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Journal of the American Chemical Society, ISSN 0002-7863, 08/2013, Volume 135, Issue 32, pp. 12112 - 12121
Urea, a polar molecule with a large dipole moment, not only destabilizes folded RNA structures but can also enhance the folding rates of large ribozymes.... 
Nucleic Acid Denaturation | Urea - metabolism | Riboswitch | Nucleic Acid Conformation | Molecular Dynamics Simulation | Water - metabolism | Index Medicus
Journal Article
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 7/2010, Volume 107, Issue 30, pp. 13294 - 13299
Journal Article
Scientific Reports, ISSN 2045-2322, 01/2015, Volume 5, Issue 1, pp. 7655 - 7655
We predict a novel conformational regime for DNA, where denaturation bubbles form at the tips of plectonemes, and study its properties using coarse-grained... 
ELASTICITY | DYNAMICS | TWEEZERS | SIMULATIONS | MOLECULE | MULTIDISCIPLINARY SCIENCES | Nucleic Acid Denaturation | Thermodynamics | DNA, Superhelical - chemistry | Plasmids - chemistry | DNA, Superhelical - metabolism | Diffusion | Nucleic Acid Conformation | Supercoiling | Biological control | Denaturation | Deoxyribonucleic acid--DNA | Index Medicus
Journal Article
Physical Review Letters, ISSN 0031-9007, 11/2010, Volume 105, Issue 20, pp. 208101 - 208101
We present a theoretical framework for the thermodynamic properties of supercoiling-induced denaturation bubbles in circular double-stranded DNA molecules. We... 
DYNAMICS | MODEL | SEQUENCES | PHYSICS, MULTIDISCIPLINARY | LOCAL DENATURATION | REGIONS | DNA-Binding Proteins - metabolism | Nucleic Acid Denaturation | Base Pairing | DNA, Superhelical - chemistry | Plasmids - chemistry | Microscopy, Atomic Force | Nucleic Acid Conformation | Index Medicus
Journal Article
Environmental Microbiology, ISSN 1462-2912, 11/2002, Volume 4, Issue 11, pp. 770 - 773
G+C mol% content in microorganisms is one of the recommended characteristics for the standard description of bacterial species. In this study we present a... 
PYROCOCCUS | MICROBIOLOGY | BACTERIAL SYSTEMATICS | Nucleic Acid Denaturation | DNA, Bacterial - analysis | Temperature | Calibration | Fluorometry | Base Composition | Index Medicus
Journal Article
Journal of Chemical Physics, ISSN 0021-9606, 01/2015, Volume 142, Issue 3, pp. 034903 - 034903
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 04/2013, Volume 41, Issue 7, pp. 4253 - 4265
To date, single-molecule RNA science has been developed almost exclusively around the effect of metal ions as folding promoters and stabilizers of the RNA... 
LIGAND-BINDING | APTAMER DOMAIN | RNA | PURINE RIBOSWITCH | SENSING RIBOSWITCHES | BIOCHEMISTRY & MOLECULAR BIOLOGY | CONFORMATIONAL CAPTURE | TRANSITION-STATE | TERTIARY STRUCTURE | GUANINE | ADENINE RIBOSWITCH | Fluorescence Resonance Energy Transfer | Nucleic Acid Denaturation | Ligands | Magnesium - chemistry | Riboswitch | Urea - chemistry | Index Medicus
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 07/2005, Volume 33, Issue 2, pp. W577 - W581
The DINAMelt web server simulates the melting of one or two single-stranded nucleic acids in solution. The goal is to predict not just a melting temperature... 
BIOCHEMISTRY & MOLECULAR BIOLOGY | HYBRIDIZATION | Nucleic Acid Denaturation | User-Computer Interface | DNA - chemistry | Nucleic Acid Hybridization | Temperature | Algorithms | Sequence Analysis, RNA | Software | Internet | RNA - chemistry | Sequence Analysis, DNA | Index Medicus
Journal Article
Physical Review Letters, ISSN 0031-9007, 01/2008, Volume 100, Issue 1, pp. 018106 - 018106
We generalize the Poland-Scheraga model to consider DNA denaturation in the presence of an external stretching force. We demonstrate the existence of a... 
SHAPE | PHYSICS, MULTIDISCIPLINARY | SELF-AVOIDING WALK | HELIX | POLYMER CHAIN | PROTEINS | MOLECULES | DEPENDENCE | Nucleic Acid Denaturation | DNA - chemistry | Models, Chemical | Nucleic Acid Conformation | DNA, Single-Stranded - chemistry | Index Medicus
Journal Article
Lab on a Chip, ISSN 1473-0197, 8/2012, Volume 12, Issue 18, pp. 3314 - 3321
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 07/2003, Volume 31, Issue 13, pp. 3406 - 3415
Journal Article