Research in Microbiology, ISSN 0923-2508, 10/2015, Volume 166, Issue 8, pp. 644 - 654
is a subset of single-stranded DNA (ssDNA) viruses infecting bacteria. This group of phages has been previously observed to be very abundant (representing >90%...
Lakes | Microviridae | Viruses | Structure | ssDNA virus | Diversity | MAXIMUM-LIKELIHOOD | BACTERIOPHAGES | MICROBIOLOGY | TEMPERATE | METAGENOMIC ANALYSIS | ABUNDANCE | STRANDED-DNA PHAGES | AMPLIFICATION | COMMUNITY | CYANOPHAGES | PHYTOPLANKTON | Microviridae - classification | Bacteroidetes - virology | Phylogeny | Microbial Consortia | Sequence Analysis, DNA | Microviridae - growth & development | Genetic Variation | Lakes - virology | Time Factors | Ecosystem | Polymerase Chain Reaction | France | Microviridae - genetics | Water Microbiology | Capsid Proteins - genetics
Lakes | Microviridae | Viruses | Structure | ssDNA virus | Diversity | MAXIMUM-LIKELIHOOD | BACTERIOPHAGES | MICROBIOLOGY | TEMPERATE | METAGENOMIC ANALYSIS | ABUNDANCE | STRANDED-DNA PHAGES | AMPLIFICATION | COMMUNITY | CYANOPHAGES | PHYTOPLANKTON | Microviridae - classification | Bacteroidetes - virology | Phylogeny | Microbial Consortia | Sequence Analysis, DNA | Microviridae - growth & development | Genetic Variation | Lakes - virology | Time Factors | Ecosystem | Polymerase Chain Reaction | France | Microviridae - genetics | Water Microbiology | Capsid Proteins - genetics
Journal Article
Cell, ISSN 0092-8674, 01/2015, Volume 160, Issue 3, pp. 447 - 460
Decreases in the diversity of enteric bacterial populations are observed in patients with Crohn’s disease (CD) and ulcerative colitis (UC). Less is known about...
BACTERIAL PATHOGENS | FECAL MICROBIOTA TRANSPLANTATION | CROHNS-DISEASE | BIOCHEMISTRY & MOLECULAR BIOLOGY | ULCERATIVE-COLITIS | HUMAN GUT VIROME | STAPHYLOCOCCUS-AUREUS | CYSTIC-FIBROSIS | SEQUENCING DATA | METAGENOMIC ANALYSIS | ANTIBIOTICS INDUCE | CELL BIOLOGY | Colitis, Ulcerative - virology | Humans | Crohn Disease - virology | Dysbiosis - microbiology | Case-Control Studies | Dysbiosis - virology | Feces - microbiology | Feces - virology | Bacteria - classification | Caudovirales - genetics | Colitis, Ulcerative - therapy | Caudovirales - isolation & purification | Crohn Disease - microbiology | Colitis, Ulcerative - pathology | Microviridae - isolation & purification | Bacteria - genetics | Dysbiosis - therapy | Crohn Disease - therapy | Bacteria - isolation & purification | Colitis, Ulcerative - microbiology | Crohn Disease - pathology | Dysbiosis - pathology | Microviridae - genetics | Metagenome | Cohort Studies | Analysis | Ulcerative colitis
BACTERIAL PATHOGENS | FECAL MICROBIOTA TRANSPLANTATION | CROHNS-DISEASE | BIOCHEMISTRY & MOLECULAR BIOLOGY | ULCERATIVE-COLITIS | HUMAN GUT VIROME | STAPHYLOCOCCUS-AUREUS | CYSTIC-FIBROSIS | SEQUENCING DATA | METAGENOMIC ANALYSIS | ANTIBIOTICS INDUCE | CELL BIOLOGY | Colitis, Ulcerative - virology | Humans | Crohn Disease - virology | Dysbiosis - microbiology | Case-Control Studies | Dysbiosis - virology | Feces - microbiology | Feces - virology | Bacteria - classification | Caudovirales - genetics | Colitis, Ulcerative - therapy | Caudovirales - isolation & purification | Crohn Disease - microbiology | Colitis, Ulcerative - pathology | Microviridae - isolation & purification | Bacteria - genetics | Dysbiosis - therapy | Crohn Disease - therapy | Bacteria - isolation & purification | Colitis, Ulcerative - microbiology | Crohn Disease - pathology | Dysbiosis - pathology | Microviridae - genetics | Metagenome | Cohort Studies | Analysis | Ulcerative colitis
Journal Article
ISME Journal, ISSN 1751-7362, 04/2014, Volume 8, Issue 10, pp. 2093 - 2103
The small single-stranded DNA (ssDNA) bacteriophages of the subfamily Gokushovirinae were traditionally perceived as narrowly targeted, niche-specific viruses...
gokushovirus | Microviridae | single-stranded | phage | virus | VISUALIZATION | MAXIMUM-LIKELIHOOD | BACTERIOPHAGE | UCSF CHIMERA | MARINE VIRUSES | MICROBIOLOGY | RNA VIRUSES | METAGENOMIC ANALYSIS | ATOMIC-STRUCTURE | GENE | SEQUENCE | ECOLOGY | DNA, Viral - chemistry | Capsid Proteins - classification | Environmental Microbiology | Microviridae - classification | Polymerase Chain Reaction | Phylogeny | Biodiversity | Microviridae - genetics | DNA, Single-Stranded - chemistry | Capsid Proteins - genetics | Original
gokushovirus | Microviridae | single-stranded | phage | virus | VISUALIZATION | MAXIMUM-LIKELIHOOD | BACTERIOPHAGE | UCSF CHIMERA | MARINE VIRUSES | MICROBIOLOGY | RNA VIRUSES | METAGENOMIC ANALYSIS | ATOMIC-STRUCTURE | GENE | SEQUENCE | ECOLOGY | DNA, Viral - chemistry | Capsid Proteins - classification | Environmental Microbiology | Microviridae - classification | Polymerase Chain Reaction | Phylogeny | Biodiversity | Microviridae - genetics | DNA, Single-Stranded - chemistry | Capsid Proteins - genetics | Original
Journal Article
eLife, ISSN 2050-084X, 2014, Volume 3, p. e03125
Viruses modulate microbial communities and alter ecosystem functions. However, due to cultivation bottlenecks specific virus-host interaction dynamics remain...
ecology | viruses | infectious disease | viral dark matter | bacteriophages | microbiology | SUP05 | single cell genomics | oxygen minimum zone | PHYLOGENY | PHOTOSYNTHESIS GENES | METAGENOME | MARINE VIRUSES | CLASSIFICATION | COMMUNITIES | DISSIMILATORY SULFITE REDUCTASE | OXYGEN-MINIMUM ZONES | BIOLOGY | RESISTANCE | SURFACE | oxygen minimum zones | Genome, Viral - genetics | Genomics | Gammaproteobacteria - classification | Seawater - chemistry | Phylogeny | Microviridae - physiology | Oxygen - metabolism | DNA, Single-Stranded - genetics | Metagenome - genetics | Seawater - virology | Ecosystem | Caudovirales - genetics | Gammaproteobacteria - genetics | Microviridae - metabolism | Caudovirales - physiology | Sulfur - metabolism | Seawater - microbiology | Caudovirales - metabolism | British Columbia | Ecology | Gammaproteobacteria - virology | Host-Pathogen Interactions | Genome, Bacterial - genetics | Microviridae - genetics | Evolution, Molecular | Assimilation | Energy metabolism | Oxygen | Ecosystems | Genes | Viruses | Genomes | Metabolism | Nitrogen | Carbon | Sulfite | Bacteria | Software | Sulfur | Bioinformatics | New genera | Sulfite reductase | Reductase
ecology | viruses | infectious disease | viral dark matter | bacteriophages | microbiology | SUP05 | single cell genomics | oxygen minimum zone | PHYLOGENY | PHOTOSYNTHESIS GENES | METAGENOME | MARINE VIRUSES | CLASSIFICATION | COMMUNITIES | DISSIMILATORY SULFITE REDUCTASE | OXYGEN-MINIMUM ZONES | BIOLOGY | RESISTANCE | SURFACE | oxygen minimum zones | Genome, Viral - genetics | Genomics | Gammaproteobacteria - classification | Seawater - chemistry | Phylogeny | Microviridae - physiology | Oxygen - metabolism | DNA, Single-Stranded - genetics | Metagenome - genetics | Seawater - virology | Ecosystem | Caudovirales - genetics | Gammaproteobacteria - genetics | Microviridae - metabolism | Caudovirales - physiology | Sulfur - metabolism | Seawater - microbiology | Caudovirales - metabolism | British Columbia | Ecology | Gammaproteobacteria - virology | Host-Pathogen Interactions | Genome, Bacterial - genetics | Microviridae - genetics | Evolution, Molecular | Assimilation | Energy metabolism | Oxygen | Ecosystems | Genes | Viruses | Genomes | Metabolism | Nitrogen | Carbon | Sulfite | Bacteria | Software | Sulfur | Bioinformatics | New genera | Sulfite reductase | Reductase
Journal Article
Applied and Environmental Microbiology, ISSN 0099-2240, 2015, Volume 81, Issue 12, pp. 3934 - 3945
The potential dependence of virus populations on soil types was examined by electron microscopy, and the total abundance of virus particles in four soil types...
COMPARATIVE METAGENOMICS | BACTERIA | LYSOGENY | AMPLIFICATION | ENVIRONMENTS | DRAGONFLIES | VIRAL COMMUNITY | PHAGES | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | MICROBIOLOGY | DIVERSITY | ABUNDANCE | Genome, Viral | Metagenomics | Microviridae - classification | Soil Microbiology | Scotland | Microviridae - isolation & purification | Phylogeny | Biodiversity | Sequence Analysis, DNA | DNA Viruses - genetics | DNA Viruses - isolation & purification | DNA, Single-Stranded - genetics | Soil - classification | Circoviridae - classification | Virion - isolation & purification | Base Sequence | Ireland | DNA Viruses - classification | Virion - classification | DNA, Viral - genetics | Microviridae - genetics | Circoviridae - genetics | Circoviridae - isolation & purification | Capsid Proteins - genetics | Evolutionary and Genomic Microbiology
COMPARATIVE METAGENOMICS | BACTERIA | LYSOGENY | AMPLIFICATION | ENVIRONMENTS | DRAGONFLIES | VIRAL COMMUNITY | PHAGES | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | MICROBIOLOGY | DIVERSITY | ABUNDANCE | Genome, Viral | Metagenomics | Microviridae - classification | Soil Microbiology | Scotland | Microviridae - isolation & purification | Phylogeny | Biodiversity | Sequence Analysis, DNA | DNA Viruses - genetics | DNA Viruses - isolation & purification | DNA, Single-Stranded - genetics | Soil - classification | Circoviridae - classification | Virion - isolation & purification | Base Sequence | Ireland | DNA Viruses - classification | Virion - classification | DNA, Viral - genetics | Microviridae - genetics | Circoviridae - genetics | Circoviridae - isolation & purification | Capsid Proteins - genetics | Evolutionary and Genomic Microbiology
Journal Article
Virology, ISSN 0042-6822, 2016, Volume 491, pp. 45 - 55
Abstract The Microviridae , comprised of ssDNA, icosahedral bacteriophages, are a model system for studying morphogenesis and the evolution of assembly....
Infectious Disease | Virus | Microvirus | phiX174 | Microviridae | Virus evolution | Bacteriophage | Assembly | PhiX174 | MOLECULAR CHARACTERIZATION | MULTIFUNCTIONAL ENZYME | CHLAMYDIAPHAGE CHP2 | DNA-REPLICATION | ATOMIC-STRUCTURE | GENOME SEQUENCE | VIROLOGY | BACTERIOPHAGE PHI-X174 | VIRAL-DNA | INTERNAL SCAFFOLDING PROTEINS | NUCLEOTIDE-SEQUENCE | Biological Evolution | Virion - physiology | Models, Molecular | Viral Proteins - genetics | Virion - genetics | Biodiversity | Microviridae - genetics | Virus Assembly | Microviridae - physiology | Viral Proteins - metabolism | Proteins | Analysis
Infectious Disease | Virus | Microvirus | phiX174 | Microviridae | Virus evolution | Bacteriophage | Assembly | PhiX174 | MOLECULAR CHARACTERIZATION | MULTIFUNCTIONAL ENZYME | CHLAMYDIAPHAGE CHP2 | DNA-REPLICATION | ATOMIC-STRUCTURE | GENOME SEQUENCE | VIROLOGY | BACTERIOPHAGE PHI-X174 | VIRAL-DNA | INTERNAL SCAFFOLDING PROTEINS | NUCLEOTIDE-SEQUENCE | Biological Evolution | Virion - physiology | Models, Molecular | Viral Proteins - genetics | Virion - genetics | Biodiversity | Microviridae - genetics | Virus Assembly | Microviridae - physiology | Viral Proteins - metabolism | Proteins | Analysis
Journal Article
Environmental Microbiology, ISSN 1462-2912, 10/2015, Volume 17, Issue 10, pp. 3708 - 3721
Summary Methane seep microbial communities perform a key ecosystem service by consuming the greenhouse gas methane prior to its release into the hydrosphere,...
GULF-OF-MEXICO | MAXIMUM-LIKELIHOOD | EEL RIVER-BASIN | PHYLOGENETIC ANALYSIS | MARINE VIRUSES | MICROBIOLOGY | STRANDED-DNA VIRUSES | HYDROTHERMAL VENTS | MULTIPLE DISPLACEMENT AMPLIFICATION | HYDRATE RIDGE | COLD SEEPS | Metagenomics | Methane - metabolism | Microviridae - classification | Microviridae - isolation & purification | Sequence Analysis, DNA | Geologic Sediments - microbiology | Base Sequence | Ecosystem | DNA, Viral - genetics | Geologic Sediments - virology | Microviridae - genetics | Enterobacteriaceae - virology | Metagenome | Proteins | Methane | Orphans | Ecosystems | Genomics | Eels | Air pollution | Phylogeny | Greenhouse gases | Sediments (Geology)
GULF-OF-MEXICO | MAXIMUM-LIKELIHOOD | EEL RIVER-BASIN | PHYLOGENETIC ANALYSIS | MARINE VIRUSES | MICROBIOLOGY | STRANDED-DNA VIRUSES | HYDROTHERMAL VENTS | MULTIPLE DISPLACEMENT AMPLIFICATION | HYDRATE RIDGE | COLD SEEPS | Metagenomics | Methane - metabolism | Microviridae - classification | Microviridae - isolation & purification | Sequence Analysis, DNA | Geologic Sediments - microbiology | Base Sequence | Ecosystem | DNA, Viral - genetics | Geologic Sediments - virology | Microviridae - genetics | Enterobacteriaceae - virology | Metagenome | Proteins | Methane | Orphans | Ecosystems | Genomics | Eels | Air pollution | Phylogeny | Greenhouse gases | Sediments (Geology)
Journal Article
The ISME Journal, ISSN 1751-7362, 05/2011, Volume 5, Issue 5, pp. 822 - 830
Knowledge of marine phages is highly biased toward double-stranded DNA (dsDNA) phages; however, recent metagenomic surveys have also identified single-stranded...
Microviridae | Marine | single-stranded DNA | phage | virus | MAXIMUM-LIKELIHOOD | BACTERIOPHAGE | POLYMERASE GENE-SEQUENCES | COMMUNITIES | RNA VIRUSES | marine | GENOME SEQUENCE | EVOLUTION | VIRAL-DNA | MARINE-ENVIRONMENT | ECOLOGY | NUCLEOTIDE-SEQUENCE | Geography | Genome, Viral | Microviridae - classification | Atlantic Ocean | Biodiversity | Sequence Analysis, DNA | DNA, Single-Stranded - genetics | Seawater - virology | Time Factors | Base Composition | Genes, Viral | Trans-Activators - genetics | DNA, Viral - genetics | Microviridae - genetics | DNA Helicases - genetics | Metagenome | Water Microbiology | Oceans | Water column | Phages | Replication initiation | Amino acid sequence | Data processing | Genetic distance | Genomes | Guanylate cyclase | Polymerase chain reaction | rep gene | Virions | Host range | Evolution | Marine ecosystems | Sampling | Original
Microviridae | Marine | single-stranded DNA | phage | virus | MAXIMUM-LIKELIHOOD | BACTERIOPHAGE | POLYMERASE GENE-SEQUENCES | COMMUNITIES | RNA VIRUSES | marine | GENOME SEQUENCE | EVOLUTION | VIRAL-DNA | MARINE-ENVIRONMENT | ECOLOGY | NUCLEOTIDE-SEQUENCE | Geography | Genome, Viral | Microviridae - classification | Atlantic Ocean | Biodiversity | Sequence Analysis, DNA | DNA, Single-Stranded - genetics | Seawater - virology | Time Factors | Base Composition | Genes, Viral | Trans-Activators - genetics | DNA, Viral - genetics | Microviridae - genetics | DNA Helicases - genetics | Metagenome | Water Microbiology | Oceans | Water column | Phages | Replication initiation | Amino acid sequence | Data processing | Genetic distance | Genomes | Guanylate cyclase | Polymerase chain reaction | rep gene | Virions | Host range | Evolution | Marine ecosystems | Sampling | Original
Journal Article
Journal of General Virology, ISSN 0022-1317, 07/2011, Volume 92, Issue 7, pp. 1733 - 1737
Members of the family Microviridae have been identified in a number of chlamydial species infecting humans (phage CPAR39 in Chlamydophila pneumoniae), other...
SPIROPLASMA VIRUS | GENOME SEQUENCE | PROTEIN | BACTERIOPHAGE | VIROLOGY | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | PURIFICATION | PIG INCLUSION CONJUNCTIVITIS | OBLIGATE INTRACELLULAR BACTERIUM | PSITTACI | INFECTION | STRAIN | Amino Acid Sequence | Chlamydophila - virology | Microviridae - classification | Viral Proteins - chemistry | Open Reading Frames | Molecular Sequence Data | Viral Proteins - genetics | Microviridae - isolation & purification | Phylogeny | Sequence Analysis, DNA | Sequence Alignment | Microviridae - chemistry | Microviridae - genetics
SPIROPLASMA VIRUS | GENOME SEQUENCE | PROTEIN | BACTERIOPHAGE | VIROLOGY | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | PURIFICATION | PIG INCLUSION CONJUNCTIVITIS | OBLIGATE INTRACELLULAR BACTERIUM | PSITTACI | INFECTION | STRAIN | Amino Acid Sequence | Chlamydophila - virology | Microviridae - classification | Viral Proteins - chemistry | Open Reading Frames | Molecular Sequence Data | Viral Proteins - genetics | Microviridae - isolation & purification | Phylogeny | Sequence Analysis, DNA | Sequence Alignment | Microviridae - chemistry | Microviridae - genetics
Journal Article
Viruses, ISSN 1999-4915, 08/2018, Volume 10, Issue 8, p. 404
Phages (viruses that infect bacteria) play important roles in the gut ecosystem through infection of bacterial hosts, yet the gut virome remains poorly...
Invertebrate | Virome | Gut | Microviridae | Ciona | ssDNA | Microbiome | Phage | VIRAL COMMUNITY | gut | GENOMIC ANALYSIS | MARINE VIRUSES | HOST | microbiome | virome | AMPLIFICATION | VIROLOGY | BACTERIAL MICROBIOME | DYNAMICS | STRANDED-DNA VIRUSES | invertebrate | INTESTINALIS | phage | Gastrointestinal Tract - virology | Microviridae - isolation & purification | Phylogeny | Gastrointestinal Microbiome - genetics | Sequence Analysis, DNA | Genetic Variation | Animals | Bacteriophages - genetics | DNA, Single-Stranded | DNA, Viral - genetics | Microviridae - genetics | Ciona intestinalis - virology | Capsid Proteins - genetics
Invertebrate | Virome | Gut | Microviridae | Ciona | ssDNA | Microbiome | Phage | VIRAL COMMUNITY | gut | GENOMIC ANALYSIS | MARINE VIRUSES | HOST | microbiome | virome | AMPLIFICATION | VIROLOGY | BACTERIAL MICROBIOME | DYNAMICS | STRANDED-DNA VIRUSES | invertebrate | INTESTINALIS | phage | Gastrointestinal Tract - virology | Microviridae - isolation & purification | Phylogeny | Gastrointestinal Microbiome - genetics | Sequence Analysis, DNA | Genetic Variation | Animals | Bacteriophages - genetics | DNA, Single-Stranded | DNA, Viral - genetics | Microviridae - genetics | Ciona intestinalis - virology | Capsid Proteins - genetics
Journal Article
11.
Full Text
Fitness benefits of low infectivity in a spatially structured population of bacteriophages
Proceedings of the Royal Society B: Biological Sciences, ISSN 0962-8452, 11/2013, Volume 281, Issue 1774, pp. 20132563 - 20132563
For a parasite evolving in a spatially structured environment, an evolutionarily advantageous strategy may be to reduce its transmission rate or infectivity....
Bacteriophages | Evolution | Adsorption | Spatial structure | spatial structure | PHI-X174 | adsorption | PATHOGEN | bacteriophages | ENVIRONMENT | LYSIS | evolution | PLAQUE | VIRAL ADAPTATION | EVOLUTIONARY BIOLOGY | INVASION | EXPERIMENTAL EVOLUTION | BIOLOGY | LIFE-HISTORY | ECOLOGY | OPTIMALITY | Biological Evolution | Host-Pathogen Interactions | Phenotype | Escherichia coli - virology | Models, Biological | Microviridae - pathogenicity | Environment | Mutation | Microviridae - genetics | Microviridae - ultrastructure | 1001
Bacteriophages | Evolution | Adsorption | Spatial structure | spatial structure | PHI-X174 | adsorption | PATHOGEN | bacteriophages | ENVIRONMENT | LYSIS | evolution | PLAQUE | VIRAL ADAPTATION | EVOLUTIONARY BIOLOGY | INVASION | EXPERIMENTAL EVOLUTION | BIOLOGY | LIFE-HISTORY | ECOLOGY | OPTIMALITY | Biological Evolution | Host-Pathogen Interactions | Phenotype | Escherichia coli - virology | Models, Biological | Microviridae - pathogenicity | Environment | Mutation | Microviridae - genetics | Microviridae - ultrastructure | 1001
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