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Journal Article
Nature methods, ISSN 1548-7105, 2014, Volume 11, Issue 3, pp. 294 - 296
.... Here we present genome-wide annotation of variants (GWAVA), a tool that supports prioritization of noncoding variants by integrating various genomic and epigenomic... 
DATABASE | BIOCHEMICAL RESEARCH METHODS | Genetic Variation | Algorithms | Untranslated Regions - genetics | Computer Simulation | Humans | Molecular Sequence Annotation | Noncoding DNA | Physiological aspects | Genomes | Research | Genetics | Genomics
Journal Article
Nucleic acids research, ISSN 1362-4962, 2017, Volume 45, Issue W1, pp. W6 - W11
We have developed the web application GeSeq (https://chlorobox.mpimp-golm.mpg.de/geseq.html) for the rapid and accurate annotation of organellar genome sequences, in particular chloroplast genomes... 
TRANSFER-RNA GENES | MAPS | BIOCHEMISTRY & MOLECULAR BIOLOGY | MUSCLE | PLANTS | MULTIPLE SEQUENCE ALIGNMENT | MITOCHONDRIAL GENOMES | NUCLEOTIDE-SEQUENCES | PROGRAM | TOOL | Web Server Issue
Journal Article
Bioinformatics, ISSN 1367-4803, 07/2014, Volume 30, Issue 14, pp. 2068 - 2069
.... The subsequent de novo assembly of reads into contigs has been well addressed. The final step of annotating all relevant genomic features on those contigs can be achieved... 
BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | Genome, Bacterial | Molecular Sequence Annotation - methods | Software | Genomics - methods | Sequence Analysis, DNA
Journal Article
Nucleic acids research, ISSN 1362-4962, 2016, Volume 44, Issue D1, pp. D733 - D745
The RefSeq project at the National Center for Biotechnology Information (NCBI) maintains and curates a publicly available database of annotated genomic, transcript, and protein sequence records (http://www.ncbi.nlm.nih.gov/refseq... 
FAMILIES | BIOCHEMISTRY & MOLECULAR BIOLOGY | GENOME ANNOTATION | FUTURE | IDENTIFICATION | MICROBIAL GENOMES | COMPARISON PASC | INSIGHTS | TOOL | Genome, Viral | Vertebrates - genetics | Humans | Molecular Sequence Annotation | Genomics - standards | Databases, Genetic | Invertebrates - genetics | Rats | Gene Expression Profiling | RNA, Long Noncoding - genetics | Genome, Plant | Phylogeny | Genome, Microbial | Nematoda - genetics | Sequence Analysis, Protein | Reference Standards | Animals | Sequence Analysis, RNA | Genome, Fungal | Cattle | Mice | Genome, Human | Database Issue
Journal Article
Nucleic acids research, ISSN 1362-4962, 2016, Volume 44, Issue 14, pp. 6614 - 6624
.... To meet the challenge of timely interpretation of structure, function and meaning of this vast genetic information, a comprehensive approach to automatic genome annotation is critically needed... 
RESOURCES | DATABASE | BIOCHEMISTRY & MOLECULAR BIOLOGY | PAN-GENOME | CLASSIFICATION | MICROBIAL GENOMES | PREDICTION | Genes, Bacterial | Genome, Bacterial | Prokaryotic Cells - metabolism | Molecular Sequence Annotation | Bacterial Proteins - chemistry | Bacteria - genetics | Databases, Nucleic Acid | Computational Biology
Journal Article
Nucleic acids research, ISSN 1362-4962, 2016, Volume 44, Issue D1, pp. D457 - D462
KEGG (http://www.kegg.jp/or http://www.genome.jp/kegg/) is an integrated database resource for biological interpretation of genome sequences and other high-throughput data... 
SEQUENCES | BIOCHEMISTRY & MOLECULAR BIOLOGY | GENOME ANNOTATION | Proteins - genetics | Amino Acid Sequence | Drug Resistance, Microbial | Viruses - genetics | Metabolic Networks and Pathways | Genes | Molecular Sequence Annotation | Plasmids - genetics | Databases, Genetic | Genome | Database Issue
Journal Article
Plant physiology (Bethesda), ISSN 1532-2548, 2019, Volume 179, Issue 1, pp. 38 - 54
Journal Article
Nucleic acids research, ISSN 1362-4962, 2011, Volume 40, Issue D1, pp. D130 - D135
The National Center for Biotechnology Information (NCBI) Reference Sequence (RefSeq) database is a collection of genomic, transcript and protein sequence records... 
DATABASE | RESOURCES | BIOCHEMISTRY & MOLECULAR BIOLOGY | Sequence Analysis, Protein - standards | Reference Standards | Humans | Molecular Sequence Annotation | Genomics - standards | Databases, Genetic | Sequence Analysis, DNA - standards | Sequence Analysis - standards | Sequence Analysis, RNA - standards
Journal Article
Nucleic acids research, ISSN 1362-4962, 2014, Volume 42, Issue D1, pp. D68 - D73
.... In the face of these increases, and a range of microRNA annotation methods and criteria, maintaining the quality of the microRNA sequence data set is a significant challenge... 
WIKI | CURATION | PATHWAY | EXPRESSION | ARCHIVE | BIOCHEMISTRY & MOLECULAR BIOLOGY | Animals | Sequence Analysis, RNA | Humans | Molecular Sequence Annotation | High-Throughput Nucleotide Sequencing | Mice | Internet | Databases, Nucleic Acid | MicroRNAs - chemistry | I. Nucleic acid sequence, structure and regulation
Journal Article