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1. Environmental DNA
: for biodiversity research and monitoring
by Taberlet, Pierre and Bonin, Aurélie and Zinger, Lucie and Coissac, Eric
2018, First edition., ISBN 0198767226, xii, 253 pages
Analyse | Microbiologie moléculaire | aquatic environment | ADN fossile | Microbial ecology | Research | Biodiversity | environmental protection | Écologie microbienne | environmental assessment | Molecular microbiology | ecosystem management | Surveillance | Analysis | DNA, Fossil | Environnement | Environmental monitoring | Biodiversité | Recherche | Genetics and Genomics | Evolutionary Biology | Biodiversity and Conservation Biology | Environmental DNA | Metagenomics | Species detection | Biomonitoring | Diet analysis | DNA metabarcoding | Metabarcode design | Sampling design | Sequencing | PCR | Environmental sciences
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2. Full Text Intestinal microbial diversity is higher in Pacific abalone (Haliotis discus hannai) with slower growth rates
by Choi, Mi-Jin and Oh, Young Dae and Kim, Yeo Reum and Lim, Han Kyu and Kim, Jong-Myoung
Aquaculture, ISSN 0044-8486, 05/2021, Volume 537, p. 736500
Microbial diversity | Metabarcoding | Pacific abalone | Microbiome
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3. Full Text A pilot experiment to assess the efficiency of pharmaceutical plant wastewater treatment and the decreasing effluent toxicity to periphytic biofilms
by Tardy, Vincent and Bonnineau, Chloé and Bouchez, Agnès and Miège, Cécile and Masson, Matthieu and Jeannin, Pierric and Pesce, Stéphane
Journal of hazardous materials, ISSN 0304-3894, 06/2021, Volume 411
Metabarcoding | Continuous monitoring | Microbial ecotoxicology | Microbial diversity | Microbial functions
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4. Full Text Corrigendum: Assessing the Diversity and Distribution of Apicomplexans in Host and Free-Living Environments Using High-Throughput Amplicon Data and a Phylogenetically Informed Reference Framework
by Javier del Campo and Javier del Campo and Thierry J. Heger and Thierry J. Heger and Raquel Rodríguez-Martínez and Alexandra Z. Worden and Thomas A. Richards and Ramon Massana and Patrick J. Keeling
Frontiers in microbiology, ISSN 1664-302X, 01/2020, Volume 11, pp. 576322 - 576322
phylogeny | diversity | metabarcoding | apicomplexans | distribution | classification
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5. Full Text Quantitative and qualitative assessment of pollen DNA metabarcoding using constructed species mixtures
by Bell, Karen L and Burgess, Kevin S and Botsch, Jamieson C and Dobbs, Emily K and Read, Timothy D and Brosi, Berry J
Molecular ecology, ISSN 0962-1083, 01/2019, Volume 28, Issue 2, pp. 431 - 455
pollen DNA barcoding | amplification bias | DNA extraction bias | copy number bias | quantitative DNA metabarcoding | DNA metabarcoding | Biochemistry & Molecular Biology | Environmental Sciences & Ecology | Ecology | Life Sciences & Biomedicine | Evolutionary Biology | Science & Technology | DNA | Analysis | Grains | Taxonomy | Markers | Abundance | Species composition | Contamination | Genera | Gene sequencing | Matching | Relative abundance | Scaling | Pollen | Bioinformatics | Deoxyribonucleic acid--DNA | Scaling factors | Species richness | Index Medicus
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6. Full Text qPCR-based assessment of microfaunal indicators of oil for monitoring benthos around oil and gas platforms
by Krolicka, Adriana and Gomiero, Alessio and Baussant, Thierry
The Science of the total environment, ISSN 0048-9697, 09/2020, Volume 736, pp. 139527 - 139527
Metabarcoding | qPCR | Sediments | Oil pollution | Biological indicators | Index Medicus
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7. Full Text Ciliates (Alveolata, Ciliophora) as bioindicators of environmental pressure: A karstic river case
by Kulaš, Antonija and Gulin, Vesna and Matoničkin Kepčija, Renata and Žutinić, Petar and Sertić Perić, Mirela and Orlić, Sandi and Kajan, Katarina and Stoeck, Thorsten and Lentendu, Guillaume and Čanjevac, Ivan and Martinić, Ivan and Gligora Udovič, Marija
Ecological indicators, ISSN 1470-160X, 05/2021, Volume 124, p. 107430
Molecular OTUs | Ciliates | eDNA metabarcoding | Bioindicators | Biofilms | Morphology
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8. Full Text Diversity of Phytophthora Species Detected in Disturbed and Undisturbed British Soils Using High-Throughput Sequencing Targeting ITS rRNA and COI mtDNA Regions
by Landa, Blanca B and Arias-Giraldo, Luis F and Henricot, Béatrice and Montes-Borrego, Miguel and Shuttleworth, Lucas A and Pérez-Sierra, Ana
Forests, ISSN 1999-4907, 02/2021, Volume 12, Issue 2, p. 229
soilborne pathogens | metabarcoding | oomycetes | forest diseases
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9. Full Text MACSE v2: Toolkit for the Alignment of Coding Sequences Accounting for Frameshifts and Stop Codons
by Ranwez, Vincent and Ranwez, Vincent and Douzery, Emmanuel J P and Douzery, Emmanuel J.P and Cambon, Cedric and Cambon, Cédric and Chantret, Nathalie and Chantret, Nathalie and Delsuc, Frédéric and Delsuc, Frederic
Molecular biology and evolution, ISSN 0737-4038, 10/2018, Volume 35, Issue 10, pp. 2582 - 2584
Metabarcoding | Molecular evolution | Pseudogenes | Multiple sequence alignment | Phylogenomics | Biochemistry & Molecular Biology | Genetics & Heredity | Life Sciences & Biomedicine | Evolutionary Biology | Science & Technology | Sequence Alignment | Software | Frameshift Mutation | Codon, Terminator | Index Medicus | Life Sciences | Populations and Evolution | Biodiversity | Systematics, Phylogenetics and taxonomy | Quantitative Methods | pseudogenes | metabarcoding | Resources | molecular evolution | phylogenomics | multiple sequence alignment
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10. Full Text Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity
by Thomsen, Philip Francis and Willerslev, Eske
Biological conservation, ISSN 0006-3207, 03/2015, Volume 183, pp. 4 - 18
Environmental DNA | DNA metabarcoding | Extinction | Conservation | eDNA | Biodiversity | Monitoring | EDNA | Life Sciences & Biomedicine | Biodiversity Conservation | Environmental Sciences & Ecology | Ecology | Biodiversity & Conservation | Science & Technology | Environmental Sciences | Biological diversity conservation | DNA | Surveys | Wildlife conservation | Populations | Ecosystems | Deoxyribonucleic acid | Biological | Environmental monitoring | Sampling
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