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1. Full Text Functional 5' UTR motif discovery with LESMoN: Local enrichment of sequence motifs in biological networks
by Lavallee-Adam, Mathieu and Cloutier, Philippe and Coulombe, Benoit and Blanchette, Mathieu
Nucleic Acids Research, ISSN 0305-1048, 10/2017, Volume 45, Issue 18, pp. 10415 - 10427
Biological networks are rich representations of the relationships between entities such as genes or proteins and have become increasingly complete thanks to... 
TANDEM AFFINITY PURIFICATION | REGULATORY MOTIFS | GENE SET ENRICHMENT | MESSENGER-RNA | NONCODING SEQUENCES | BIOCHEMISTRY & MOLECULAR BIOLOGY | PROTEIN INTERACTION NETWORKS | RANKED LISTS | TRANSLATION | TRANSCRIPTION FACTOR | MASS-SPECTROMETRY | Computational Biology - methods | Genetic Association Studies | Humans | Gene Expression Regulation | 5' Untranslated Regions - genetics | Binding Sites - genetics | Gene Regulatory Networks | Transcription Factors - metabolism | Algorithms | Protein Interaction Maps - genetics | Regulatory Elements, Transcriptional | Mutation | Gene Ontology | Computational Biology
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2. Full Text acc-Motif: Accelerated Network Motif Detection
by Meira, Luis A. A and Maximo, Vinicius R and Fazenda, Alvaro L and da Conceicao, Arlindo F
IEEE/ACM Transactions on Computational Biology and Bioinformatics, ISSN 1545-5963, 09/2014, Volume 11, Issue 5, pp. 853 - 862
Network motif algorithms have been a topic of research mainly after the 2002-seminal paper from Milo et al. [1], which provided motifs as a way to uncover the... 
Educational institutions | Acceleration | Bioinformatics | Time complexity | Complex networks | Computational biology | Network motifs | Algorithm analysis | Subgraph counting | algorithm analysis | COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS | MATHEMATICS, INTERDISCIPLINARY APPLICATIONS | subgraph counting | ALGORITHM | BIOCHEMICAL RESEARCH METHODS | STATISTICS & PROBABILITY | ARBORICITY | DISCOVERY | TOOL | Gene Regulatory Networks | Computational Biology - methods | Algorithms | Networks | Computation | Data sets | Graph theory | Biology | Counting
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3. Full Text Motif and Hypergraph Correlation Clustering
by Li, Pan and Puleo, Gregory J and Milenkovic, Olgica
IEEE Transactions on Information Theory, ISSN 0018-9448, 9/2019, pp. 1 - 1
Motivated by applications in social and biological network analysis we introduce a new form of agnostic clustering termed motif correlation clustering, which... 
Correlation | hypergraph | Clustering methods | Image edge detection | Clustering algorithms | Approximation algorithms | Linear programming | Biological information theory | network motif | correlation clustering | graph clustering
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4. Full Text Unravelling daily human mobility motifs
by Schneider, Christian M and Belik, Vitaly and Couronné, Thomas and Smoreda, Zbigniew and González, Marta C
Journal of the Royal Society Interface, ISSN 1742-5689, 07/2013, Volume 10, Issue 84, p. 20130246
Human mobility is differentiated by time scales. While the mechanism for long time scales has been studied, the underlying mechanism on the daily scale is... 
Mobile phone | Networks | Motifs | Human dynamics | 6-WEEK TRAVEL DIARY | METAPOPULATION MODELS | BEHAVIOR | MULTIDISCIPLINARY SCIENCES | PATTERNS | networks | human dynamics | HEAVY TAILS | mobile phone | motifs | DYNAMICS | SPREAD | SCALING LAWS | COMMUNICATION | Motor Activity - physiology | Travel | Markov Chains | Circadian Rhythm - physiology | Models, Biological | Humans | 1004 | 120
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5. Full Text Arabidopsis Motif Scanner
by Mele, Giovanni
BMC Bioinformatics, ISSN 1471-2105, 01/2016, Volume 17, Issue 1, p. 50
Background: The major mechanism driving cellular differentiation and organism development is the regulation of gene expression. Cis-acting enhancers and... 
cis-elements | Arabidopsis | Gene network | DNA Chip Array | Binding motif | Gene expression | Next Generation Sequencing | BIOCHEMICAL RESEARCH METHODS | GENOMICS | CONSERVED NONCODING SEQUENCES | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | DNA | MATHEMATICAL & COMPUTATIONAL BIOLOGY | Arabidopsis - genetics | Transcription Factors - metabolism | Arabidopsis Proteins - genetics | Oligonucleotide Array Sequence Analysis | Gene Expression Regulation, Plant | High-Throughput Nucleotide Sequencing | Software | Amino Acid Motifs - genetics | Gene Regulatory Networks | Binding Sites | Physiological aspects | Usage | Genetic transcription | Research | Genetic algorithms
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6. Full Text Motifs in Brain Networks
by Sporns, Olaf and Kötter, Rolf
PLoS Biology, ISSN 1544-9173, 11/2004, Volume 2, Issue 11, pp. 1910 - 1918
Complex brains have evolved a highly efficient network architecture whose structural connectivity is capable of generating a large repertoire of functional... 
ORGANIZATION | NERVOUS-SYSTEM | INTEGRATION | INFORMATION | BIOCHEMISTRY & MOLECULAR BIOLOGY | BIOLOGY | FUNCTIONAL CONNECTIVITY | NEURAL SYSTEMS | COGNITION | PRIMATE CEREBRAL-CORTEX | COMPLEX NETWORKS | ANATOMICAL CONNECTIVITY | Models, Theoretical | Brain - anatomy & histology | Species Specificity | Humans | Computational Biology | Gene Expression Regulation | Neurobiology | Neuroanatomy - methods | Amino Acid Motifs | Caenorhabditis elegans | Algorithms | Animals | Models, Biological | Computer Simulation | Nerve Net | Brain - pathology | Brain Mapping | Macaca | Neurons - metabolism | Models, Neurological | Primates | Caenorhabditis | Neuroscience | Systems Biology | Studies | Optimization algorithms | Brain | Hypotheses | Behavior | Network topologies
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7. Full Text Attributes of short linear motifs
by Davey, Norman E and Van Roey, Kim and Weatheritt, Robert J and Toedt, Grischa and Uyar, Bora and Altenberg, Brigitte and Budd, Aidan and Diella, Francesca and Dinkel, Holger and Gibson, Toby J
Molecular bioSystems, ISSN 1742-206X, 01/2012, Volume 8, Issue 1, pp. 268 - 281
Traditionally, protein-protein interactions were thought to be mediated by large, structured domains. However, it has become clear that the interactome... 
Protein Structure, Tertiary | Humans | Protein Folding | Amino Acid Motifs | Amino Acids - metabolism | Repetitive Sequences, Amino Acid | Sequence Alignment | Animals | Proteins - metabolism | Databases, Protein | Conserved Sequence | Hydrophobic and Hydrophilic Interactions | Proteins - chemistry | Evolution, Molecular
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8. Full Text An EB1-Binding Motif Acts as a Microtubule Tip Localization Signal
by Honnappa, Srinivas and Gouveia, Susana Montenegro and Weisbrich, Anke and Damberger, Fred F and Bhavesh, Neel S and Jawhari, Hatim and Grigoriev, Ilya and van Rijssel, Frederik J.A and Buey, Ruben M and Lawera, Aleksandra and Jelesarov, Ilian and Winkler, Fritz K and Wüthrich, Kurt and Akhmanova, Anna and Steinmetz, Michel O
Cell, ISSN 0092-8674, 2009, Volume 138, Issue 2, pp. 366 - 376
Microtubules are filamentous polymers essential for cell viability. Microtubule plus-end tracking proteins (+TIPs) associate with growing microtubule plus ends... 
CELLBIO | IN-VITRO | PROTEIN | MCAK | RECOGNITION | EB1 | NMR-SPECTROSCOPY | BIOCHEMISTRY & MOLECULAR BIOLOGY | DYNAMICS | NETWORKS | PLUS-END-TRACKING | CAP-GLY DOMAINS | CELL BIOLOGY | Microtubule-Associated Proteins - chemistry | Amino Acid Sequence | Phosphorylation | Microtubule-Associated Proteins - metabolism | Humans | Models, Molecular | Molecular Sequence Data | Crystallography, X-Ray | Protein Sorting Signals | Amino Acid Motifs | Sequence Alignment | Animals | Microtubules - chemistry | Mice | Proteins | Polypeptides | Chemical properties | Kinesin
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9. Full Text A Series of Lanthanide−Transition Metal Frameworks Based on 1-, 2-, and 3D Metal−Organic Motifs Linked by Different 1D Copper(I) Halide Motifs
by Cheng, Jian-Wen and Zheng, Shou-Tian and Yang, Guo-Yu
Inorganic Chemistry, ISSN 0020-1669, 11/2007, Volume 46, Issue 24, pp. 10261 - 10267
Hydrothermal reactions of lanthanide(III) oxide and copper halide with isonicotinic acid (Hina) and pyridine-2,3-dicarboxylic acid (H2pdc) or... 
MAGNETISM | OXIDE CHAINS | DESIGN | CLUSTERS | HETERONUCLEAR COMPLEXES | CRYSTAL-STRUCTURE | LINKAGES | NETWORKS | COORDINATION POLYMERS | ARCHITECTURES | CHEMISTRY, INORGANIC & NUCLEAR | Rare earth metals | Carboxylic acids | Chemical properties | Organometallic compounds
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10. Full Text Attributes of short linear motifs
by Davey, Norman E and Van Roey, Kim and Weatheritt, Robert J and Toedt, Grischa and Uyar, Bora and Altenberg, Brigitte and Budd, Aidan and Diella, Francesca and Dinkel, Holger and Gibson, Toby J
Molecular BioSystems, ISSN 1742-206X, 01/2012, Volume 8, Issue 1, pp. 268 - 281
Traditionally, protein-protein interactions were thought to be mediated by large, structured domains. However, it has become clear that the interactome... 
TRANSCRIPTION FACTORS | ANAPHASE-PROMOTING COMPLEX | LOCALIZATION SIGNAL | STRUCTURAL BASIS | PHOSPHORYLATION | BIOCHEMISTRY & MOLECULAR BIOLOGY | INTRINSICALLY UNSTRUCTURED PROTEINS | DISORDERED PROTEINS | INTERACTION NETWORKS | CELL-CYCLE | P53 TUMOR-SUPPRESSOR
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11. Full Text ELM: The status of the 2010 eukaryotic linear motif resource
by Gould, Cathryn M and Diella, Francesca and Via, Allegra and Puntervoll, Pål and Gemünd, Christine and Chabanis-Davidson, Sophie and Michael, Sushama and Sayadi, Ahmed and Bryne, Jan Christian and Chica, Claudia and Seiler, Markus and Davey, Norman E and Haslam, Niall and Weatheritt, Robert J and Budd, Aidan and Hughes, Tim and Paś, Jakub and Rychlewski, Leszek and Travé, Gilles and Aasland, Rein and Helmer-Citterich, Manuela and Linding, Rune and Gibson, Toby J
Nucleic Acids Research, ISSN 0305-1048, 11/2009, Volume 38, Issue 1, pp. D167 - D180
Linear motifs are short segments of multidomain proteins that provide regulatory functions independently of protein tertiary structure. Much of intracellular... 
TRANSCRIPTION FACTORS | INTRINSIC DISORDER | COMPLEX | DATABASE | BIOCHEMISTRY & MOLECULAR BIOLOGY | INTERACTION NETWORKS | PROTEIN-PHOSPHORYLATION | SEQUENCE MOTIF | CAP-GLY DOMAINS | PEPTIDE-MEDIATED INTERACTIONS | PREDICTION | Protein Structure, Tertiary | Amino Acid Sequence | Eukaryotic Cells - chemistry | Computational Biology - methods | Information Storage and Retrieval - methods | Humans | Computational Biology - trends | Databases, Genetic | Molecular Sequence Data | Sequence Homology, Amino Acid | Animals | Databases, Protein | Software | Internet | Amino Acid Motifs - genetics | Databases, Nucleic Acid | Biological Sciences | Naturvetenskap | Natural Sciences | Bioinformatik och systembiologi | Bioinformatics and Systems Biology | Biologiska vetenskaper
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12. Full Text Multilayer motif analysis of brain networks
by Battiston, Federico and Nicosia, Vincenzo and Chavez, Mario and Latora, Vito
Chaos: An Interdisciplinary Journal of Nonlinear Science, ISSN 1054-1500, 04/2017, Volume 27, Issue 4, p. 047404
In the last decade, network science has shed new light both on the structural (anatomical) and on the functional (correlations in the activity) connectivity... 
STATE FUNCTIONAL CONNECTIVITY | ORGANIZATION | MATHEMATICS, APPLIED | INTEGRATION | INFORMATION | DISORDERS | SOCIAL NETWORKS | PHYSICS, MATHEMATICAL | STRUCTURAL CONNECTIVITY | COMPLEX NETWORKS | MACAQUE CORTEX | MULTIPLEX NETWORKS
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