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by Hoadley, Katherine A and Yau, Christina and Hinoue, Toshinori and Lazar, Alexander J and Drill, Esther and Shen, Ronglai and Taylor, Alison M and Sanchez-Vega, Francisco and Schneider, Barbara G and Lawrence, Michael S and Malta, Tathiane M and Stuart, Joshua M and Laird, Peter W and Demchok, John A and Kasapi, Melpomeni and Hutter, Carolyn M and Sofia, Heidi J and Tarnuzzer, Roy and Wang, Zhining and Yang, Liming and Zenklusen, Jean C and Zhang, Jiashan (Julia) and Chudamani, Sudha and Liu, Jia and Naresh, Rashi and Pihl, Todd and Sun, Qiang and Wan, Yunhu and Wu, Ye and Cho, Juok and DeFreitas, Timothy and Frazer, Scott and Getz, Gad and Heiman, David I and Lin, Pei and Noble, Michael S and Saksena, Gordon and Voet, Doug and Zhang, Hailei and Bernard, Brady and Dhankani, Varsha and Knijnenburg, Theo and Kramer, Roger and Leinonen, Kalle and Miller, Michael and Shmulevich, Ilya and Thorsson, Vesteinn and Zhang, Wei and Hegde, Apurva M and Ju, Zhenlin and Li, Jun and Liang, Han and Ling, Shiyun and Liu, Wenbin and Mills, Gordon B and Ng, Kwok-Shing and Rao, Arvind and Ryan, Michael and Zhang, Jiexin and Chakravarty, Debyani and Chatila, Walid K and de Bruijn, Ino and Gao, Jianjiong and Gross, Benjamin E and Heins, Zachary J and Kundra, Ritika and La, Konnor and Luna, Augustin and Nissan, Moriah G and Reznik, Ed and Sander, Chris and Sheridan, Robert and Sumer, S. Onur and Sun, Yichao and Wang, Jioajiao and Zhang, Hongxin and Anur, Pavana and Peto, Myron and Spellman, Paul and Benz, Christopher and Hayes, D. Neil and Parker, Joel S and Ally, Adrian and Balasundaram, Miruna and Chuah, Eric and Dhalla, Noreen and Lee, Darlene and Marra, Marco A and Mayo, Michael and Moore, Richard A and Mungall, Karen and Schein, Jacqueline E and Tam, Angela and Thiessen, Nina and Tse, Kane and Wong, Tina and Beroukhim, Rameen and Gao, Galen F and Ha, Gavin and Meyerson, Matthew and ... and The Cancer Genome Atlas Network and Cancer Genome Atlas Network
Cell (Cambridge), ISSN 0092-8674, 04/2018, Volume 173, Issue 2, pp. 291 - 304.e6
Journal Article
Proceedings of the National Academy of Sciences - PNAS, ISSN 1091-6490, 11/2016, Volume 113, Issue 44, pp. 12580 - 12585
Commercial tomatoes are widely perceived by consumers as lacking flavor. A major part of that problem is a postharvest handling system that chills fruit.... 
Methylome | Fruit quality | Transcriptome | Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Volatile organic compounds | Genetic aspects | Tomatoes | Nucleotide sequencing | Methylation | Observations | Health aspects | Methods | DNA sequencing | Index Medicus | methylome | Biological Sciences | transcriptome | fruit quality
Journal Article
Trends in microbiology (Regular ed.), ISSN 0966-842X, 08/2018, Volume 26, Issue 8, pp. 715 - 726
A wide variety of bacterial pathogens express phase-variable DNA methyltransferases that control expression of multiple genes via epigenetic mechanisms. These... 
SMRT sequencing | DNA methyltransferase | phasevarion | methylome analysis | phase variation | Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Microbiology | Science & Technology | Index Medicus | phase-variation
Journal Article
Epigenetics, ISSN 1559-2308, 11/2017, Volume 12, Issue 9, pp. 743 - 750
We recently showed that, after optimization, our methyl-CpG binding domain sequencing (MBD-seq) application approximates the methylome-wide coverage obtained... 
low-input DNA | methyl-CpG binding domain sequencing | methylome-wide association study | Blood spots | whole-genome bisulfite sequencing | lab-technical optimization | methylome-wide coverage | Biochemistry & Molecular Biology | Genetics & Heredity | Life Sciences & Biomedicine | Science & Technology | Index Medicus
Journal Article
Oncotarget, ISSN 1949-2553, 2018, Volume 9, Issue 17, pp. 13807 - 13821
Pilocytic astrocytoma (PA) is the most common glioma in pediatric patients and occurs in different locations. Chromosomal alterations are mostly located at... 
Gene expression alteration | Human methylation beadchips | Methylome alteration | Pilocytic astrocytomas | Topographic and tumor biomarkers
Journal Article