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1. Full Text Microbial typing by matrix-assisted laser desorption ionization-time of flight mass spectrometry: Do we need guidance for data interpretation?
by Spinali, Sébastien and Van Belkum, Alex and Goering, Richard V and Girard, Victoria and Welker, Martin and Van Nuenen, Marc and Pincus, David H and Arsac, Maud and Durand, Géraldine
Journal of Clinical Microbiology, ISSN 0095-1137, 03/2015, Volume 53, Issue 3, pp. 760 - 765
The integration of matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS) in clinical microbiology has revolutionized... 
SYSTEM | STREPTOCOCCUS-PNEUMONIAE | PERFORMANCE | ESCHERICHIA-COLI | MICROBIOLOGY | STAPHYLOCOCCUS-AUREUS | DIFFERENTIATION | IDENTIFICATION | Mycological Typing Techniques - standards | Guidelines as Topic | Bacteria - chemistry | Fungi - classification | Humans | Bacteria - classification | Mycological Typing Techniques - methods | Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization - methods | Fungi - chemistry | Bacterial Typing Techniques - standards | Bacterial Typing Techniques - methods | Minireview
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2. Full Text MALDI‐TOF‐MS‐based species identification and typing approaches in medical mycology
by Bader, Oliver
PROTEOMICS, ISSN 1615-9853, 03/2013, Volume 13, Issue 5, pp. 788 - 799
MALDI‐TOF MS‐based species identification has found its place in many clinical routine diagnostic laboratories over the past years. Several well‐established... 
Fungi | Intact cell MS | Microbiology | Species identification | Mycology | DESORPTION-IONIZATION-TIME | ROUTINE IDENTIFICATION | ASSISTED-LASER-DESORPTION/IONIZATION | BIOCHEMISTRY & MOLECULAR BIOLOGY | BIOCHEMICAL RESEARCH METHODS | BACTERIAL IDENTIFICATION | FLIGHT MASS-SPECTROMETRY | BLOOD CULTURE BOTTLES | MICROBIOLOGY LABORATORIES | CRYPTOCOCCUS-NEOFORMANS | RAPID IDENTIFICATION | CANDIDA-GUILLIERMONDII | Fungi - classification | Humans | Molecular Typing - methods | Mycological Typing Techniques - methods | Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization - methods | Fungi - chemistry | Fungemia - microbiology
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3. Full Text Consensus multi-locus sequence typing scheme for Cryptococcus neoformans and Cryptococcus gattii
by Meyer, Wieland and Aanensen, David M and Boekhout, Teun and Cogliati, Massimo and Diaz, Mara R and Esposto, Maria Carmela and Fisher, Matthew and Gilgado, Felix and Hagen, Ferry and Kaocharoen, Sirada and Litvintseva, Anastasia P and Mitchell, Thomas G and Simwami, Sitali P and Trilles, Luciana and Viviani, Maria Anna and Kwon-Chung, June
Medical Mycology, ISSN 1369-3786, 2009, Volume 47, Issue 6, pp. 561 - 570
This communication describes the consensus multi-locus typing scheme established by the Cryptococcal Working Group I (Genotyping of Cryptococcus neoformans and... 
Cryptococcus gattii | Multi Locus Sequence Typing | Cryptococcus neoformans | Genotyping | Multi locus sequence typing | SPECIES COMPLEX | INFECTIOUS DISEASES | RFLP ANALYSIS | VAR. GRUBII | MATING TYPES | IDENTIFICATION | SEROTYPE-A | GENE | RANDOM AMPLIFICATION | POLYMORPHIC DNA | VETERINARY SCIENCES | MYCOLOGY | PATHOGENIC YEAST | Consensus Sequence | DNA, Fungal - analysis | Base Sequence | Cryptococcus neoformans - genetics | Molecular Sequence Data | Genes, Fungal | Genotype | Mycological Typing Techniques - methods | Cryptococcus gattii - genetics | Genetic Loci | Sequence Analysis, DNA - methods
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4. Full Text Multidrug-Resistant Candida auris Misidentified as Candida haemulonii: Characterization by Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry and DNA Sequencing and Its Antifungal Susceptibility Profile Variability by Vitek 2, CLSI Broth Microdilution, and Etest Method
by Kathuria, S and Singh, P.K and Sharma, C and Prakash, A and Masih, A and Kumar, A and Meis, J.F.G.M and Chowdhary, A
Journal of Clinical Microbiology, ISSN 0095-1137, 2015, Volume 53, Issue 6, pp. 1823 - 1830
Candida auris is a multidrug-resistant yeast that causes a wide spectrum of infections, especially in intensive care settings. We investigated C. auris... 
CASPOFUNGIN | NOV | CLONAL STRAIN | MICROBIOLOGY | AMPHOTERICIN-B | IDENTIFICATION | KOREA | INDIA | Antifungal Agents - pharmacology | Candida - genetics | DNA, Fungal - analysis | DNA, Fungal - genetics | Humans | Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization - methods | Candidiasis - microbiology | Sequence Analysis, DNA | Candidiasis - diagnosis | Drug Resistance, Multiple, Bacterial | Mycological Typing Techniques - methods | Candida - drug effects | Microbial Sensitivity Tests - methods | Mycology
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5. Full Text Can multidrug-resistant candida auris be reliably identified in clinical microbiology laboratories?
by Mizusawa, Masako and Miller, Heather and Green, Rachel and Lee, Richard and Durante, Mariann and Perkins, Rosalie and Hewitt, Caroline and Simner, Patricia J and Carroll, Karen C and Hayden, Randall T and Zhang, Sean X
Journal of Clinical Microbiology, ISSN 0095-1137, 02/2017, Volume 55, Issue 2, pp. 638 - 640
Candida auris | MALDI-TOF MS | MicroScan | BD Phoenix | API | Vitek | Vitek MS | Candida duobushaemulonii | Candida haemulonii | Bruker MS | MICROBIOLOGY | Microbiological Techniques - methods | Candida - classification | Drug Resistance, Multiple, Fungal | Humans | Mycological Typing Techniques - methods | Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization - methods | Candida - drug effects | Candidiasis - microbiology | Candida - isolation & purification | Candidiasis - diagnosis | Letter to the Editor
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6. Full Text Development of a Multilocus Sequence Typing Tool for High-Resolution Genotyping of Enterocytozoon bieneusi
by Yaoyu Feng and Na Li and Theresa Dearen and Maria L. Lobo and Olga Matos and Vitaliano Cama and Lihua Xiao
Applied and Environmental Microbiology, ISSN 0099-2240, 07/2011, Volume 77, Issue 14, pp. 4822 - 4828
Classifications Services AEM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit... 
MOLECULAR CHARACTERIZATION | MICROSPORIDIOSIS | LIMA | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | GENES | MICROBIOLOGY | MAMMALS | DNA, Fungal - genetics | Humans | Molecular Sequence Data | Genotype | Enterocytozoon - genetics | Phylogeny | Sequence Homology, Nucleic Acid | Microsatellite Repeats - genetics | Multilocus Sequence Typing - methods | Animals | Base Sequence | Polymerase Chain Reaction | Minisatellite Repeats - genetics | Mycological Typing Techniques - methods | Enterocytozoon - classification | Sequence Analysis, DNA - methods | Host-bacteria relationships | Usage | Diarrhea | Causes of | Research | Nucleotide sequencing | Microsporidia | Health aspects | Public Health Microbiology
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7. Full Text Multilocus Sequence Typing of Pneumocystis jirovecii from Clinical Samples: How Many and Which Loci Should Be Used?
by Céline Maitte and Marion Leterrier and Patrice Le Pape and Michel Miegeville and Florent Morio
Journal of Clinical Microbiology, ISSN 0095-1137, 09/2013, Volume 51, Issue 9, pp. 2843 - 2849
Article Usage Stats Services JCM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley... 
MOLECULAR EVIDENCE | CARINII-PNEUMONIA | KIDNEY-TRANSPLANT RECIPIENTS | DIHYDROFOLATE-REDUCTASE GENE | RIBOSOMAL-RNA OPERON | POSITIVE PATIENTS | NEGATIVE PATIENTS | MICROBIOLOGY | RENAL-TRANSPLANTATION | DIHYDROPTEROATE SYNTHASE | AIDS PATIENTS | Pneumocystis carinii - classification | Humans | Pneumocystis Infections - microbiology | Mycological Typing Techniques - methods | Genetic Loci | Immunocompromised Host | Molecular Epidemiology - methods | Pneumocystis carinii - isolation & purification | Multilocus Sequence Typing - methods | Pneumocystis Infections - epidemiology | Pneumocystis carinii - genetics | Mycology
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8. Full Text A new Aspergillus fumigatus typing method based on hypervariable tandem repeats located within exons of surface protein coding genes (TRESP)
by Garcia-Rubio, Rocio and Gil, Horacio and Monteiro, Maria Candida and Pelaez, Teresa and Mellado, Emilia
PLoS ONE, ISSN 1932-6203, 10/2016, Volume 11, Issue 10, p. e0163869
Aspergillus fumigatus is a saprotrophic mold fungus ubiquitously found in the environment and is the most common species causing invasive aspergillosis in... 
ASSAY | RANDOM AMPLIFICATION | MULTIDISCIPLINARY SCIENCES | RESISTANCE | MOLECULAR EPIDEMIOLOGY | OUTBREAK | FRAGMENT-LENGTH-POLYMORPHISM | UTILITY | Aspergillus fumigatus - classification | Exons | Membrane Proteins - genetics | Humans | Fungal Proteins - genetics | Aspergillus fumigatus - genetics | Azoles - pharmacology | Aspergillus fumigatus - isolation & purification | Aspergillosis - microbiology | Mycological Typing Techniques - methods | Genotyping Techniques - methods | Drug Resistance, Fungal | Microsatellite Repeats | Mycoses | Discrimination | Molds (Fungi) | Genes | Methods | Municipalities | Yeast | Laboratories | Outbreaks | Genomes | Epidemiology | Cell surface | Gene sequencing | Fungi | Proteins | Coding | Yard waste | Strains (organisms) | Surface protein A | Genotypes | Deoxyribonucleic acid--DNA | Antigens | Protein A | Invasive species | Infectious diseases | Hospitals | Genotyping | Aspergillosis | Deoxyribonucleic acid | DNA
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9. Full Text Evaluation of polymorphic locus sequence typing for candida glabrata epidemiology
by Katiyar, Santosh and Shiffrin, Eric and Shelton, Celeste and Healey, Kelley and Vermitsky, John-Paul and Edlind, Tom
Journal of Clinical Microbiology, ISSN 0095-1137, 04/2016, Volume 54, Issue 4, pp. 1042 - 1050
The opportunistic yeast Candida glabrata is increasingly refractory to antifungal treatment or prophylaxis and relatedly is increasingly implicated in health... 
ASPERGILLUS-FUMIGATUS | TANDEM-REPEAT ANALYSIS | AZOLE RESISTANCE | MOLECULAR EPIDEMIOLOGY | MICROBIOLOGY | ALBICANS | BLOOD-STREAM INFECTIONS | FIELD GEL-ELECTROPHORESIS | NOSOCOMIAL INFECTIONS | CARE-ASSOCIATED CANDIDEMIA | REVEALS | Humans | Candidiasis - epidemiology | Genotype | Genetic Loci | Candidiasis - microbiology | Molecular Epidemiology - methods | Multilocus Sequence Typing - methods | Genetic Variation | Candida glabrata - classification | Candida glabrata - isolation & purification | Mycological Typing Techniques - methods | Candida glabrata - genetics | Cluster Analysis | Epidemiology
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10. Full Text Detection of microorganisms in blood specimens using matrix-assisted laser desorption ionization time-of-flight mass spectrometry: a review
by Drancourt, M
Clinical Microbiology and Infection, ISSN 1198-743X, 11/2010, Volume 16, Issue 11, pp. 1620 - 1625
Matrix-assisted laser desorption ionization time-of-flight (MALDI-TOF) mass spectrometry (MS) initiated a revolution in the identification of organisms grown... 
Bacteraemia | septicaemia | identification | MALDI-TOF | Candida | review | MALDI‐TOF | Identification | Review | Septicaemia | INFECTIOUS DISEASES | BACTERIA | CULTURE BOTTLES | PSEUDOMONAS-AERUGINOSA | MICROBIOLOGY | RAPID IDENTIFICATION | Fungi - classification | Humans | Fungi - isolation & purification | Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization - methods | Bacteremia - diagnosis | Blood - microbiology | Fungemia - microbiology | Bacterial Typing Techniques - methods | Fungemia - diagnosis | Bacteremia - microbiology | Bacteria - isolation & purification | Mycological Typing Techniques - instrumentation | Bacteria - classification | Bacteriological Techniques | Mycological Typing Techniques - methods | Bacterial Typing Techniques - instrumentation | Mass spectrometry | Pneumonia | Bacterial pneumonia | Ions | Desorption | Lasers | Blood | Streptococcus infections | Fungi | Automation | Microorganisms | Antibiotic resistance | Data processing | Mass spectroscopy | Communication
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11. Full Text Quantitative polymerase chain reaction detection of circulating DNA in serum for early diagnosis of mucormycosis in immunocompromised patients
by Millon, Laurence and Larosa, Fabrice and Lepiller, Quentin and Legrand, Faezeh and Rocchi, Steffi and Daguindau, Etienne and Scherer, Emeline and Bellanger, Anne-Pauline and Leroy, Joel and Grenouillet, Frederic
Clinical Infectious Diseases, ISSN 1058-4838, 05/2013, Volume 56, Issue 10, pp. e95 - e101
Background. The aim of our study was to assess the detection of circulating DNA from the most common species of Mucorales for early diagnosis of mucormycosis... 
circulating DNA | biomarker | quantitative PCR | mucormycosis | PULMONARY | INFECTIOUS DISEASES | ZYGOMYCOSIS | TISSUE | MICROBIOLOGY | IMMUNOLOGY | IDENTIFICATION | FRANCE | INVASIVE ASPERGILLOSIS | DISEASE | MOLD INFECTIONS | EPIDEMIOLOGY | Mucormycosis - blood | Limit of Detection | Mucorales - isolation & purification | Reproducibility of Results | Humans | Middle Aged | Male | Mucorales - genetics | Polymerase Chain Reaction - methods | Mucormycosis - immunology | Mucormycosis - microbiology | Adolescent | Adult | Female | Mycological Typing Techniques - methods | Aged | Retrospective Studies | Immunocompromised Host | DNA, Fungal - blood | Polymerase chain reaction | Mucormycosis | Usage | Immunocompromised host | Causes of | Genetic aspects | Diagnosis | Drug therapy | Health aspects | Mycology | DNA, Fungal | Life Sciences | Microbiology and Parasitology | Mucorales | Polymerase Chain Reaction | Mycological Typing Techniques
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12. Full Text Identification and typing of the Candida parapsilosis complex: MALDI-TOF MS vs. AFLP
by Carolis, Elena De and Hensgens, Lambert A. M and Vella, Antonietta and Posteraro, Brunella and Sanguinetti, Maurizio and Senesi, Sonia and Tavanti, Arianna
Medical Mycology, ISSN 1369-3786, 02/2014, Volume 52, Issue 2, pp. 123 - 130
In this study we compare the capability of amplification fragment-length polymorphism (AFLP) and matrix-assisted laser desorption/ionization time-of-flight... 
typing | MALDI-TOF MS | Candida metapsilosis | AFLP | Candida orthopsilosis | Candida parapsilosis | Typing | LODDEROMYCES-ELONGISPORUS | STRAINS | INFECTIOUS DISEASES | ORTHOPSILOSIS | METAPSILOSIS | SPP | VETERINARY SCIENCES | MYCOLOGY | Candida - genetics | Humans | Genotype | Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization - methods | Phylogeny | Candida - isolation & purification | Amplified Fragment Length Polymorphism Analysis - methods | Candida - classification | Phenotype | Candida - chemistry | Molecular Typing - methods | Mycological Typing Techniques - methods | Cluster Analysis
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13. Full Text Design and validation of a multiplex PCR protocol for microsatellite typing of Candida parapsilosis sensu stricto isolates
by Trobajo-Sanmartín, Camino and Ezpeleta, Guillermo and Pais, Célia and Eraso, Elena and Quindós, Guillermo
BMC Genomics, ISSN 1471-2164, 09/2018, Volume 19, Issue 1, pp. 718 - 10
Background: Analysis of polymorphic microsatellite markers (STR) is a helpful genotyping technique to differentiate Candida parapsilosis sensu stricto... 
Multiplex PCR | Specificity | Reproducibility of results | Genotyping technique | Microsatellites repeats | Candida parapsilosis sensu stricto | STRAINS | MARKERS | AMPLIFICATION | INTENSIVE-CARE-UNIT | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | GENETICS & HEREDITY | DIVERSITY | Candidiasis, Invasive - diagnosis | Multiplex Polymerase Chain Reaction - methods | DNA, Fungal - analysis | Candida parapsilosis - classification | Humans | Sensitivity and Specificity | Mycological Typing Techniques - methods | Candida parapsilosis - isolation & purification | Genotyping Techniques | Candida parapsilosis - genetics | Microsatellite Repeats | Candida albicans | Genotype | Usage | Genetic aspects | Research | Biometry | Performance evaluation | Multiplexing | Parameter estimation | Intensive care | Microsatellites | Therapeutic applications | Standardization | Multiculturalism & pluralism | Contamination | Genetic markers | Genotyping | Scientific imaging | Genetic engineering | Diagnostic systems | Mass spectrometry | Deoxyribonucleic acid--DNA | Methods | Polymorphism | Signal to noise ratio
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14. Full Text Assessment of the microbial diversity of Brazilian kefir grains by PCR-DGGE and pyrosequencing analysis
by Leite, A.M.O and Mayo, B and Rachid, C.T.C.C and Peixoto, R.S and Silva, J.T and Paschoalin, V.M.F and Delgado, S
Food Microbiology, ISSN 0740-0020, 09/2012, Volume 31, Issue 2, pp. 215 - 221
The microbial diversity and community structure of three different kefir grains from different parts of Brazil were examined via the combination of two... 
PCR-DGGE | Culture-independent microbiology | Kefir grains | Pyrosequencing | Lactobacillus | FOOD SCIENCE & TECHNOLOGY | MICROBIOLOGY | COMMUNITIES | IDENTIFICATION | GRADIENT GEL-ELECTROPHORESIS | CULTURE-INDEPENDENT METHODS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | LACTIC-ACID BACTERIA | CHEMICAL-COMPOSITION | YEASTS | FERMENTATION | TAIWANESE KEFIR | 16S RIBOSOMAL-RNA | Yeasts - classification | Bacteria - metabolism | Cultured Milk Products - microbiology | Molecular Sequence Data | Phylogeny | Biodiversity | Bacteria - genetics | Bacterial Typing Techniques - methods | Polymerase Chain Reaction - methods | Denaturing Gradient Gel Electrophoresis - methods | Yeasts - genetics | Bacteria - isolation & purification | Bacteria - classification | Brazil | Mycological Typing Techniques - methods | Yeasts - isolation & purification | Sequence Analysis, DNA - methods | Yeasts - metabolism | Bacteria | Acetic acid | Analysis | Organic acids | Microorganisms | Grains | Communities | Electrophoresis | Leuconostoc | Assessments
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