung and Dang, Yunkun and Zhou, Zhipeng and Wu, Cheng and Zhao, Fangzhou and Sachs, Matthew S and Liu, Yi
Molecular Cell, ISSN 1097-2765, 09/2015, Volume 59, Issue 5, pp. 744 - 754
Codon usage bias is a universal feature of eukaryotic and prokaryotic genomes and has been proposed to regulate translation efficiency, accuracy, and protein... 
FIREFLY LUCIFERASE | BIAS | BIOCHEMISTRY & MOLECULAR BIOLOGY | ESCHERICHIA-COLI | CONSERVED MECHANISM | GENE-EXPRESSION | SELECTION | EFFICIENCY | NEUROSPORA-CRASSA | IN-VITRO TRANSLATION | RIBOSOME | CELL BIOLOGY | Fungal Proteins - chemistry | Temperature | Peptide Chain Elongation, Translational | Saccharomyces cerevisiae - genetics | Ribosomes - metabolism | Neurospora crassa - metabolism | RNA, Messenger - metabolism | Saccharomyces cerevisiae - metabolism | Genes, Fungal | RNA, Fungal - genetics | Codon - genetics | Luciferases, Firefly - metabolism | Recombinant Proteins - metabolism | RNA, Messenger - genetics | Models, Molecular | Recombinant Proteins - chemistry | Recombinant Proteins - genetics | Fungal Proteins - genetics | Luciferases, Firefly - chemistry | Protein Folding | RNA, Fungal - metabolism | Animals | Neurospora crassa - genetics | Luciferases, Firefly - genetics | Fungal Proteins - metabolism | Usage | Codon | Protein folding | Genetic translation | Genomics | Codon usage bias | protein folding | Neurospora | translation elongation
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2. Full Text Firefly luciferase mutants as sensors of proteome stress
by Gupta, Rajat and Kasturi, Prasad and Bracher, Andreas and Loew, Christian and Zheng, Min and Villella, Adriana and Garza, Dan and Hartl, F Ulrich and Raychaudhuri, Swasti
Nature Methods, ISSN 1548-7091, 10/2011, Volume 8, Issue 10, pp. 879 - 884
Maintenance of cellular protein homeostasis (proteostasis) depends on a complex network of molecular chaperones, proteases and other regulatory factors.... 
HSP90 | CAPACITY | HOMEOSTASIS | DISEASES | MOLECULAR CHAPERONES | ELEGANS | BIOCHEMICAL RESEARCH METHODS | RETICULOCYTE LYSATE | NEURODEGENERATION | PROTEINS | PROTEOSTASIS | Green Fluorescent Proteins - metabolism | Humans | Luminescence | Mutant Proteins - genetics | Solubility | Homeostasis | Models, Molecular | Mutant Proteins - metabolism | Green Fluorescent Proteins - genetics | Luciferases, Firefly - chemistry | Proteins - metabolism | Mutant Proteins - chemistry | Luciferases, Firefly - genetics | HeLa Cells | Green Fluorescent Proteins - chemistry | Proteome - metabolism | Luciferases, Firefly - metabolism | Enzymes | Biomedical research | Mutation | Insects | Biosensors | Proteomics
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3. Full Text Visualizing Fewer than 10 Mouse T Cells with an Enhanced Firefly Luciferase in Immunocompetent Mouse Models of Cancer
by Brian A. Rabinovich and Yang Ye and Tamara Etto and Jie Qing Chen and Hyam I. Levitsky and Willem W. Overwijk and Laurence J. N. Cooper and Juri Gelovani and Patrick Hwu
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 9/2008, Volume 105, Issue 38, pp. 14342 - 14346
Antigen specific T cell migration to sites of infection or cancer is critical for an effective immune response. In mouse models of cancer, the number of... 
T lymphocytes | Albinism | Lymphocytes | Imaging | Vaccination | Photons | Mice | Adoptive transfer | Tumors | Cancer | Molecular biology | Bioluminescence | Immunology | molecular biology | INTERLEUKIN-2 | MULTIDISCIPLINARY SCIENCES | TRAFFICKING | RECEPTOR | VERSUS-HOST-DISEASE | TUMOR-INFILTRATING LYMPHOCYTES | METASTATIC MELANOMA | bioluminescence | IN-VIVO | PERIPHERAL-BLOOD LYMPHOCYTES | immunology | ADOPTIVE IMMUNOTHERAPY | INTRAVITAL MICROSCOPY | Transduction, Genetic | Ovalbumin - immunology | Dendritic Cells - immunology | Mice, Inbred C57BL | Cells, Cultured | Luminescent Measurements | Genetic Vectors - genetics | Gene Expression Regulation, Enzymologic | Animals | Retroviridae - genetics | T-Lymphocytes - cytology | T-Lymphocytes - metabolism | Neoplasms - immunology | Protein Engineering | Cell Line, Tumor | Luciferases, Firefly - genetics | T-Lymphocytes - immunology | Immunocompetence | Cell Movement | Disease Models, Animal | Luciferases, Firefly - metabolism | Evaluation | Molecular genetics | Luciferase | Research | Properties | T cells | Tissue | Rodents | T cell receptors | Gene expression | Cell adhesion & migration | Biological Sciences
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4. Full Text RNA-directed packaging of enzymes within virus-like particles
by Fiedler, Jason D and Brown, Steven D and Lau, Jolene L and Finn, M.G
Angewandte Chemie - International Edition, ISSN 1433-7851, 12/2010, Volume 49, Issue 50, pp. 9648 - 9651
Packaged molecular machines are available in large amounts using dual expression vectors that guide the preparation of Qβ virus-like particles encapsulating... 
encapsulation | virus-like particles | enzymes | RNA-protein interactions | Qβ bacteriophage | FIREFLY LUCIFERASE | VAULT NANOCAPSULES | BACTERIOPHAGE-Q-BETA | CARRIER PROTEIN DOMAIN | CHEMISTRY, MULTIDISCIPLINARY | IMMOBILIZATION | ENCAPSIDATION | DISPLAY | COAT PROTEIN | DIFFUSION CONSTANT | BINDING | Q beta bacteriophage | Enzymes, Immobilized - metabolism | Aminopeptidases - genetics | Gene Expression | RNA | Capsid Proteins - metabolism | Aminopeptidases - administration & dosage | RNA, Messenger - genetics | Virion - genetics | Fireflies - genetics | RNA, Messenger - metabolism | Virion - metabolism | Fireflies - metabolism | Luciferases, Firefly - administration & dosage | Animals | Enzymes, Immobilized - genetics | Escherichia coli - genetics | Allolevivirus - genetics | Enzymes, Immobilized - administration & dosage | Luciferases, Firefly - genetics | Allolevivirus - metabolism | Aminopeptidases - metabolism | Capsid Proteins - genetics | Luciferases, Firefly - metabolism | enzyme catalysis | enzyme protection
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5. Full Text High-throughput firefly luciferase reporter assays
by Siebring-van Olst, Ellen and van Beusechem, Victor W
Methods in Molecular Biology, ISSN 1064-3745, 2018, Volume 1755, pp. 19 - 29
Firefly luciferase reporter gene assays find wide application in high-throughput screens to identify molecular components of biological networks or to identify... 
High-throughput screening | Reporter gene assay | Firefly luciferase | Assay reagent | Stable luminescence | Biological Assay - instrumentation | Cell Line | RNA, Small Interfering - genetics | Luminescent Agents - chemistry | Luciferases, Renilla - genetics | Cell Culture Techniques - instrumentation | High-Throughput Screening Assays - instrumentation | Humans | Luciferases, Renilla - chemistry | Genes, Reporter - genetics | Biological Assay - methods | Luciferases, Firefly - chemistry | Cell Culture Techniques - methods | Luminescent Measurements - methods | Animals | Firefly Luciferin - chemistry | Luciferases, Firefly - genetics | High-Throughput Screening Assays - methods | Luminescent Measurements - instrumentation | RNA, Small Interfering - metabolism
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6. Full Text Structural basis for the spectral difference in luciferase bioluminescence
by Nakatsu, Toru and Ichiyama, Susumu and Hiratake, Jun and Saldanha, Adrian and Kobashi, Nobuyuki and Sakata, Kanzo and Kato, Hiroaki
Nature, ISSN 0028-0836, 03/2006, Volume 440, Issue 7082, pp. 372 - 376
Fireflies communicate with each other by emitting yellow- green to yellow- orange brilliant light. The bioluminescence reaction, which uses luciferin, Mg- ATP... 
REFINEMENT | SYNTHETASES | FIREFLY LUCIFERASE | ACTIVE-SITE | CRYSTAL-STRUCTURE | COLOR | BIOSYNTHESIS | MULTIDISCIPLINARY SCIENCES | LIGHT | SUPERFAMILY | SITE-DIRECTED MUTAGENESIS | Lysergic Acid - chemistry | Luminescence | Crystallography, X-Ray | Pyrazines - metabolism | Structure-Activity Relationship | Luminescent Measurements | Indoles - metabolism | Catalysis | Binding Sites | Luciferases, Firefly - metabolism | Color | Models, Molecular | Fireflies - genetics | Lysergic Acid - metabolism | Luciferases, Firefly - chemistry | Mutation - genetics | Fireflies - metabolism | Pyrazines - chemistry | Animals | Lysergic Acid - analogs & derivatives | Hydrophobic and Hydrophilic Interactions | Luciferases, Firefly - genetics | Protein Conformation | Fireflies - enzymology | Indoles - chemistry | Enzymes | Amino acids | Bioluminescence | Oxygen | Insects
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7. Full Text Aminoluciferins extend firefly luciferase bioluminescence into the near-infrared and can be preferred substrates over d-luciferin
by Mofford, David M and Reddy, Gadarla Randheer and Miller, Stephen C
Journal of the American Chemical Society, ISSN 0002-7863, 09/2014, Volume 136, Issue 38, pp. 13277 - 13282
Firefly luciferase adenylates and oxidizes D-luciferin to chemically generate visible light and is widely used for biological assays and imaging. Here we show... 
RED | DYES | IN-VIVO | LIGHT | ASSAYS | EMISSION | SYNTHETIC LUCIFERIN | GREEN | CHEMISTRY, MULTIDISCIPLINARY | Luminescent Agents - chemical synthesis | Cricetulus | Substrate Specificity | Luminescent Measurements | Luminescent Agents - analysis | Luciferases, Firefly - analysis | Animals | Benzothiazoles - chemical synthesis | Amination | Benzothiazoles - analysis | Luciferases, Firefly - genetics | Kinetics | Mutation | Fireflies - enzymology | Benzothiazoles - metabolism | Luminescent Agents - metabolism | CHO Cells | Luciferases, Firefly - metabolism | Luciferase | Analysis | Physiological aspects | Amino acids | Chemical properties | Chemical synthesis | Gene expression | Bioluminescence | Imaging | Reengineering | Flux | Photons | Fireflies | Selectivity | Biological
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8. Full Text Developing mammalian cellular clock models using firefly luciferase reporter
by Ramanathan, Chidambaram and Liu, Andrew C
Methods in Molecular Biology, ISSN 1064-3745, 2018, Volume 1755, pp. 49 - 64
In mammals, many aspects of metabolic, physiological, and behavioral processes are regulated by endogenous circadian clocks. Oscillators of different tissue... 
Circadian clock | Per2 | Bioluminescence | Firefly luciferase | Hepatocytes | Mammalian | Cell Line | Genes, Reporter - genetics | Luciferases, Firefly - chemistry | Luminescent Measurements - methods | Genetic Vectors - genetics | Animals | Transfection - methods | Lentivirus - genetics | Luciferases, Firefly - genetics | Mice | Transfection - instrumentation | Circadian Clocks - physiology | Luminescent Measurements - instrumentation
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9. Full Text Combinatorial library screening for developing an improved split-firefly luciferase fragment-assisted complementation system for studying protein-protein interactions
by Paulmurugan, Ramasamy and Gambhir, Sanjiv S
Analytical Chemistry, ISSN 0003-2700, 03/2007, Volume 79, Issue 6, pp. 2346 - 2353
Split reporter-based bioluminescence imaging is a useful strategy for studying protein-protein as well as other intracellular interactions. We have used a... 
ANIMALS | REPORTER GENE-EXPRESSION | LIVING SUBJECTS | CHEMISTRY, ANALYTICAL | MAMMALIAN-CELLS | Cell Line | Peptide Fragments - metabolism | Luciferases, Renilla - genetics | Humans | Endoplasmic Reticulum - metabolism | Peptide Library | Luciferases, Renilla - analysis | Protein Folding | Peptide Fragments - analysis | Luciferases, Firefly - analysis | Animals | Luciferases, Renilla - metabolism | Hypoxia-Inducible Factor 1, alpha Subunit - metabolism | Protein Binding | Ligands | Luciferases, Firefly - genetics | Mice | Peptide Fragments - genetics | Luciferases, Firefly - metabolism | Cell culture | Bioluminescence | Usage | Research | Protein-protein interactions | Proteins | Analytical chemistry | Biochemistry | Cellular biology | Molecular Imaging | Rapamycin | Bioluminescence Imaging | Enhanced Green Fluorescent Protein | Protein-Protein Interactions | Synthetic Renilla Luciferase
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10. Full Text Codon-Optimized Gaussia Luciferase cDNA for Mammalian Gene Expression in Culture and in Vivo
by Tannous, Bakhos A and Kim, Dong-Eog and Fernandez, Juliet L and Weissleder, Ralph and Breakefield, Xandra O
Molecular Therapy, ISSN 1525-0016, 03/2005, Volume 11, Issue 3, pp. 435 - 443
Photoproteins have played a major role in advancing our understanding of biological processes. A broader array of biocompatible, nontoxic, and novel reporters... 
MEDICINE, RESEARCH & EXPERIMENTAL | FIREFLY LUCIFERASE | ANALOGS | BIOLUMINESCENT REPORTER | HYBRIDIZATION | TUMORS | INDICATORS | CLONING | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | PURIFICATION | GENETICS & HEREDITY | LABEL | RENILLA-RENIFORMIS LUCIFERASE | Gene Transfer Techniques | Copepoda - genetics | Luciferases - metabolism | Luciferases, Renilla - genetics | Humans | Copepoda - enzymology | Renilla - enzymology | Luciferases - genetics | Renilla - genetics | Animals | Luciferases, Renilla - metabolism | Mice, Nude | Luciferases, Firefly - genetics | Mice | Kinetics | Genes, Reporter | DNA, Complementary | Luciferases, Firefly - metabolism
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11. Full Text The frequency of translational misreading errors in E. coli is largely determined by tRNA competition
by Kramer, Emily B and Farabaugh, Philip J
RNA, ISSN 1355-8382, 2007, Volume 13, Issue 1, pp. 87 - 96
Estimates of missense error rates (misreading) during protein synthesis vary from 10(-3) to 10(-4) per codon. The experiments reporting these rates have... 
Accuracy | Misreading errors | Streptomycin | Protein synthesis | Paromomycin | AMINOACYL-TRANSFER-RNA | FIREFLY LUCIFERASE | misreading errors | BIOCHEMISTRY & MOLECULAR BIOLOGY | ESCHERICHIA-COLI | protein synthesis | accuracy | 30S RIBOSOMAL-SUBUNIT | paromomycin | INDUCED FIT | GENETIC-CODE | MISTRANSLATION | FIDELITY | DISCRIMINATION | streptomycin | Streptomycin - pharmacology | RNA Editing - genetics | RNA, Transfer - metabolism | Binding Sites - genetics | Mutation, Missense | Paromomycin - pharmacology | Luciferases, Firefly - analysis | Lysine - genetics | Escherichia coli - genetics | Luciferases, Firefly - genetics | Protein Biosynthesis - genetics | Codon - genetics | Mutation | Lysine - chemistry | RNA Editing - drug effects
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12. Full Text ΔFlucs: Brighter Photinus pyralis firefly luciferases identified by surveying consecutive single amino acid deletion mutations in a thermostable variant
by Halliwell, Lisa M and Jathoul, Amit P and Bate, Jack P and Worthy, Harley L and Anderson, James C and Jones, D. Dafydd and Murray, James A.H
Biotechnology and Bioengineering, ISSN 0006-3592, 01/2018, Volume 115, Issue 1, pp. 50 - 59
Halliwell et al identify brighter firefly luciferase mutants in a thermostable Photinus pyralis background (×11 Fluc) by surveying single amino acid deletion... 
deletion mutagenesis | bioreporter | firefly luci ferase | bioluminescence | infraluciferi | bioimaging | MUTAGENESIS | OMEGA-LOOP | PROTEIN-STRUCTURE | STABILITY | RED | REPORTER | LUMINESCENCE | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | KINETICS | BIOLUMINESCENCE COLOR | SATURATION | Sequence Deletion | Gene Library | Luminescence | Mutant Proteins - genetics | Models, Molecular | Substrate Specificity | Mutant Proteins - metabolism | Amino Acids - genetics | Luciferases, Firefly - chemistry | Animals | Mutant Proteins - chemistry | Luciferases, Firefly - genetics | Protein Conformation | Kinetics | Fireflies - enzymology | Luciferases, Firefly - metabolism | Enzymes | Bioluminescence | Amino acids | Hydrophobicity | Surveying | Mutants | Clonal deletion | Acids | Luciferin | Substrate specificity | Reaction kinetics | Deletion | Emissions control | Mutation | Index Medicus
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13. Full Text Cellular Immune Response Against Firefly Luciferase After Sleeping Beauty–Mediated Gene Transfer In Vivo
by Podetz-Pedersen, Kelly M and Vezys, Vaiva and Somia, Nikunj V and Russell, Stephen J and McIvor, R. Scott
Human Gene Therapy, ISSN 1043-0342, 11/2014, Volume 25, Issue 11, pp. 955 - 965
The Sleeping Beauty (SB) transposon system has been shown to mediate new gene sequence integration resulting in long-term expression. Here the effectiveness of... 
Research Articles | MEDICINE, RESEARCH & EXPERIMENTAL | HUMAN-CELLS | LONG-TERM EXPRESSION | PHENOTYPIC CORRECTION | MUTATIONAL ANALYSIS | DELIVERY | TRANSPOSON SYSTEM | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | TYROSINEMIA TYPE-I | PLASMID DNA | LIVER | GENETICS & HEREDITY | HEMOPHILIC MICE | Transformation, Genetic | Luciferases, Firefly - biosynthesis | Animals | Luciferases, Firefly - immunology | Humans | Mice, Inbred C57BL | Transposases - genetics | Luciferases, Firefly - genetics | Mice, Inbred NOD | Adoptive Transfer | Mice, SCID | Immunity, Cellular
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14. Full Text Firefly genomes illuminate parallel origins of bioluminescence in beetles
by Fallon, Timothy R and Lower, Sarah E and Lower, Sarah E and Chang, Ching-Ho and Chang, Ching-Ho and Bessho-Uehara, Manabu and Bessho-Uehara, Manabu and Martin, Gavin J and Bewick, Adam J and Behringer, Megan and Debat, Humberto J and Debat, Humberto J and Wong, Isaac and Wong, Isaac and Day, John C and Suvorov, Anton and Silva, Christian J and Silva, Christian J and Stanger-Hall, Kathrin F and Hall, David W and Hall, David W and Schmitz, Robert J and Nelson, David R and Nelson, David R and Lewis, Sara M and Shigenobu, Shuji and Shigenobu, Shuji and Bybee, Seth M and Larracuente, Amanda M and Larracuente, Amanda M and Oba, Yuichi and Weng, Jing-Ke and Weng, Jing-Ke
eLife, ISSN 2050-084X, 10/2018, Volume 7
Fireflies and their luminous courtships have inspired centuries of scientific study. Today firefly luciferase is widely used in biotechnology, but the... 
firefly | genetics | bioluminescence | Ignelater luminosus | luciferase | genomics | Aquatica lateralis | Photinus pyralis | INFECTIOUS-SALMON-ANEMIA | OPSIN GENES | MITOCHONDRIAL GENOME | FLASH SIGNAL EVOLUTION | BIOLOGY | INFLUENZA-VIRUS | CLICK-BEETLE | DE-NOVO IDENTIFICATION | MULTIPLE SEQUENCE ALIGNMENT | PHOTINUS-PYRALIS COLEOPTERA | VIRUS RNA-POLYMERASE | Coleoptera - genetics | Animals | Molecular Sequence Annotation | Genome, Insect - genetics | Luciferases, Firefly - genetics | Luminescent Proteins - genetics | Fireflies - genetics | Fireflies - enzymology | Coleoptera - enzymology | Evolution, Molecular | Beetles | Analysis | Genomics | Luciferase | Genetic research | Evolution | Genomes | Nucleotide sequencing | DNA sequencing | Biotechnology | Bioluminescence | Biomedical research | Laboratories | Cloning | Biochemistry | Biology | Gene expression | Males | Abdomen | Symbionts | Phylogenetics | Females
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