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Methods in Molecular Biology, ISSN 1064-3745, 2016, Volume 1418, pp. 335 - 351
The Gviz package offers a flexible framework to visualize genomic data in the context of a variety of different genome annotation features. Being tightly... 
Visualization | NGS | Genomics | Annotation | Computational Biology - methods | Databases, Genetic | High-Throughput Nucleotide Sequencing | Molecular Sequence Annotation - methods | Software | Internet | Genomics - methods | Index Medicus
Journal Article
Current Protocols in Bioinformatics, ISSN 1934-3396, 2013, Volume 43, Issue 43, p. 11.10.1
This unit describes how to use BWA and the Genome Analysis Toolkit (GATK) to map genome sequencing data to a reference and produce high-quality variant calls... 
Exome | WGS | NGS | Genotyping | Variant detection | Genetic Variation | Haploidy | Haplotypes - genetics | Sequence Alignment | Humans | Molecular Sequence Annotation | Databases, Genetic | Polymorphism, Single Nucleotide - genetics | Software | Calibration | Genome, Human
Journal Article
Methods in Molecular Biology, ISSN 1064-3745, 2018, Volume 1802, pp. 225 - 233
HLA allele information is essential for a variety of medical applications, such as genomic studies of multifactorial diseases, including immune system and... 
Database | Software | NGS | Bioinformatics | HLA typing | Algorithms | Humans | Alleles | Databases, Genetic | High-Throughput Nucleotide Sequencing - methods | Histocompatibility Testing - methods | Whole Exome Sequencing | Index Medicus
Journal Article
Journal of Thoracic Oncology, ISSN 1556-0864, 07/2019, Volume 14, Issue 7, pp. 1233 - 1243
Introduction: At the prior data cutoff (February 9, 2017) the ALEX trial showed superior investigator-assessed progression-free survival (PFS) for alectinib... 
ALEX | EML4-ALK | Alectinib | Non–small cell lung cancer | NGS | ONCOLOGY | RESPIRATORY SYSTEM | Non-small cell lung cancer | CRIZOTINIB
Journal Article
Methods, ISSN 1046-2023, 09/2013, Volume 63, Issue 1, pp. 41 - 49
New sequencing technologies pose significant challenges in terms of data complexity and magnitude. It is essential that efficient software is developed with... 
Algorithms | Next-generation sequencing | Pipelines | Tools | NGS | RNAseq | Sequencing | Adapter trimming | BIOCHEMISTRY & MOLECULAR BIOLOGY | BIOCHEMICAL RESEARCH METHODS | Sequence Analysis, RNA - methods | High-Throughput Screening Assays | Humans | Software | Automatic Data Processing | Quality Control | RNA | Quality control | Index Medicus
Journal Article
Methods in Ecology and Evolution, ISSN 2041-210X, 10/2014, Volume 5, Issue 10, pp. 1086 - 1094
Coalescent‐based species delimitation methods combine population genetic and phylogenetic theory to provide an objective means for delineating evolutionarily... 
GMYC | OTU | species delimitation | metabarcoding | DNA | barcoding | molecular dating | NGS | PTP | coalescent | speciation | Metabarcoding | DNA barcoding | Coalescent | Molecular dating | Species delimitation | Speciation | MAXIMUM-LIKELIHOOD | PERFORMANCE | DNA BARCODES | DIVERGENCE TIMES | INFERENCE | TAXONOMY | TREES | EVOLUTION | YULE-COALESCENT MODEL | ECOLOGY | DIVERSITY | Trees | Phylogenetics | Evolution | Methods | Species and Traits
Journal Article
植物分类学报:英文版, ISSN 1674-4918, 2015, Volume 53, Issue 5, pp. 371 - 379
Journal Article