Articles

Search Articles

Advanced search
Help

Catalogue

Articles

Databases

X
Search Filters
Format Format
Format Format
X
Sort by Item Count (A-Z)
Filter by Count
Journal Article (380) 380
Publication (31) 31
Book Chapter (11) 11
Conference Proceeding (8) 8
Book Review (3) 3
Book / eBook (1) 1
Dissertation (1) 1
more...
Subjects Subjects
Subjects Subjects
X
Sort by Item Count (A-Z)
Filter by Count
index medicus (212) 212
dna sequencing (148) 148
nanopores (136) 136
nanopore (119) 119
nucleotide sequencing (109) 109
dna (95) 95
genomes (90) 90
deoxyribonucleic acid--dna (87) 87
nanopore sequencing (83) 83
humans (80) 80
genomics (78) 78
sequence analysis, dna - methods (78) 78
porosity (61) 61
identification (59) 59
minion (58) 58
multidisciplinary sciences (55) 55
gene sequencing (53) 53
biotechnology & applied microbiology (50) 50
genome (49) 49
research (48) 48
analysis (45) 45
high-throughput nucleotide sequencing - methods (42) 42
article (41) 41
genetics & heredity (40) 40
methods (38) 38
biochemical research methods (35) 35
sequence analysis, dna - instrumentation (33) 33
translocation (33) 33
genetics (31) 31
microbiology (31) 31
nanoscience & nanotechnology (31) 31
usage (31) 31
algorithms (30) 30
bioinformatics (30) 30
materials science, multidisciplinary (30) 30
sequencing (30) 30
proteins (29) 29
nucleotide sequence (28) 28
real-time (28) 28
software (28) 28
nanostructure (27) 27
biology (26) 26
dna - chemistry (26) 26
medicine (26) 26
molecules (26) 26
biochemistry & molecular biology (25) 25
dna - genetics (25) 25
genetic aspects (24) 24
nanoporosität (24) 24
graphene (23) 23
nanotechnology (23) 23
nucleotides (23) 23
solid-state nanopores (23) 23
transport (23) 23
animals (22) 22
genetic research (22) 22
high-throughput nucleotide sequencing (22) 22
sensors (21) 21
alpha-hemolysin (20) 20
chemistry, analytical (20) 20
chemistry, multidisciplinary (20) 20
genes (20) 20
mutation (20) 20
bacterial (19) 19
biotechnology (19) 19
long-read sequencing (19) 19
science (19) 19
alignment (18) 18
dna methylation (18) 18
laboratories (18) 18
sequence analysis, dna (18) 18
deoxyribonucleic acid (17) 17
next-generation sequencing (17) 17
physics, applied (17) 17
rna (17) 17
single-molecule (17) 17
discrimination (16) 16
human genome (16) 16
pathogens (16) 16
reproducibility of results (16) 16
bacteria (15) 15
cancer (15) 15
nanopore sequencer (15) 15
genomics - methods (14) 14
nanotechnology - methods (14) 14
next generation sequencing (14) 14
protein (14) 14
dna - analysis (13) 13
high-throughput nucleotide sequencing - instrumentation (13) 13
polymerase chain reaction (13) 13
research article (13) 13
transcriptome (13) 13
amplification (12) 12
assembly (12) 12
chemistry, physical (12) 12
evolution (12) 12
health aspects (12) 12
methodology (12) 12
molecular biology (12) 12
physics, condensed matter (12) 12
more...
Library Location Library Location
Language Language
Publication Date Publication Date
Click on a bar to filter by decade
Slide to change publication date range


1. Full Text Improved data analysis for the MinION nanopore sequencer
by Jain, Miten and Fiddes, Ian T and Miga, Karen H and Olsen, Hugh E and Paten, Benedict and Akeson, Mark
Nature Methods, ISSN 1548-7091, 03/2015, Volume 12, Issue 4, pp. 351 - 356
Speed, single-base sensitivity and long read lengths make nanopores a promising technology for high-throughput sequencing. We evaluated and optimized the... 
BASIC LOCAL ALIGNMENT | DNA | GENOME | BIOCHEMICAL RESEARCH METHODS | MULTIPLE ALIGNMENT | Gene Dosage | Algorithms | Neoplasms - genetics | High-Throughput Nucleotide Sequencing - methods | Nanopores | Humans | Chromosome mapping | Nucleotide sequencing | Nanotechnology | Methods | Innovations | DNA sequencing | Nanoscience | Data analysis | Genes | Deoxyribonucleic acid--DNA
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
2. Full Text A first look at the Oxford Nanopore MinION sequencer
by Mikheyev, Alexander S and Tin, Mandy M. Y
Molecular Ecology Resources, ISSN 1755-098X, 11/2014, Volume 14, Issue 6, pp. 1097 - 1102
Oxford Nanopore's third‐generation single‐molecule sequencing platform promises to decrease costs for reagents and instrumentation. After a 2‐year hiatus... 
nanopore sequencing | genomics | next‐generation sequencing | bioinformatics | Next-generation sequencing | Nanopore sequencing | Bioinformatics | Genomics | next-generation sequencing | BIOCHEMISTRY & MOLECULAR BIOLOGY | PLATFORMS | BASIC LOCAL ALIGNMENT | DISCOVERY | EVOLUTIONARY BIOLOGY | HUMAN GENOME | DNA | FRAMEWORK | ECOLOGY | PACIFIC BIOSCIENCES | DNA, Viral - chemistry | Sequence Analysis, DNA - instrumentation | Animals | Exocrine Glands - chemistry | Transcriptome | Bacteriophage lambda - genetics | High-Throughput Nucleotide Sequencing - instrumentation | DNA, Viral - genetics | High-Throughput Nucleotide Sequencing - methods | Sequence Analysis, DNA - methods | Snakes | Nucleotide sequencing | DNA sequencing
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
3. Full Text A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer
by Quick, Joshua and Quinlan, Aaron R and Loman, Nicholas J
GigaScience, ISSN 2047-217X, 10/2014, Volume 3, Issue 1, p. 22
Background: The MinION (TM) is a new, portable single-molecule sequencer developed by Oxford Nanopore Technologies. It measures four inches in length and is... 
Nanopore sequencing | Genomics | DNA | MULTIDISCIPLINARY SCIENCES
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
4. Full Text Rapid preimplantation genetic screening using a handheld, nanopore-based DNA sequencer
by Wei, Shan and Weiss, Zachary R and Gaur, Pallavi and Forman, Eric and Williams, Zev
Fertility and Sterility, ISSN 0015-0282, 10/2018, Volume 110, Issue 5, pp. 910 - 916.e2
Objective: To determine if a handheld, nanopore-based DNA sequencer can be used for rapid preimplantation genetic screening (PGS). Design: Laboratory study.... 
handheld nanopore sequencer | Rapid preimplantation genetic screening | aneuploidy screening | onsite assay | VALIDATION | HUMAN BLASTOCYSTS | OBSTETRICS & GYNECOLOGY | ANEUPLOIDY | REPRODUCTIVE BIOLOGY | IN-VITRO FERTILIZATION | TECHNOLOGY | EMBRYOS | PRENATAL-DIAGNOSIS | Usage | Genomic libraries | Analysis | DNA | Nucleotide sequencing | Genetic screening | DNA sequencing
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
5. Full Text A novel diagnostic method for malaria using loop-mediated isothermal amplification (LAMP) and MinION™ nanopore sequencer
by Imai, Kazuo and Tarumoto, Norihito and Misawa, Kazuhisa and Runtuwene, Lucky Ronald and Sakai, Jun and Hayashida, Kyoko and Eshita, Yuki and Maeda, Ryuichiro and Tuda, Josef and Murakami, Takashi and Maesaki, Shigefumi and Suzuki, Yutaka and Yamagishi, Junya and Maeda, Takuya
BMC Infectious Diseases, ISSN 1471-2334, 09/2017, Volume 17, Issue 1, pp. 621 - 9
Background: A simple and accurate molecular diagnostic method for malaria is urgently needed due to the limitations of conventional microscopic examination. In... 
Malaria | Plasmodium ovale wallikeri | Plasmodium ovale curtisi | MinION | Diagnosis | LAMP | Nanopore sequencer | PARASITES | INFECTIOUS DISEASES | INFECTIONS | ACCURATE | ASSAY | PERFORMANCE | SENSITIVE DETECTION | MICROSCOPY | IDENTIFICATION | MinION (TM) | POLYMERASE-CHAIN-REACTION | REAL-TIME | Limit of Detection | Molecular Diagnostic Techniques - methods | Nucleic Acid Amplification Techniques - methods | Humans | Molecular Diagnostic Techniques - instrumentation | Plasmodium - genetics | Malaria - diagnosis | Malaria, Vivax - diagnosis | DNA Primers | Nanopores | Malaria, Falciparum - diagnosis | Polymerase Chain Reaction | Nucleic Acid Amplification Techniques - instrumentation | RNA, Ribosomal, 18S | Indonesia | Plasmodium falciparum | Care and treatment | Research | Nucleotide sequencing | DNA sequencing | Vector-borne diseases | Analytical methods | Parasites | Polymerase chain reaction | Amplification | Microscopy | Plasmids | Primers | Diagnostic systems | Mutation | Porosity | Detection limits | rRNA 18S | Species | Methods
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
6. Full Text Species-level resolution of 16S rRNA gene amplicons sequenced through the MinION™ portable nanopore sequencer
by Benítez-Páez, Alfonso and Portune, Kevin J and Sanz, Yolanda
GigaScience, ISSN 2047-217X, 2016, Volume 5, Issue 1, p. 4
Background: The miniaturised and portable DNA sequencer MinION (TM) has been released to the scientific community within the framework of an early access... 
Long-read sequencing | Microbial diversity | MinION | Nanopore sequencer | 16S rDNA amplicon sequencing | DATABASE | MULTIDISCIPLINARY SCIENCES | BACTERIAL | Reproducibility of Results | Nucleic Acid Amplification Techniques - methods | Species Specificity | DNA, Bacterial - chemistry | Nanopores | Bacteria - genetics | Bacterial Typing Techniques - methods | DNA, Ribosomal - chemistry | DNA, Bacterial - genetics | Bacteria - classification | RNA, Ribosomal, 16S - genetics | Sequence Analysis, DNA - methods | DNA, Ribosomal - genetics
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
7. Full Text [INVITED] Electrophoretic plasmonic nanopore biochip genome sequencer
by Mendoza, Edgar A and Neumann, Alexander and Kuznetsova, Yuliya and Brueck, Steve R.J and Edwards, Jeremy
Optics and Laser Technology, ISSN 0030-3992, 01/2019, Volume 109, pp. 199 - 211
Our research group is investigating a novel DNA sequencing methodology based on an electrophoretic plasmonic nanopore (EPIGeneS) biochip system used to control... 
Electrophoretic DNA translocation | Fractal nanopores | Plasmonic nanopores | Surface enhance Raman spectroscopy | DNA sequencing | PHYSICS, APPLIED | DNA | OPTICS
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
8. Full Text Full-length HLA class I genotyping with the minion nanopore sequencer
by Lang, Kathrin and Surendranath, Vineeth and Quenzel, Philipp and Schöfl, Gerhard and Schmidt, Alexander H and Lange, Vinzenz
Methods in Molecular Biology, ISSN 1064-3745, 2018, Volume 1802, pp. 155 - 162
Nanopore sequencing, a paradigm change in sequencing technologies, offers a new cost-effective and scalable platform for HLA genotyping. Among the new... 
Full-length | MinION | Genotyping | HLA | Nanopore sequencing | Gene Library | Humans | Histocompatibility Antigens Class I - genetics | High-Throughput Nucleotide Sequencing - instrumentation | Genotyping Techniques - methods | High-Throughput Nucleotide Sequencing - methods | Nanopores
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
9. Full Text Bacterial and viral identification and differentiation by amplicon sequencing on the MinION nanopore sequencer
by Kilianski, Andy and Haas, Jamie L and Corriveau, Elizabeth J and Liem, Alvin T and Willis, Kristen L and Kadavy, Dana R and Rosenzweig, C N and Minot, Samuel S
GigaScience, ISSN 2047-217X, 03/2015, Volume 4, Issue 1, pp. 12 - 12
Background: The MinION (TM) nanopore sequencer was recently released to a community of alpha-testers for evaluation using a variety of sequencing applications.... 
Poxvirus | Amplicon | Whole genome sequencing | Escherichia coli | Long-read sequencing | MinION | Oxford Nanopore | Pathogen detection | Nanopore | NGS | SINGLE | MULTIDISCIPLINARY SCIENCES | MinION (TM) | DISCRIMINATION | DNA | Classification - methods | Viruses - genetics | Nanopores | Bacteria - genetics | Sequence Analysis, DNA - methods
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
10. Full Text An identification protocol for ESBL-producing Gram-negative bacteria bloodstream infections using a MinION nanopore sequencer
by Sakai, J and Tarumoto, N and Kodana, M and Ashikawa, S and Imai, K and Kawamura, T and Ikebuchi, K and Murakami, T and Mitsutake, K and Maeda, T and Maesaki, S
JOURNAL OF MEDICAL MICROBIOLOGY, ISSN 0022-2615, 08/2019, Volume 68, Issue 8, pp. 1219 - 1226
Purpose. The new third-generation sequencing platform MinION is an attractive maintenance-free and disposable portable tool that can perform long-read and... 
nanopore sequencer | 16S rRNA | MinION | MICROBIOLOGY | bloodstream infection | TIME | CEPHALOSPORINS | extended-spectrum beta-lactamase | DNA EXTRACTION | MALDI-TOF MS | EXPANSION | RESISTANCE | CULTURES | RAPID DETECTION | EPIDEMIOLOGY | ENTEROBACTERIACEAE | PATHOGENS
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
11. Full Text GENOMICS Pocket DNA sequencers make real-time diagnostics a reality
by Pennisi, E
SCIENCE, ISSN 0036-8075, 02/2016, Volume 351, Issue 6275, pp. 800 - 801
MULTIDISCIPLINARY SCIENCES | DNA - genetics | Sequence Analysis, DNA - instrumentation | DNA - chemistry | Hemorrhagic Fever, Ebola - diagnosis | Urinary Tract Infections - diagnosis | Genome, Viral - genetics | Genomics | Humans | Nanopores | Nanotechnology
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
12. Full Text SMURF-seq: efficient copy number profiling on long-read sequencers
by Prabakar, RK and Xu, LY and Hicks, J and Smith, AD
GENOME BIOLOGY, ISSN 1474-760X, 07/2019, Volume 20, Issue 1, pp. 134 - 9
We present SMURF-seq, a protocol to efficiently sequence short DNA molecules on a long-read sequencer by randomly ligating them to form long molecules.... 
Copy number variation | Nanopore sequencing | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | GENETICS & HEREDITY | Long-read sequencing | TIME | Read-counting applications | GENOME
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
13. Full Text Rapid identification of pathogens from positive blood culture bottles with the MinION nanopore sequencer
by Ashikawa, Sae and Ashikawa, Sae and Tarumoto, Norihito and Tarumoto, Norihito and Imai, Kazuo and Imai, Kazuo and Sakai, Jun and Sakai, Jun and Kodana, Masahiro and Kodana, Masahiro and Kawamura, Toru and Kawamura, Toru and Ikebuchi, Kenji and Ikebuchi, Kenji and Murakami, Takashi and Murakami, Takashi and Mitsutake, Kotaro and Mitsutake, Kotaro and Maesaki, Shigefumi and Maesaki, Shigefumi and Maeda, Takuya and Maeda, Takuya
Journal of medical microbiology, ISSN 0022-2615, 11/2018, Volume 67, Issue 11, pp. 1589 - 1595
Purpose. Bloodstream infections are major causes of morbidity and mortality that lead to prolonged hospital stays and higher medical costs. In this study, we... 
16S rRNA | ITS | MinION | bloodstream infection | candidemia | sequencing | BACTERIA | CANDIDA | ESCHERICHIA-COLI | MICROBIOLOGY | STREAM INFECTIONS | DNA EXTRACTION | FILMARRAY | FLIGHT MASS-SPECTROMETRY | POLYMERASE-CHAIN-REACTION | DESORPTION IONIZATION-TIME | SPECIES-LEVEL | DNA, Fungal - genetics | Humans | Fungi - isolation & purification | DNA, Fungal - isolation & purification | Fungemia - blood | Nanopores | Fungi - genetics | Polymerase Chain Reaction - methods | Bacteremia - microbiology | Sequence Analysis, DNA - instrumentation | Blood Culture - methods | Bacteremia - blood | Bacteria - classification | Fungi - pathogenicity | Candida - genetics | DNA, Bacterial - isolation & purification | Bacteremia - diagnosis | Sequence Analysis, DNA - statistics & numerical data | Fungemia - microbiology | Bacteria - genetics | Candida - isolation & purification | Fungemia - diagnosis | Blood Culture - instrumentation | Bacteria - isolation & purification | DNA, Bacterial - genetics | Candida - pathogenicity | Escherichia coli - genetics | Escherichia coli - isolation & purification | Bacteria - pathogenicity | High-Throughput Nucleotide Sequencing | Sequence Analysis, DNA - economics | Sequence Analysis, DNA - methods
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
14. Full Text Pores for thought: preimplantation genetic testing using a nanopore-based DNA sequencer
by Fragouli, Elpida and Wells, Dagan
Fertility and Sterility, ISSN 0015-0282, 10/2018, Volume 110, Issue 5, pp. 853 - 855
REPRODUCTIVE BIOLOGY | OBSTETRICS & GYNECOLOGY | Pregnancy | Genetic Testing | DNA | Humans | Preimplantation Diagnosis | Female | Nanopores | Sequence Analysis, DNA
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
15. Full Text Real-time DNA sequencing in the antarctic dry valleys using the Oxford nanopore sequencer
by Johnson, Sarah S and Zaikova, Elena and Goerlitz, David S and Bai, Yu and Tighe, Scott W
Journal of Biomolecular Techniques, ISSN 1524-0215, 04/2017, Volume 28, Issue 1, pp. 2 - 7
The ability to sequence DNA outside of the laboratory setting has enabled novel research questions to be addressed in the field in diverse areas, ranging from... 
MinION | Antarctica | Nanopore sequencing | Extremophiles | Antarctic Regions | Sequence Analysis, DNA - instrumentation | Reference Standards | Environmental Microbiology | Bacteriophage lambda - genetics | High-Throughput Nucleotide Sequencing - instrumentation | Desert Climate | Molecular Typing - instrumentation | extremophiles | Short Communication
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
16. Full Text Characterization of two multidrug-resistant IncA/C plasmids from the 1960s by using the MinION sequencer device
by Szabó, Mónika and Nagy, Tibor and Wilk, Tímea and Farkas, Tibor and Hegyi, Anna and Olasz, Ferenc and Kiss, János
Antimicrobial Agents and Chemotherapy, ISSN 0066-4804, 11/2016, Volume 60, Issue 11, pp. 6780 - 6786
Two A/C incompatibility group (IncA/C family) plasmids from the 1960s have been sequenced and classified into the A/C2 type 1 group. R16a and IP40a contain... 
ELEMENT | GENES | SALMONELLA | MICROBIOLOGY | PHARMACOLOGY & PHARMACY | BACTERIAL | IDENTIFICATION | COMPLETE NUCLEOTIDE-SEQUENCE | ANTIMICROBIAL RESISTANCE | NANOPORE SEQUENCER | GENOME | STREPTOMYCIN | Conjugation, Genetic | Genome, Bacterial | Plasmids - history | Escherichia coli - drug effects | History, 20th Century | Genomic Islands | Plasmids - metabolism | Sequence Analysis, DNA | DNA Transposable Elements | Automation, Laboratory | DNA, Bacterial - genetics | beta-Lactamases - genetics | Escherichia coli - genetics | Plasmids - chemistry | Anti-Bacterial Agents - pharmacology | Escherichia coli - growth & development | Drug Resistance, Multiple, Bacterial - genetics
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
17. Full Text Rapid bacterial identification by direct PCR amplification of 16S rRNA genes using the MinION™ nanopore sequencer
by Kai, Shinichi and Matsuo, Yoshiyuki and Nakagawa, So and Kryukov, Kirill and Matsukawa, Shino and Tanaka, Hiromasa and Iwai, Teppei and Imanishi, Tadashi and Hirota, Kiichi
FEBS Open Bio, ISSN 2211-5463, 03/2019, Volume 9, Issue 3, pp. 548 - 557
Rapid identification of bacterial pathogens is crucial for appropriate and adequate antibiotic treatment, which significantly improves patient outcomes. 16S... 
nanopore sequencer | 16S rRNA | MinION | bacterial identification | direct PCR | PHYLOGENETIC ANALYSIS | BIOCHEMISTRY & MOLECULAR BIOLOGY | DIVERSITY | ENVIRONMENTAL-SAMPLES | CLINICAL MICROBIOLOGY | PATHOGENS
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
18. Full Text An innovative diagnostic technology for the codon mutation C580Y in kelch13 of Plasmodium falciparum with MinION nanopore sequencer
by Imai, Kazuo and Tarumoto, Norihito and Runtuwene, Lucky Ronald and Sakai, Jun and Hayashida, Kyoko and Eshita, Yuki and Maeda, Ryuichiro and Tuda, Josef and Ohno, Hideaki and Murakami, Takashi and Maesaki, Shigefumi and Suzuki, Yutaka and Yamagishi, Junya and Maeda, Takuya
Malaria Journal, ISSN 1475-2875, 05/2018, Volume 17, Issue 1, pp. 217 - 11
Background: The recent spread of artemisinin (ART)-resistant Plasmodium falciparum represents an emerging global threat to public health. In Southeast Asia,... 
Artemisinin resistance | Plasmodium falciparum | Malaria | MinION | kelch 13 | LAMP | Nanopore sequencer | INFECTIOUS DISEASES | ASSAY | MEDIATED ISOTHERMAL AMPLIFICATION | DENGUE VIRUS SEROTYPES | ELIMINATION | HAEMOPHILUS-INFLUENZAE | TROPICAL MEDICINE | MinION (TM) | POLYMERASE-CHAIN-REACTION | MALARIA DIAGNOSIS | RAPID DETECTION | PARASITOLOGY | Malaria, Falciparum - parasitology | Nucleic Acid Amplification Techniques - methods | Humans | Plasmodium falciparum - genetics | Plasmodium falciparum - isolation & purification | Malaria, Falciparum - classification | Mutation | Nanopores | Protozoan Proteins - genetics | Indonesia | Usage | Gene mutations | Causes of | Genetic aspects | Nucleotide sequencing | Research | Risk factors | DNA sequencing | Protocols | Methodology | Laboratories | Artemisinin | Erythrocytes | Developing countries | Procedures | Parasites | Nucleotides | Developing countries--LDCs | Sequencing | Public health | Deoxyribonucleic acid--DNA | Vector-borne diseases | Evaluation | Mutations | Human diseases | Nucleotide sequence | Health risks | Polymerase chain reaction | Plasmids | DNA | Detection
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
19. Full Text GENOMICS DNA Sequencers Still Waiting for The Nanopore Revolution
by Pennisi, E
SCIENCE, ISSN 0036-8075, 02/2014, Volume 343, Issue 6173, pp. 829 - 830
MULTIDISCIPLINARY SCIENCES | Genomics - instrumentation | Sequence Analysis, DNA - instrumentation | Animals | Humans | Genome - genetics | Sequence Analysis, DNA - economics |