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Methods in molecular biology (Clifton, N.J.), ISSN 1064-3745, 2009, Volume 563, pp. 219 - 239
Cytoscape is a general network visualization, data integration, and analysis software package. Its development and use has been focused on the modeling... 
Computer Graphics | Systems Biology - methods | User-Computer Interface | Metabolic Networks and Pathways | Models, Biological | Computer Simulation | Software | Gene Regulatory Networks
Journal Article
Wiley Interdisciplinary Reviews: Systems Biology and Medicine, ISSN 1939-5094, 09/2015, Volume 7, Issue 5, pp. 317 - 334
Genome‐scale metabolic network reconstructions and constraint‐based analyses are powerful methods that have the potential to make functional predictions about... 
MEDICINE, RESEARCH & EXPERIMENTAL | SCALE RECONSTRUCTION | INTEGRATION | S. CEREVISIAE | GUT MICROBIOME | GROWTH | HOST | FLUX BALANCE ANALYSIS | EXPRESSION DATA | GENOME | SYSTEMS BIOLOGY | Metabolic Engineering | Metabolomics | Algorithms | Models, Biological | Microbial Consortia | Systems Biology | Metabolism | Genomes
Journal Article
Bioinformatics, ISSN 1367-4803, 05/2017, Volume 33, Issue 10, pp. 1545 - 1553
Journal Article
Journal of Cellular Physiology, ISSN 0021-9541, 11/2016, Volume 231, Issue 11, pp. 2339 - 2345
Metabolic network modeling of microbial communities provides an in-depth understanding of community-wide metabolic and regulatory processes. Compared to single... 
compartmentalized metabolic network | photoautotroph-heterotroph consortia | Mixed-bag metabolic network | metabolic dependencies
Journal Article
Biotechnology and Bioengineering, ISSN 0006-3592, 09/2005, Volume 91, Issue 5, pp. 534 - 545
Journal Article
PLoS Computational Biology, ISSN 1553-734X, 03/2019, Volume 15, Issue 3, p. e1006835
Journal Article
Cell Reports, ISSN 2211-1247, 12/2017, Volume 21, Issue 10, pp. 2965 - 2977
Metabolism is an emerging stem cell hallmark tied to cell fate, pluripotency, and self-renewal, yet systems-level understanding of stem cell metabolism has... 
systems biology | histone methylation | genome-scale modeling | stem cell biology | cell fate | primed state | metabolism | naive (ground) state | pluripotency | metabolic network | DERIVATION | MAINTENANCE | GLYCINE | METABOLOMICS | LIN28 | STATE | DIFFERENTIATION | NAIVE | LINES | CELL BIOLOGY | Metabolism | Systems biology | Histone methylation | Genome-scale modeling | Stem cell biology | Pluripotency
Journal Article