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61. Full Text OsTGAP1, a bZIP Transcription Factor, Coordinately Regulates the Inductive Production of Diterpenoid Phytoalexins in Rice
by Atsushi Okada and Kazunori Okada and Koji Miyamoto and Jinichiro Koga and Naoto Shibuya and Hideaki Nojiri and Hisakazu Yamane
Journal of Biological Chemistry, ISSN 0021-9258, 09/2009, Volume 284, Issue 39, pp. 26510 - 26518
Production of major diterpenoid phytoalexins, momilactones and phytocassanes, is induced in rice upon recognition of pathogenic invasion as plant... 
ELICITOR | ORYZA-SATIVA | DNA-BINDING | BIOSYNTHESIS | BIOCHEMISTRY & MOLECULAR BIOLOGY | PLANT DEFENSE | FUNCTIONAL-ANALYSIS | GENE-EXPRESSION | ARABIDOPSIS | PLASMA-MEMBRANE | DISEASE RESISTANCE | Basic-Leucine Zipper Transcription Factors - metabolism | Oligonucleotide Array Sequence Analysis | Oryza - metabolism | Molecular Sequence Data | Immunoblotting | Promoter Regions, Genetic - genetics | Terpenes - chemistry | Terpenes - metabolism | Oryza - genetics | Base Sequence | Plants, Genetically Modified | Sesquiterpenes | Gene Expression Regulation, Plant | Electrophoretic Mobility Shift Assay | Molecular Structure | Plant Proteins - metabolism | Response Elements - genetics | Lactones - chemistry | Basic-Leucine Zipper Transcription Factors - genetics | Lactones - metabolism | Reverse Transcriptase Polymerase Chain Reaction | Oligonucleotide Probes - metabolism | Plant Proteins - genetics | Oligonucleotide Probes - genetics | Protein Binding | Transcription, Chromatin, and Epigenetics
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62. Full Text Scaffolding along Nucleic Acid Duplexes Using 2′-Amino-Locked Nucleic Acids
by Astakhova, I. Kira and Wengel, Jesper
Accounts of Chemical Research, ISSN 0001-4842, 06/2014, Volume 47, Issue 6, pp. 1768 - 1777
Conspectus Incorporation of chemically modified nucleotide scaffolds into nucleic acids to form assemblies rich in function is an innovative area with great... 
FLUORESCENT DNA PROBES | NUCLEOTIDES | IN-VITRO | MONOMERS | STABILITY | NUCLEOSIDES | ANTISENSE OLIGONUCLEOTIDE | TRIPLEX-FORMING OLIGONUCLEOTIDES | PYRENE-FUNCTIONALIZED 2'-AMINO-LNA | CHEMISTRY, MULTIDISCIPLINARY | LNA | Fluorescent Dyes - chemistry | Oligonucleotides - chemistry | Molecular Probe Techniques | Chemistry Techniques, Synthetic | Nanotechnology - methods | DNA Probes - chemistry | Drug Discovery - methods | Oligonucleotides - chemical synthesis | Nucleic Acid Heteroduplexes - chemistry | DNA - chemistry | Polycyclic Aromatic Hydrocarbons - chemistry | Biosensing Techniques | DNA Probes - metabolism | Nanostructures - chemistry | Nucleic Acid Conformation | Nucleic acids | Chemical properties | Research | Nanotechnology | Index Medicus | Biomedical materials | Deoxyribonucleic acid | Imaging | Fluorescence | Biocompatibility | Materials science | Scaffolds
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63. Full Text Fluorescent protein‐based molecular beacons by zinc finger protein‐guided assembly
by Blackstock, Daniel and Sun, Qing and Chen, Wilfred
Biotechnology and Bioengineering, ISSN 0006-3592, 02/2015, Volume 112, Issue 2, pp. 236 - 241
ABSTRACT Molecular beacons (MBs) are stem‐loop structured oligonucleotides capable of sensitive and specific nucleic acid detection. However, large‐scale usage... 
detection | mRNA | in vivo | Detection | MRNA | In vivo | RNA | RESONANCE ENERGY-TRANSFER | HYBRIDIZATION | GREEN | CANCER | PROBES | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | FRET | CYAN | LIVING CELLS | Fluorescent Dyes - chemistry | Molecular Probe Techniques | RNA, Messenger - genetics | Fluorescent Dyes - metabolism | Recombinant Fusion Proteins - chemistry | RNA, Messenger - metabolism | Recombinant Fusion Proteins - metabolism | Molecular Probes - chemistry | Molecular Probes - metabolism | Escherichia coli - genetics | Sensitivity and Specificity | Cloning, Molecular | Escherichia coli - metabolism | Luminescent Proteins - chemistry | Recombinant Fusion Proteins - genetics | Luminescent Proteins - genetics | Zinc Fingers - genetics | Molecular Probes - genetics | Luminescent Proteins - metabolism | Fluorescence | DNA binding proteins | Proteins | Bioengineering | Fretting | Fingers | Beacons | Oligonucleotides | Zinc | Assembly
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64. Full Text Maximizing Mismatch Discrimination by Surface-Tethered Locked Nucleic Acid Probes via Ionic Tuning
by Mishra, Sourav and Ghosh, Srabani and Mukhopadhyay, Rupa
Analytical Chemistry, ISSN 0003-2700, 02/2013, Volume 85, Issue 3, pp. 1615 - 1623
Several investigations on DNA-based nucleic acid sensors performed in the past few years point toward the requirement of an alternative nucleic acid that can... 
REAL-TIME PCR | OLIGONUCLEOTIDE PROBES | GOLD SURFACES | CHEMISTRY, ANALYTICAL | GOLD SURFACE | RECOGNITION | QUARTZ-CRYSTAL MICROBALANCE | BIOSENSOR | DNA HYBRIDIZATION | LNA | PLASMON RESONANCE | Oligonucleotides - genetics | Oligonucleotides - metabolism | Base Pair Mismatch - physiology | Nucleic Acid Probes - genetics | Surface Properties | Nucleic Acid Probes - metabolism | Nucleic acid probes | Research | Structure | DNA
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65. Full Text Detection of cancer cells using triplex DNA molecular beacons based on expression of enhanced green fluorescent protein (eGFP)
by Xi, Dongmei and Wang, Xindong and Ai, Shiyun and Zhang, Shusheng
Chemical communications (Cambridge, England), ISSN 1359-7345, 08/2014, Volume 50, Issue 67, pp. 9547 - 9549
A novel strategy was proposed for Ramos cell detection by combining the expression of enhanced green fluorescent protein (eGFP) with the cell aptamer... 
Gene Expression | Humans | Aptamers, Nucleotide - chemistry | Green Fluorescent Proteins - genetics | Aptamers, Nucleotide - metabolism | Cell Separation - methods | DNA - metabolism | Oligonucleotide Probes - metabolism | DNA - genetics | Aptamers, Nucleotide - genetics | DNA - chemistry | Base Sequence | Oligonucleotide Probes - genetics | Cell Line, Tumor | Oligonucleotide Probes - chemistry
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66. Full Text Fluorescence based strategies for genetic analysis
by Ranasinghe, Rohan T and Brown, Tom
Chemical Communications, ISSN 1359-7345, 11/2005, Issue 44, pp. 5487 - 5502
Synthetic chemistry has been central to the design of modern methods of genetic analysis. In this article, we discuss the underlying chemistry and biophysical... 
REAL-TIME PCR | POLYMERASE-CHAIN-REACTION | NUCLEIC-ACID HYBRIDIZATION | SCORPION PRIMERS | THIAZOLE ORANGE | RESONANCE ENERGY-TRANSFER | MOLECULAR BEACONS | LABELED OLIGONUCLEOTIDES | QUANTITATIVE RT-PCR | LIGHT-UP PROBES | CHEMISTRY, MULTIDISCIPLINARY | DNA - chemistry | DNA - analysis | DNA Probes - metabolism | Polymerase Chain Reaction | DNA Probes - genetics | Fluorescence | Molecular Structure
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67. Full Text Fluorescence turn-on detection of a protein through the displaced single-stranded DNA binding protein binding to a molecular beacon
by Tang, Dan and Liao, Dongli and Zhu, Qiankun and Wang, Fangyuan and Jiao, Huping and Zhang, Yujing and Yu, Cong
Chemical Communications, ISSN 1359-7345, 05/2011, Volume 47, Issue 19, pp. 5485 - 5487
A new approach has been developed for the highly sensitive and selective sensing of a protein. Lysozyme binding to its aptamer prevents SSB protein binding,... 
RECOGNITION | ESCHERICHIA-COLI | LYSOZYME | APTAMER | PROBE | CHEMISTRY, MULTIDISCIPLINARY | MASS-SPECTROMETRY | DNA-Binding Proteins - metabolism | Animals | Cattle | Humans | Protein Binding | Spectrometry, Fluorescence | Biosensing Techniques - methods | Escherichia coli Proteins - metabolism | Aptamers, Nucleotide - metabolism | Oligonucleotide Probes - metabolism
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68. Full Text Sensitive detection of cytokine in complex biological samples by using MB track mediated DNA walker and nicking enzyme assisted signal amplification method combined biosensor
by Zhang, Kai and Wang, Ke and Wang, Jiaying and Huang, Yue and Zhu, Xue and Xie, Minhao
Talanta, ISSN 0039-9140, 11/2018, Volume 189, pp. 122 - 128
Highly sensitive detection of proteins is essential to biomedical research as well as clinical diagnosis. However, usual detecting methods are complicated... 
Molecular machine | Amplification method | Cytokine | Malachite green | Cell lysates | GOLD NANOPARTICLES | CHEMISTRY, ANALYTICAL | ROLLING CIRCLE AMPLIFICATION | ULTRASENSITIVE DETECTION | APTASENSOR ARRAY | VISUAL DETECTION | STRAND DISPLACEMENT | LABEL-FREE | MOLECULAR BEACON | ELECTROCHEMILUMINESCENCE BIOSENSOR | Blood Chemical Analysis - methods | DNA - genetics | Deoxyribonuclease I - metabolism | Limit of Detection | Base Sequence | Humans | Oligonucleotide Probes - genetics | Biosensing Techniques - methods | DNA - metabolism | Interferon-gamma - metabolism | Interferon-gamma - blood | Oligonucleotide Probes - metabolism | Enzymes | Nucleases | Analysis | DNA | Detectors | Genetic research | Fluorescence | Interferon | Biological response modifiers | Methods
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69. Full Text A versatile label-free and signal-on electrochemical biosensing platform based on triplex-forming oligonucleotide probe
by Wang, Xiuzhong and Jiang, Aiwen and Hou, Ting and Li, Feng
Analytica Chimica Acta, ISSN 0003-2670, 08/2015, Volume 890, pp. 91 - 97
Nucleic acid and protein assays are very important in modern life sciences, and the recently developed triplex-forming oligonucleotide probes provide a unique... 
Electrochemical biosensing | Molecular beacon | Triplex formation | Label-free | CHEMISTRY, ANALYTICAL | BEACONS | STRATEGY | BLOOD-SERUM | SENSOR | PSEUDOKNOT | HELIX MOLECULAR SWITCH | NUCLEIC-ACIDS | AMPLIFICATION | ELECTRODE | COLORIMETRIC DNA DETECTION | Limit of Detection | Nucleic Acid Hybridization | Electrochemical Techniques | Humans | Aptamers, Nucleotide - chemistry | RNA, Viral - analysis | HIV-1 - genetics | Oligonucleotide Probes - metabolism | Potassium - chemistry | Electrodes | Biosensing Techniques | Hemin - chemistry | G-Quadruplexes | Oligonucleotide Probes - chemistry | HIV testing | Chemical properties | Investigations | Electric properties
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70. Full Text Avoiding false-positive signals with nuclease-vulnerable molecular beacons in single living cells
by Chen, Antony K and Behlke, Mark A and Tsourkas, Andrew
Nucleic Acids Research, ISSN 0305-1048, 8/2007, Volume 35, Issue 16, pp. e105 - e105
There have been a growing number of studies where molecular beacons (MBs) are used to image RNA expression in living cells; however, the ability to make... 
CARCINOMA CELLS | MESSENGER-RNA EXPRESSION | BIOCHEMISTRY & MOLECULAR BIOLOGY | GENE-EXPRESSION | ESTROGEN | STOCHASTICITY | HYBRIDIZATION | TRANSCRIPTIONAL REGULATION | RESISTANT BREAST-CANCER | C-MYC ONCOGENE | IN-SITU | Cytoplasm - chemistry | Fluorescent Dyes - chemistry | Transcription, Genetic - drug effects | Antineoplastic Agents, Hormonal - pharmacology | Humans | Fluorescent Dyes - metabolism | RNA, Messenger - analysis | Endonucleases - metabolism | RNA, Messenger - metabolism | Proto-Oncogene Proteins c-myc - metabolism | Oligonucleotide Probes - metabolism | Artifacts | Proteins - metabolism | Quantum Dots | Tamoxifen - pharmacology | Cell Line, Tumor | Cell Nucleus - chemistry | Proto-Oncogene Proteins c-myc - genetics | Oligonucleotide Probes - chemistry | Exonucleases - metabolism | Microscopy, Fluorescence | Methods Online
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71. Full Text A Broadly Applicable Assay for Rapidly and Accurately Quantifying DNA Surface Coverage on Diverse Particles
by Yu, Haixiang and Xu, Xiaowen and Liang, Pingping and Loh, Kang Yong and Guntupalli, Bhargav and Roncancio, Daniel and Xiao, Yi
Bioconjugate Chemistry, ISSN 1043-1802, 04/2017, Volume 28, Issue 4, pp. 933 - 943
DNA-modified particles are used extensively for applications in sensing, material science, and molecular biology. The performance of such DNA-modified... 
GOLD NANOPARTICLES | SINGLE | EXONUCLEASE-III | BIOCHEMISTRY & MOLECULAR BIOLOGY | BIOCHEMICAL RESEARCH METHODS | CHEMISTRY, ORGANIC | RESONANCE ENERGY-TRANSFER | HYBRIDIZATION | CHEMISTRY, MULTIDISCIPLINARY | NUCLEIC-ACIDS | OLIGONUCLEOTIDES | PROBES | ENDONUCLEASE | AGGREGATION | Gold - chemistry | Nucleic Acid Hybridization - methods | Fluorescent Dyes - chemistry | DNA Probes - analysis | Metal Nanoparticles - chemistry | Fluorescent Dyes - metabolism | Immobilized Nucleic Acids - analysis | Static Electricity | Immobilized Nucleic Acids - metabolism | Base Sequence | Surface Properties | DNA Probes - metabolism | Exodeoxyribonucleases - metabolism
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72. Full Text Detection and cell sorting of Pseudonocardia species by fluorescence in situ hybridization and flow cytometry using 16S rRNA-targeted oligonucleotide probes
by Li, Mengyan and Yang, Yu and He, Ya and Mathieu, Jacques and Yu, Cong and Li, Qilin and Alvarez, Pedro J. J
Applied Microbiology and Biotechnology, ISSN 0175-7598, 4/2018, Volume 102, Issue 7, pp. 3375 - 3386
Pseudonocardia spp. are receiving increasing attention due to their ability to biodegrade recalcitrant cyclic ether pollutants (e.g., 1,4-dioxane and... 
Life Sciences | Biotechnology | Flow cytometry | Pseudonocardia | Microbiology | Microbial Genetics and Genomics | Fluorescence in situ hybridization | Tetrahydrofuran | 1,4-Dioxane | ANT-ASSOCIATED PSEUDONOCARDIA | BACTERIA | EMENDED DESCRIPTION | IDENTIFICATION | ACTINOMYCETE | 1,4-DIOXANE BIODEGRADATION | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | DEGRADATION | SP-NOV | GENERA PSEUDONOCARDIA | STRAIN | Microbiological Techniques - methods | Flow Cytometry | Actinomycetales - genetics | Oligonucleotide Probes - genetics | RNA, Ribosomal, 16S - genetics | In Situ Hybridization, Fluorescence | Oligonucleotide Probes - metabolism | Actinomycetales - isolation & purification | Microbiological research | RNA | Oligonucleotides | Physiological aspects | Genetic aspects | Actinomycetes | Research | Hybridization | Methods | Symbiosis | Biodegradation | Cell culture | Microbial activity | rRNA 16S | Separation | Pollution control | Cytology | Fluorescence | Cultures | Consortia | Cytometry | Microorganisms | Antibiotics | Ecological niches | E coli | Relative abundance | Pollutants | Niches
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73. Full Text In vitro Analysis of DNA-Protein Interactions by Proximity Ligation
by Sigrun M. Gustafsdottir and Joerg Schlingemann and Alvaro Rada-Iglesias and Edith Schallmeiner and Masood Kamali-Moghaddam and Claes Wadelius and Ulf Landegren and Medicinska fakulteten and Medicinska och farmaceutiska vetenskapsområdet and Institutionen för genetik och patologi and Uppsala universitet
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 2/2007, Volume 104, Issue 9, pp. 3067 - 3072
Protein-binding DNA sequence elements encode a variety of regulated functions of genomes. Information about such elements is currently in a state of rapid... 
Polymerase chain reaction | Transcription factors | Ligation | DNA probes | DNA | Oligonucleotide probes | Oligonucleotides | Antibodies | DNA binding proteins | Binding sites | ChIP | Proximity ligation assay | EMSA | TRANSCRIPTION FACTORS | CELLS | GENOME-WIDE LOCATION | CHROMATIN IMMUNOPRECIPITATION | MULTIDISCIPLINARY SCIENCES | proximity ligation assay | KAPPA-B | SACCHAROMYCES-CEREVISIAE | P53 | FACTOR BINDING-SITES | PROMOTER REGION | A-IV GENE | DNA-Binding Proteins - metabolism | Oligonucleotides - genetics | Oligonucleotides - metabolism | Molecular Probes - metabolism | Polymerase Chain Reaction | Models, Molecular | Electrophoretic Mobility Shift Assay | DNA - metabolism | Genetic Techniques | Molecular Probes - genetics | Usage | Research | Biological assay | Analysis | Protein binding | Biological Sciences | DNA/metabolism | Models; Molecular | Medical and Health Sciences | Medicin och hälsovetenskap | MEDICIN | Oligonucleotides/genetics/metabolism | MEDICINE | DNA-Binding Proteins/metabolism | Molecular Probes/genetics/metabolism
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74. Full Text Electrochemical DNA sensor for specific detection of picomolar Hg(II) based on exonuclease III-assisted recycling signal amplification
by Gan, Xiaorong and Zhao, Huimin and Chen, Shuo and Quan, Xie
Analyst, ISSN 0003-2654, 03/2015, Volume 140, Issue 6, pp. 2029 - 2036
An ultrasensitive methodology was successfully developed for the quantitative detection of picomolar Hg2+ based on the combination of thymine-Hg2+-thymine... 
GOLD NANOPARTICLES | CHEMISTRY, ANALYTICAL | ELECTRON-TRANSFER | EMISSION-SPECTROSCOPY | QUANTITATION | HIGHLY SENSITIVE DETECTION | HYBRIDIZATION | BIOSENSOR | MERCURY ION HG2 | SELECTIVE DETECTION | OLIGONUCLEOTIDES | Gold - chemistry | Thymine - chemistry | Limit of Detection | Mercury - analysis | DNA, Single-Stranded - metabolism | Environmental Monitoring - methods | Drinking Water - analysis | DNA Probes - chemistry | Water Pollutants, Chemical - analysis | DNA, Single-Stranded - chemistry | Immobilized Nucleic Acids - metabolism | Rivers - chemistry | DNA Probes - metabolism | Exodeoxyribonucleases - metabolism | Biosensing Techniques - methods | Electrochemical Techniques - methods | Immobilized Nucleic Acids - chemistry | Thymine - metabolism
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75. Full Text Simultaneous analysis of microbial identity and function using NanoSIMS
by Li, Tianlun and Wu, Ting‐Di and Mazéas, Laurent and Toffin, Laurent and Guerquin‐Kern, Jean‐Luc and Leblon, Gérard and Bouchez, Théodore
Environmental Microbiology, ISSN 1462-2912, 03/2008, Volume 10, Issue 3, pp. 580 - 588
Summary Identifying the function of uncultured microbes in their environments today remains one of the main challenges for microbial ecologists. In this... 
COMMUNITY | IN-SITU HYBRIDIZATION | POPULATIONS | ECOLOGY | MICROBIOLOGY | MICROAUTORADIOGRAPHY | IDENTIFICATION | MICROSCOPY | CELL | TOOL | In Situ Hybridization | Environmental Microbiology | Clinical Laboratory Techniques | Oligonucleotide Probes - genetics | Carbon Isotopes | Microbiological Techniques | Bacterial Typing Techniques - methods | Oligonucleotide Probes - metabolism | Life Sciences | Oligonucleotide Probes | Microbiology and Parasitology | Bacterial Typing Techniques | Biochemistry, Molecular Biology | Laboratory Techniques and Procedures
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