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1. Full Text Dynamic metabolic flux analysis — tools for probing transient states of metabolic networks
by Antoniewicz, Maciek R
Current opinion in biotechnology, ISSN 0958-1669, 2013, Volume 24, Issue 6, pp. 973 - 978
Internal Medicine | Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Biochemical Research Methods | Science & Technology | Biotechnology - methods | Metabolic Flux Analysis - methods | Metabolic Networks and Pathways | Time Factors | Biotechnology - standards | Models, Biological | Kinetics | Index Medicus
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2. Full Text What is flux balance analysis?
by Palsson, Bernhard Ø and Orth, Jeffrey D and Thiele, Ines
Nature biotechnology, ISSN 1087-0156, 03/2010, Volume 28, Issue 3, pp. 245 - 248
Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Fundamental and applied biological sciences. Psychology | Biotechnology | Biological and medical sciences | General aspects | Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects) | Systems Biology - methods | Phenotype | Metabolic Networks and Pathways | Models, Biological | Escherichia coli - metabolism | Biomass | Oxygen - metabolism | Mathematical analysis | Index Medicus
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3. Full Text Comparative metabolic flux profiling of melanoma cell lines: Beyond the Warburg effect
by Scott, David A and Richardson, Adam D and Filipp, Fabian V and Knutzen, Christine A and Chiang, Gary G and Ronai, Ze'ev A and Osterman, Andrei L and Smith, Jeffrey W
The Journal of biological chemistry, ISSN 0021-9258, 12/2011, Volume 286, Issue 49, pp. 42626 - 42634
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Melanoma - metabolism | Gas Chromatography-Mass Spectrometry - methods | Humans | Lactic Acid - metabolism | Glutamine - metabolism | Fermentation | Ketoglutaric Acids - chemistry | Citric Acid Cycle | Skin Neoplasms - metabolism | Melanocytes - cytology | Models, Biological | Glucose - chemistry | Cell Line, Tumor | Glucose - metabolism | Glycolysis | Hypoxia | Index Medicus | Metabolic Tracers | Glucose Metabolism | Melanoma | Fatty Acid Metabolism | Glutamine Metabolism | Metabolism
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4. Full Text Transcriptional regulation is insufficient to explain substrate‐induced flux changes in Bacillus subtilis
by Chubukov, Victor and Uhr, Markus and Le Chat, Ludovic and Kleijn, Roelco J and Jules, Matthieu and Link, Hannes and Aymerich, Stephane and Stelling, Jörg and Sauer, Uwe
Molecular systems biology, ISSN 1744-4292, 2013, Volume 9, Issue 1, pp. 709 - n/a
central carbon metabolism | metabolic flux | transcriptional regulation | Central carbon metabolism | Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Metabolic Networks and Pathways | RNA, Messenger - genetics | Carbon Isotopes | Transcription, Genetic | Bacillus subtilis - enzymology | Kinetics | Gene Expression Regulation, Bacterial | RNA, Messenger - metabolism | Bacillus subtilis - genetics | Tricarboxylic acid cycle | Enzymes | Metabolomics | Fluctuations | Transcription | Gene regulation | Switches | Biosynthesis | Fluxes | Metabolism | Gene expression | Experiments | Carbon | Substrates | Environmental conditions | Confidence intervals | Metabolic flux | Control | Allosteric properties | Metabolites | Rewiring | Labeling | Index Medicus | Life Sciences
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5. Full Text Autophagic flux control in neurodegeneration: Progress and precision targeting—Where do we stand?
by Lumkwana, Dumisile and du Toit, Andre and Kinnear, Craig and Loos, Ben
Progress in neurobiology, ISSN 0301-0082, 06/2017, Volume 153, pp. 64 - 85
Autophagosomes | Neurodegeneration | Autophagy defects | Autophagic flux | Autophagolysosomes | Autophagic flux modulation | Lysosomes | Parkison's disease | Huntington's disease | Alzheimer's disease | Autophagic flux assessment | Autophagy | Neurosciences | Neurosciences & Neurology | Life Sciences & Biomedicine | Science & Technology | Neurons - pathology | Metabolic Flux Analysis - methods | Neurodegenerative Diseases - pathology | Humans | Treatment Outcome | Evidence-Based Medicine | Neurodegenerative Diseases - drug therapy | Autophagy - drug effects | Apoptosis Regulatory Proteins - metabolism | Animals | Neurodegenerative Diseases - physiopathology | Apoptosis Regulatory Proteins - antagonists & inhibitors | Neurons - metabolism | Models, Neurological | Neurons - drug effects | Neuroprotective Agents - administration & dosage | Molecular Targeted Therapy - methods | Antitubercular agents | Proteins | Nervous system diseases | Magneto-electric machines | Neurons | Cell death | Physiological aspects | Development and progression | Machinery | Index Medicus
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6. Full Text Computationally efficient flux variability analysis
by Gudmundsson, Steinn and Thiele, Ines
BMC bioinformatics, ISSN 1471-2105, 09/2010, Volume 11, Issue 1, pp. 489 - 489
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Biochemical Research Methods | Science & Technology | Mathematical & Computational Biology | Metabolic Networks and Pathways | Systems Biology - methods | Computer Simulation | Metabolic regulation | Models | Research | Computational biology | Studies | Computer science | Problems | Metabolites | C plus plus | Biology | Experiments | Index Medicus
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7. Full Text Quantitative flux coupling analysis
by Tefagh, Mojtaba and Tefagh, Mojtaba and Boyd, Stephen P and Boyd, Stephen P
Journal of mathematical biology, ISSN 0303-6812, 4/2019, Volume 78, Issue 5, pp. 1459 - 1484
92C42 | Flux coupling analysis | Mathematical and Computational Biology | Systems biology | FCA | QFCA | Metabolic network analysis | Mathematics | 49N15 | Applications of Mathematics | 90C05 | Flux coupling equation | Biology | Life Sciences & Biomedicine - Other Topics | Life Sciences & Biomedicine | Science & Technology | Mathematical & Computational Biology | Usage | Models | Mathematical models | Algorithms | Metabolism | Fluctuations | Metabolites | Mathematical analysis | Metabolic networks | Dependence | Flux | Genomes | Coupling | Index Medicus
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8. Full Text Exo-MFA – A 13C metabolic flux analysis framework to dissect tumor microenvironment-secreted exosome contributions towards cancer cell metabolism
by Achreja, Abhinav and Zhao, Hongyun and Yang, Lifeng and Yun, Tae Hyun and Marini, Juan and Nagrath, Deepak
Metabolic engineering, ISSN 1096-7176, 09/2017, Volume 43, Issue Pt B, pp. 156 - 172
Exo-MFA | Tumor microenvironment | Cancer metabolism | Exosomes | 13C-metabolic flux analysis | Intercellular metabolic flux analysis | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Exosomes - metabolism | Neoplasms - metabolism | Humans | Cell Communication | Cell Line, Tumor | Glycolysis | Isotope Labeling | Tumor Microenvironment | Neoplasms - pathology | Carbon Isotopes - chemistry | Citric Acid Cycle | Medical colleges | Medical research | Development and progression | Lipids | Nucleic acids | Lactates | Glucose metabolism | Algorithms | Metabolites | Carrier proteins | Analysis | Physiological aspects | Medicine, Experimental | Cancer | Biomedical engineering | Glutamine | Index Medicus
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9. Full Text Metabolic networks in motion: 13C‐based flux analysis
by Sauer, Uwe
Molecular systems biology, ISSN 1744-4292, 2006, Volume 2, Issue 1, pp. 62 - n/a
C experiments | Metabolic engineering | Metabolic pathways | Fluxome | Network analysis | Radioactive Tracers | Signal Transduction | Carbon Radioisotopes - pharmacokinetics | Humans | Intracellular Fluid - diagnostic imaging | Biomedical Engineering | Biotechnology - methods | Animals | Models, Biological | Computer Simulation | Radionuclide Imaging | Metabolic Networks and Pathways - physiology | Metabolic Networks and Pathways - drug effects | Evolution, Molecular | Index Medicus
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