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1. Full Text Comparative genomic characterization of Francisella tularensis strains belonging to low and high virulence subspecies
by Champion, Mia D and Zeng, Qiandong and Nix, Eli B and Nano, Francis E and Keim, Paul and Kodira, Chinnappa D and Borowsky, Mark and Young, Sarah and Koehrsen, Michael and Engels, Reinhard and Pearson, Matthew and Howarth, Clint and Larson, Lisa and White, Jared and Alvarado, Lucia and Forsman, Mats and Bearden, Scott W and Sjöstedt, Anders and Titball, Richard and Michell, Stephen L and Birren, Bruce and Galagan, James and Medicinska fakulteten and Klinisk bakteriologi and Institutionen för klinisk mikrobiologi and Umeå universitet
PLoS Pathogens, ISSN 1553-7366, 05/2009, Volume 5, Issue 5, p. e1000459
Tularemia is a geographically widespread, severely debilitating, and occasionally lethal disease in humans. It is caused by infection by a gram-negative... 
OUTER-MEMBRANE | RESPONSE-REGULATOR | ESCHERICHIA-COLI | MICROBIOLOGY | LIVE VACCINE | PATHOGENICITY ISLAND | SECRETION SYSTEMS | BACTERIAL PATHOGENS | EVOLUTION | VIROLOGY | PSEUDOMONAS-AERUGINOSA | AGROBACTERIUM-TUMEFACIENS C58 | PARASITOLOGY | Comparative Genomic Hybridization | Genes, Bacterial - genetics | Virulence - genetics | Recombination, Genetic | Base Sequence | Francisella tularensis - pathogenicity | Francisella tularensis - genetics | Phylogeny | Francisella tularensis - isolation & purification | Demographic aspects | Genetic variation | Tularemia | Genetic aspects | Research | Health aspects | Risk factors | Francisella tularensis | Clinical Medicine | Basic Medicine | Medical and Health Sciences | Microbiology in the medical area | Medicin och hälsovetenskap | Infektionsmedicin | Medicinska och farmaceutiska grundvetenskaper | Infectious Medicine | Klinisk medicin | Mikrobiologi inom det medicinska området | agrobacterium-tumefaciens c58; pseudomonas-aeruginosa; pathogenicity island; response-regulator; escherichia-coli; bacterial pathogens; secretion systems; outer-membrane; live vaccine; evolution | Studies | Microbiology | Mortality | Phylogenetics | Genomes | Comparative analysis | Biological & chemical weapons
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2. The science and applications of microbial genomics
: workshop summary
by Choffnes, Eileen R., compiler and Olsen, LeighAnne, compiler and Wizemann, Theresa M. compiler and Institute of Medicine (U.S.). Forum on Microbial Threats, sponsoring body,issuing body and Board on Global Health and Institute of Medicine and Forum on Microbial Threats
2013, ISBN 9780309268196, xxiv, 403
Over the past several decades, new scientific tools and approaches for detecting microbial species have dramatically enhanced our appreciation of the diversity... 
Metagenomics | genetics | Genomics | Communicable diseases | Genetics, Microbial | Bacteria | Microbial genomics
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3. Pseudomonas syringae pathovars and related pathogens
: identification, epidemiology and genomics
by Fatmi, M'Barek
2008, 1. Aufl., ISBN 1402069006, xiii, 433
This book reports on recent advances on: (1) new methods and approaches for specific and sensitive detection and identification of Pseudomonas syringae and... 
Plantes | Bacterial diseases of plants | Pseudomonas syringae | Maladies bactériennes | Biology, life sciences | Life Sciences | Plant Pathology | Bacteriology | Plant Genetics & Genomics
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4. Full Text Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus
by Fedorova, Natalie D and Khaldi, Nora and Joardar, Vinita S and Maiti, Rama and Amedeo, Paolo and Anderson, Michael J and Crabtree, Jonathan and Silva, Joana C and Badger, Jonathan H and Albarraq, Ahmed and Angiuoli, Sam and Bussey, Howard and Bowyer, Paul and Cotty, Peter J and Dyer, Paul S and Egan, Amy and Galens, Kevin and Fraser-Liggett, Claire M and Haas, Brian J and Inman, Jason M and Kent, Richard and Lemieux, Sebastien and Malavazi, Iran and Orvis, Joshua and Roemer, Terry and Ronning, Catherine M and Sundaram, Jaideep P and Sutton, Granger and Turner, Geoff and Venter, J. Craig and White, Owen R and Whitty, Brett R and Youngman, Phil and Wolfe, Kenneth H and Goldman, Gustavo H and Wortman, Jennifer R and Jiang, Bo and Denning, David W and Nierman, William C
PLoS Genetics, ISSN 1553-7390, 04/2008, Volume 4, Issue 4, p. e1000046
We present the genome sequences of a new clinical isolate of the important human pathogen, Aspergillus fumigatus, A1163, and two closely related but rarely... 
PROGRAMMED CELL-DEATH | MAXIMUM-LIKELIHOOD | MAGNAPORTHE-ORYZAE | PHYLOGENETIC ANALYSIS | GENETICS & HEREDITY | RICE BLAST FUNGUS | CHROMOSOME ENDS | CRYPTOCOCCUS-NEOFORMANS | NEOSARTORYA-FISCHERI | HORIZONTAL GENE-TRANSFER | MULTIPLE SEQUENCE ALIGNMENT | Aspergillus fumigatus - classification | Aspergillus - classification | Species Specificity | Humans | Genomic Islands | Allergens - genetics | Fungal Proteins - genetics | Phylogeny | Aspergillus fumigatus - genetics | Aspergillus fumigatus - pathogenicity | Chromosomes, Fungal - genetics | Fungal Proteins - immunology | Genome, Fungal | Virulence - genetics | Eurotiales - genetics | Aspergillus fumigatus - physiology | Aspergillus - genetics | Aspergillus - physiology | Eurotiales - physiology | Eurotiales - classification | Evolution, Molecular | Fungi | Composting | Mortality | Genomics | Indoor air quality
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5. Full Text Bacterial genes in the aphid genome: Absence of functional gene transfer from Buchnera to its host
by Nikoh, Naruo and McCutcheon, John P and Kudo, Toshiaki and Miyagishima, Shin-Ya and Moran, Nancy A and Nakabachi, Atsushi
PLoS Genetics, ISSN 1553-7390, 02/2010, Volume 6, Issue 2, p. e1000827
Genome reduction is typical of obligate symbionts. In cellular organelles, this reduction partly reflects transfer of ancestral bacterial genes to the host... 
AMINO-ACID-METABOLISM | L-ALANINE AMIDASE | ENDOSYMBIOTIC BACTERIA | MIXED MODELS | CELL-WALL | ESCHERICHIA-COLI | GENETICS & HEREDITY | INTRACELLULAR BACTERIA | ACYRTHOSIPHON-PISUM | PEA APHID | CITROBACTER-FREUNDII AMPD | Gene Duplication | Aphids - microbiology | DNA Polymerase III - genetics | Genes, Bacterial - genetics | Glycoside Hydrolases - genetics | Molecular Sequence Data | Eukaryotic Cells - metabolism | Aphids - genetics | Polymerase Chain Reaction | Glycoside Hydrolases - chemistry | Buchnera - genetics | Amino Acid Sequence | Reproducibility of Results | Rickettsia - genetics | Muramidase - genetics | Bacterial Proteins - genetics | Gene Fusion | Carboxypeptidases - genetics | Buchnera - enzymology | N-Acetylmuramoyl-L-alanine Amidase - genetics | Animals | Host-Pathogen Interactions - genetics | Genome | Gene Transfer, Horizontal - genetics | N-Acetylmuramoyl-L-alanine Amidase - chemistry | Genetic transformation | Aphididae | Genetic aspects | Genomes | Research | Nucleotide sequencing | Bacterial genetics | Identification and classification | Methods | Microbiology | Insects | Genes | Colleges & universities | Phylogenetics | Bacteria | Plastids
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6. Full Text An insect herbivore microbiome with high plant Biomass-degrading capacity
by Suen, Garret and Scott, Jarrod J and Aylward, Frank O and Adams, Sandra M and Tringe, Susannah G and Pinto-Tomás, Adrián A and Foster, Clifton E and Pauly, Markus and Weimer, Paul J and Barry, Kerrie W and Goodwin, Lynne A and Bouffard, Pascal and Li, Lewyn and Osterberger, Jolene and Harkins, Timothy T and Slater, Steven C and Donohue, Timothy J and Currie, Cameron R
PLoS Genetics, ISSN 1553-7390, 09/2010, Volume 6, Issue 9, p. e1001129
Herbivores can gain indirect access to recalcitrant carbon present in plant cell walls through symbiotic associations with lignocellulolytic microbes. A... 
BACTERIAL COMMUNITY | FUNGUS GARDENS | COMPARATIVE METAGENOMICS | GENE | DATABASE | SEQUENCE DATA | GUT MICROBIOME | GENETICS & HEREDITY | LEAF-CUTTING ANTS | DIVERSITY | CELLULOSE | Carbohydrate Metabolism - genetics | Molecular Sequence Data | Biomass | Phylogeny | Ants - microbiology | Biopolymers - metabolism | Fungi - genetics | Feeding Behavior - physiology | Metagenome - genetics | Animals | Plant Leaves - metabolism | Cattle | Cluster Analysis | Enzymes | Genetic aspects | Research | Herbivores | Biomass energy | Genes | Fungi | Deconstruction | Leaves | Microbiology | Biodiesel fuels | Bacteria | Genomes | Polymers | Carbon | Gardens & gardening
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7. Ecological genomics
: ecology and the evolution of genes and genomes
by Landry, Christian R., editor of compilation and Aubin-Horth, Nadia, editor of compilation
2014, 2014, Advances in experimental medicine and biology, ISBN 9789400773462, Volume 781, vi, 359 pages
"Researchers in the field of ecological genomics aim to determine how a genome or a population of genomes interacts with its environment across ecological and... 
Biological Evolution | Ecology | Ecological genetics | Genomics | Life Sciences | Gene Function | Microbial Genetics and Genomics | Molecular Ecology | Evolutionary Biology | Bioinformatics | Animal Genetics and Genomics | Genomes
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8. Full Text Comprehensive functional analysis of Mycobacterium tuberculosis toxin-antitoxin systems: Implications for pathogenesis, stress responses, and evolution
by Ramage, Holly R and Connolly, Lynn E and Cox, Jeffery S
PLoS Genetics, ISSN 1553-7390, 12/2009, Volume 5, Issue 12, pp. e1000767 - e1000767
Toxin-antitoxin (TA) systems, stress-responsive genetic elements ubiquitous in microbial genomes, are unusually abundant in the major human pathogen... 
GENETIC REQUIREMENTS | MESSENGER-RNA INTERFERASES | ACQUIRED GENOMIC ISLANDS | PERSISTENCE | ESCHERICHIA-COLI | GENETICS & HEREDITY | HYPOXIC RESPONSE | LOCI | MEDIATED CELL-DEATH | TRANSLATION | FAMILY | Biological Evolution | Mycobacterium tuberculosis - pathogenicity | Bacterial Toxins - metabolism | Gene Expression | Genome, Bacterial | Antitoxins - metabolism | Mycobacterium tuberculosis - metabolism | Mycobacterium tuberculosis - genetics | Genetic aspects | Messenger RNA | Research | Mycobacterium tuberculosis | Macrophages | Pathogenesis | Toxicity | Genes | Leprosy | Infections | Genomes | Experiments | Tuberculosis | Antibiotics | E coli | Bacteria | Hypoxia | Evolution | Standard deviation
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9. Full Text Variations in stress sensitivity and genomic expression in diverse S. cerevisiae isolates
by Kvitek, Daniel J and Will, Jessica L and Gasch, Audrey P
PLoS Genetics, ISSN 1553-7390, 10/2008, Volume 4, Issue 10, p. e1000223
Interactions between an organism and its environment can significantly influence phenotypic evolution. A first step toward understanding this process is to... 
STRAINS | POPULATION GENETIC-VARIATION | WINE | ANEUPLOIDY | EVOLUTION | BUDDING YEAST | GENETICS & HEREDITY | QUANTITATIVE TRAIT LOCUS | COPPER RESISTANCE | MICROARRAYS | SACCHAROMYCES-CEREVISIAE | Genetic Variation | Gene Expression | Phenotype | Saccharomyces cerevisiae - physiology | Genome, Fungal | Saccharomyces cerevisiae - genetics | Ecosystem | Environment | Gene Dosage | Phylogeny | Saccharomyces cerevisiae - isolation & purification | Studies | Ratios | Yeast | Microbiology | Genomics | Biology | Standard deviation | Hybridization | Gene expression | Wineries & vineyards | Evolution & development
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10. Full Text Fungal Genomics
: Methods and Protocols
2018, 2nd ed. 2018, Methods in Molecular Biology, ISBN 1493978039, Volume 1775
Life Sciences | Microbiology
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11. Full Text Helminth genomics: The implications for human health
by Brindley, Paul J and Mitreva, Makedonka and Ghedin, Elodie and Lustigman, Sara
PLoS Neglected Tropical Diseases, ISSN 1935-2735, 10/2009, Volume 3, Issue 10, p. e538
More than two billion people (one-third of humanity) are infected with parasitic roundworms or flatworms, collectively known as helminth parasites. These... 
GROWTH-FACTOR-BETA | SCHISTOSOMA-MANSONI | STRONGYLOIDES-STERCORALIS | NEGLECTED TROPICAL DISEASES | FILARIAL NEMATODE | GENE-EXPRESSION | TRICHINELLA-SPIRALIS | PHYLUM NEMATODA | TRICHURIS-SUIS THERAPY | BRUGIA-MALAYI | PARASITOLOGY | TROPICAL MEDICINE | Genome, Helminth | Helminths - immunology | Animals | Helminths - genetics | Genomics | Humans | Helminthiasis - immunology | Host-Parasite Interactions | Phylogeny | Helminths - classification | Helminthiasis - parasitology | Biomedical research | Yeast | Mortality | Genomes | Parasites | Vaccines | Drug resistance | Tropical diseases | Acquired immune deficiency syndrome--AIDS | Human immunodeficiency virus--HIV | Phylogenetics | Genetics | AIDS | Acquired immune deficiency syndrome | HIV | Human immunodeficiency virus
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