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1. Full Text Short intronic repeat sequences facilitate circular RNA production
by Liang, Dongming and Wilusz, Jeremy E
Genes & development, ISSN 0890-9369, 10/2014, Volume 28, Issue 20, pp. 2233 - 2247
Noncoding RNA | circRNA | Splicing | Alu | EPHB4 | HIPK3 | ZKSCAN1 | Genetics & Heredity | Life Sciences & Biomedicine | Developmental Biology | Science & Technology | Cell Biology | RNA Splice Sites - genetics | Humans | Protein-Serine-Threonine Kinases - genetics | Molecular Sequence Data | Transcription Factors - genetics | Microsatellite Repeats - genetics | RNA - genetics | RNA - biosynthesis | Base Pairing | Base Sequence | Plasmids - genetics | Mutation | Inteins - genetics | Intracellular Signaling Peptides and Proteins - genetics | Thermodynamics | Usage | RNA | Analysis | Gene expression | Spliceosomes | Health aspects | Index Medicus | noncoding RNA | Research Paper | splicing
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2. Full Text Functional annotation of noncoding sequence variants
by Ritchie, Graham R. S and Dunham, Ian and Zeggini, Eleftheria and Flicek, Paul
Nature methods, ISSN 1548-7091, 2014, Volume 11, Issue 3, pp. 294 - 296
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biochemical Research Methods | Science & Technology | Genetic Variation | Algorithms | Untranslated Regions - genetics | Computer Simulation | Humans | Molecular Sequence Annotation | Noncoding DNA | Physiological aspects | Genomes | Research | Genetics | Genomics | Index Medicus
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3. Full Text Predicting effects of noncoding variants with deep learning-based sequence model
by Zhou, Jian and Troyanskaya, Olga G
Nature methods, ISSN 1548-7091, 09/2015, Volume 12, Issue 10, pp. 931 - 934
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biochemical Research Methods | Science & Technology | Epigenomics | Humans | RNA, Untranslated | Regulatory Sequences, Nucleic Acid | Hepatocyte Nuclear Factor 3-alpha - genetics | Support Vector Machine | Transcription Factors - genetics | Transcription Factors - metabolism | Algorithms | Models, Genetic | Polymorphism, Single Nucleotide | Mutation | Genome, Human | Quantitative Trait Loci | Chromatin - genetics | Noncoding DNA | Innovations | Nucleotide sequencing | Properties | Gene expression | Observations | DNA sequencing | Chromatin | Genetic diversity | Gene loci | Genetic algorithms | Index Medicus
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4. Full Text LNCipedia: a database for annotated human lncRNA transcript sequences and structures
by Volders, Pieter-Jan and Helsens, Kenny and Wang, Xiaowei and Menten, Bjorn and Martens, Lennart and Gevaert, Kris and Vandesompele, Jo and Mestdagh, Pieter
Nucleic acids research, ISSN 0305-1048, 01/2013, Volume 41, Issue D1, pp. D246 - D251
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Proteins - genetics | RNA, Long Noncoding - chemistry | Humans | Molecular Sequence Annotation | Transcriptome | RNA, Long Noncoding - genetics | Software | Internet | Databases, Nucleic Acid | RNA, Long Noncoding - metabolism | Index Medicus
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5. Full Text An update on LNCipedia: A database for annotated human lncRNA sequences
by Volders, Pieter-Jan and Verheggen, Kenneth and Menschaert, Gerben and Vandepoele, Klaas and Martens, Lennart and Vandesompele, Jo and Mestdagh, Pieter
Nucleic acids research, ISSN 0305-1048, 01/2015, Volume 43, Issue 1, pp. D174 - D180
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Proteins - genetics | Animals | Sequence Analysis, RNA | RNA, Long Noncoding - chemistry | Humans | Molecular Sequence Annotation | HEK293 Cells | Mice | RNA, Long Noncoding - genetics | Internet | Databases, Nucleic Acid | Zebrafish - genetics | Index Medicus | Database Issue
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6. Full Text Sequences enriched in Alu repeats drive nuclear localization of long RNAs in human cells
by Lubelsky, Yoav and Ulitsky, Igor
Nature (London), ISSN 0028-0836, 03/2018, Volume 555, Issue 7694, pp. 107 - 111
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | RNA Transport | Species Specificity | Humans | RNA, Messenger - genetics | RNA, Long Noncoding - genetics | RNA, Messenger - metabolism | Heterogeneous-Nuclear Ribonucleoprotein K - metabolism | Animals | Cell Nucleus - genetics | MCF-7 Cells | Base Sequence | Conserved Sequence | Mice | Active Transport, Cell Nucleus | HeLa Cells | Alu Elements - genetics | Binding Sites | RNA, Long Noncoding - metabolism | Untranslated Regions - genetics | Evolution, Molecular | RNA sequencing | Physiological aspects | RNA | Observations | Cells | Enrichment | Proteins | Cloning | Proteomics | Alu elements | Genomes | Gene expression | Localization | Ribonucleic acid--RNA | Bioinformatics | Accumulation | Exports | Index Medicus
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7. Full Text Evolutionary conservation of long non-coding RNAs; sequence, structure, function
by Johnsson, Per and Lipovich, Leonard and Grandér, Dan and Morris, Kevin V
Biochimica et biophysica acta. General subjects, ISSN 0304-4165, 03/2014, Volume 1840, Issue 3, pp. 1063 - 1071
Polypurines | Antisense RNA | Evolution | Epigenetic | Secondary structure | Long non-coding RNA | Biochemistry & Molecular Biology | Biophysics | Life Sciences & Biomedicine | Science & Technology | Animals | RNA, Long Noncoding - chemistry | Humans | RNA, Antisense - chemistry | Conserved Sequence | RNA, Long Noncoding - genetics | RNA, Long Noncoding - physiology | RNA, Antisense - physiology | Evolution, Molecular | RNA | Genetic research
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8. Full Text Long Noncoding RNA Functionality Beyond Sequence: The Jpx Model: Commentary on “Functional Conservation of lncRNA JPX Despite Sequence and Structural Divergence” by Karner et al. (2019)
by Oh, Hyun Jung and Lee, Jeannie T
Journal of molecular biology, ISSN 0022-2836, 01/2020, Volume 432, Issue 2, pp. 301 - 304
Jpx | Long noncoding RNA | LncRNA evolution | X-chromosome inactivation | Index Medicus
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9. Full Text Reference sequence (RefSeq) database at NCBI: Current status, taxonomic expansion, and functional annotation
by O'Leary, Nuala A and Wright, Mathew W and Brister, J. Rodney and Ciufo, Stacy and Haddad, Diana and McVeigh, Rich and Rajput, Bhanu and Robbertse, Barbara and Smith-White, Brian and Ako-Adjei, Danso and Astashyn, Alexander and Badretdin, Azat and Bao, Yiming and Blinkova, Olga and Brover, Vyacheslav and Chetvernin, Vyacheslav and Choi, Jinna and Cox, Eric and Ermolaeva, Olga and Farrell, Catherine M and Goldfarb, Tamara and Gupta, Tripti and Haft, Daniel and Hatcher, Eneida and Hlavina, Wratko and Joardar, Vinita S and Kodali, Vamsi K and Li, Wenjun and Maglott, Donna and Masterson, Patrick and McGarvey, Kelly M and Murphy, Michael R and O'Neill, Kathleen and Pujar, Shashikant and Rangwala, Sanjida H and Rausch, Daniel and Riddick, Lillian D and Schoch, Conrad and Shkeda, Andrei and Storz, Susan S and Sun, Hanzhen and Thibaud-Nissen, Francoise and Tolstoy, Igor and Tully, Raymond E and Vatsan, Anjana R and Wallin, Craig and Webb, David and Wu, Wendy and Landrum, Melissa J and Kimchi, Avi and Tatusova, Tatiana and DiCuccio, Michael and Kitts, Paul and Murphy, Terence D and Pruitt, Kim D
Nucleic acids research, ISSN 0305-1048, 2016, Volume 44, Issue 1, pp. D733 - D745
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Genome, Viral | Vertebrates - genetics | Humans | Molecular Sequence Annotation | Genomics - standards | Databases, Genetic | Invertebrates - genetics | Rats | Gene Expression Profiling | RNA, Long Noncoding - genetics | Genome, Plant | Phylogeny | Genome, Microbial | Nematoda - genetics | Sequence Analysis, Protein | Reference Standards | Animals | Sequence Analysis, RNA | Genome, Fungal | Cattle | Mice | Genome, Human | Index Medicus | Database Issue
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10. Full Text An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions
by Haudry, Annabelle and Platts, Adrian E and Vello, Emilio and Hoen, Douglas R and Leclercq, Mickael and Williamson, Robert J and Forczek, Ewa and Joly-Lopez, Zoé and Steffen, Joshua G and Hazzouri, Khaled M and Dewar, Ken and Stinchcombe, John R and Schoen, Daniel J and Wang, Xiaowu and Schmutz, Jeremy and Town, Christopher D and Edger, Patrick P and Pires, J Chris and Schumaker, Karen S and Jarvis, David E and Mandáková, Terezie and Lysak, Martin A and Van Den Bergh, Erik and Schranz, M Eric and Harrison, Paul M and Moses, Alan M and Bureau, Thomas E and Wright, Stephen I and Blanchette, Mathieu and Joint Genome Institute (JGI)
Nature genetics, ISSN 1061-4036, 08/2013, Volume 45, Issue 8, pp. 891 - 898
Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Gene Duplication | Genomics | Molecular Sequence Annotation | Regulatory Sequences, Nucleic Acid | Computational Biology | Selection, Genetic | Genome, Plant | Phylogeny | Arabidopsis - genetics | Brassicaceae - genetics | Nucleotide Motifs | Brassicaceae - classification | Gene Deletion | Gene Expression Regulation, Plant | Conserved Sequence | High-Throughput Nucleotide Sequencing | Cluster Analysis | Evolution, Molecular | Noncoding DNA | Physiological aspects | Molecular evolution | Genetic aspects | Research | Cruciferae | Proteins | Phylogenetics | Evolution | Genomes | Deoxyribonucleic acid--DNA | Index Medicus | Life Sciences | Populations and Evolution | Genetics | Biodiversity | Systematics, Phylogenetics and taxonomy | Quantitative Methods
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