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NATURE REVIEWS GENETICS, ISSN 1471-0056, 11/2015, Volume 16, Issue 11, pp. 627 - 640
The discovery of genetic variation and the assembly of genome sequences are both inextricably linked to advances in DNA-sequencing technology. Short-read... 
REVEALS INSIGHTS | INVERSION POLYMORPHISM | GENETICS & HEREDITY | SEGMENTAL DUPLICATIONS | 15Q13.3 MICRODELETION | LOCAL ALIGNMENT | HEXANUCLEOTIDE REPEAT | PAIRED-END | POPULATION-SCALE | COMMON INVERSION | COPY-NUMBER VARIATION
Journal Article
by Zehir, Ahmet and Benayed, Ryma and Shah, Ronak H and Syed, Aijazuddin and Middha, Sumit and Kim, Hyunjae R and Srinivasan, Preethi and Gao, Jianjiong and Chakravarty, Debyani and Devlin, Sean M and Hellmann, Matthew D and Barron, David A and Schram, Alison M and Hameed, Meera and Dogan, Snjezana and Ross, Dara S and Hechtman, Jaclyn F and DeLair, Deborah F and Yao, JinJuan and Mandelker, Diana L and Cheng, Donavan T and Chandramohan, Raghu and Mohanty, Abhinita S and Ptashkin, Ryan N and Jayakumaran, Gowtham and Prasad, Meera and Syed, Mustafa H and Rema, Anoop Balakrishnan and Liu, Zhen Y and Nafa, Khedoudja and Borsu, Laetitia and Sadowska, Justyna and Casanova, Jacklyn and Bacares, Ruben and Kiecka, Iwona J and Razumova, Anna and Son, Julie B and Stewart, Lisa and Baldi, Tessara and Mullaney, Kerry A and Al-Ahmadie, Hikmat and Vakiani, Efsevia and Abeshouse, Adam A and Penson, Alexander V and Jonsson, Philip and Camacho, Niedzica and Chang, Matthew T and Won, Helen H and Gross, Benjamin E and Kundra, Ritika and Heins, Zachary J and Chen, Hsiao-Wei and Phillips, Sarah and Zhang, Hongxin and Wang, Jiaojiao and Ochoa, Angelica and Wills, Jonathan and Eubank, Michael and Thomas, Stacy B and Gardos, Stuart M and Reales, Dalicia N and Galle, Jesse and Durany, Robert and Cambria, Roy and Abida, Wassim and Cercek, Andrea and Feldman, Darren R and Gounder, Mrinal M and Hakimi, A. Ari and Harding, James J and Iyer, Gopa and Janjigian, Yelena Y and Jordan, Emmet J and Kelly, Ciara M and Lowery, Maeve A and Morris, Luc G. T and Omuro, Antonio M and Raj, Nitya and Razavi, Pedram and Shoushtari, Alexander N and Shukla, Neerav and Soumerai, Tara E and Varghese, Anna M and Yaeger, Rona and Coleman, Jonathan and Bochner, Bernard and Riely, Gregory J and Saltz, Leonard B and Scher, Howard I and Sabbatini, Paul J and Robson, Mark E and Klimstra, David S and Taylor, Barry S and Baselga, Jose and Schultz, Nikolaus and Hyman, David M and Arcila, Maria E and Solit, David B and Ladanyi, Marc and Berger, Michael F
Nature Medicine, ISSN 1078-8956, 06/2017, Volume 23, Issue 6, pp. 703 - 713
Journal Article
Genome Biology, ISSN 1474-7596, 06/2014, Volume 15, Issue 6, pp. R84 - R84
Journal Article
Bioinformatics, ISSN 1367-4803, 02/2019, Volume 35, Issue 3, pp. 515 - 517
Abstract Summary Reliably identifying genomic rearrangements and interpreting their impact is a key step in understanding their role in human cancers and... 
BIOTECHNOLOGY & APPLIED MICROBIOLOGY | PAIRED-END | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY
Journal Article
Cancer Discovery, ISSN 2159-8274, 09/2018, Volume 8, Issue 9, pp. 1112 - 1129
Pancreatic cancer is the most lethal common solid malignancy. Systemic therapies are often ineffective, and predictive biomarkers to guide treatment are... 
TRIAL | MULTICENTER | ONCOLOGY | DUCTAL ADENOCARCINOMA | SEQUENCE DATA | SUBTYPES | TUMOR | TRANSLATION | STRUCTURAL VARIATION | PAIRED-END | GEMCITABINE | Index Medicus | Pancreatic Cancer | Pharmacotyping | Organoids | Pharmacotranscriptomics | Common Responders | Precision Medicine
Journal Article
Bioinformatics, ISSN 1367-4803, 04/2016, Volume 32, Issue 8, pp. 1220 - 1222
We describe Manta, a method to discover structural variants and indels from next generation sequencing data. Manta is optimized for rapid germline and somatic... 
BIOTECHNOLOGY & APPLIED MICROBIOLOGY | PAIRED-END | DISCOVERY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | Neoplasms - genetics | DNA, Neoplasm | Genomics | Humans | High-Throughput Nucleotide Sequencing | Software | Genome | INDEL Mutation | Index Medicus | Freeware | Databases | Insertion | Licenses | Source code | Sequencing | Bioinformatics | Standards
Journal Article
Fish and Shellfish Immunology, ISSN 1050-4648, 06/2015, Volume 44, Issue 2, pp. 420 - 429
Common carp (Cyprinus carpio) is one of the most important aquacultured species of the family Cyprinidae, and breeding this species for disease resistance is... 
Characterization | Spleen | Common carp (Cyprinus carpio) | Illumina paired-end sequencing | Transcriptome
Journal Article
PLoS ONE, ISSN 1932-6203, 08/2011, Volume 6, Issue 8
Journal Article
MODERN PATHOLOGY, ISSN 0893-3952, 04/2018, Volume 31, Issue 4, pp. 660 - 673
Adenomatoid tumors are the most common neoplasm of the epididymis, and histologically similar adenomatoid tumors also commonly arise in the uterus and... 
MED12 | MENINGIOMAS | SETD2 | UTERUS | GENES | GENOMIC ANALYSIS | PATIENT | FUSIONS | PATHOLOGY | TRAF7 MUTATIONS | PAIRED-END
Journal Article
BMC Bioinformatics, ISSN 1471-2105, 09/2013, Volume 14, Issue 11, pp. S1 - S1
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 04/2019, Volume 47, Issue 7, pp. e38 - e38
Abstract Motivation Cancer is a complex disease that involves rapidly evolving cells, often forming multiple distinct clones. In order to effectively... 
OVEREXPRESSION | PLASMA | GPI TRANSAMIDASE | BIOCHEMISTRY & MOLECULAR BIOLOGY | MUTATIONS | ALGORITHMS | PAIRED-END | CARCINOMA | INSERTIONS | DISCOVERY | PIG-U | Methods Online
Journal Article
Bioinformatics, ISSN 1367-4803, 10/2018, Volume 34, Issue 20, pp. 3437 - 3445
Abstract Motivation Pairwise sequence alignment is undoubtedly a central tool in many bioinformatics analyses. In this paper, we present a generically... 
SINGLE | SEARCH | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | LIBRARY | PAIRED-END | SPEED-UP
Journal Article
Nature Genetics, ISSN 1061-4036, 02/2014, Volume 46, Issue 2, pp. 176 - 181
Follicular lymphoma is an incurable malignancy(1), with transformation to an aggressive subtype representing a critical event during disease progression. Here... 
TRANSFORMATION | READ ALIGNMENT | SOMATIC HYPERMUTATION | DNA | GENETICS & HEREDITY | HODGKIN LYMPHOMA | GLOBULAR DOMAIN | PAIRED-END | CELL | EXPRESSION | DISCOVERY | Polycomb Repressive Complex 2 - genetics | Humans | Molecular Sequence Data | Phylogeny | CREB-Binding Protein - genetics | Lymphoma, Follicular - genetics | Cell Transformation, Neoplastic - genetics | Base Sequence | Trans-Activators - genetics | Tumor Necrosis Factor alpha-Induced Protein 3 | Lymphoma, Follicular - physiopathology | Genomics - methods | Neoplasm Proteins - genetics | Nuclear Proteins - genetics | Intracellular Signaling Peptides and Proteins - genetics | Molecular Sequence Annotation | Myeloid Differentiation Factor 88 - genetics | DNA-Binding Proteins - genetics | Mutation - genetics | Sequence Analysis, DNA | Disease Progression | Enhancer of Zeste Homolog 2 Protein | Exome - genetics | Histones - genetics | Mutagenesis | Polymorphism, Single Nucleotide - genetics | High-Throughput Nucleotide Sequencing | Cluster Analysis | Cohort Studies | Gene mutations | Development and progression | Genetic aspects | Non-Hodgkin's lymphomas | Research | Health aspects | Risk factors | Medical research | Enzymes | Scholarships & fellowships | Lymphomas | Genomes | Mutation | Genetic testing | Gene expression | Deoxyribonucleic acid--DNA | Cancer | Index Medicus
Journal Article
by Jones, David T. W and Hutter, Barbara and Jäger, Natalie and Korshunov, Aney and Kool, Marcel and Warnatz, Hans-Jörg and Zichner, Thomas and Lambert, Sally R and Ryzhova, Marina and Quang, Dong Anh Khuong and Fontebasso, Adam M and Stütz, Aian M and Hutter, Sonja and Zuckermann, Marc and Sturm, Dominik and Gronych, Jan and Lasitschka, Bärbel and Schmidt, Sabine and Seker-Cin, Huriye and Witt, Henik and Sultan, Marc and Ralser, Meryem and Northcott, Paul A and Hovestadt, Volker and Bender, Sebastian and Pfaff, Elke and Stark, Sebastian and Faury, Damien and Schwartzentruber, Jeremy and Majewski, Jacek and Weber, Ursula D and Zapatka, Marc and Raeder, Benjamin and Schlesner, Matthias and Worth, Catherine L and Bartholomae, Cynthia C and von Kalle, Christof and Imbusch, Charles D and Radomski, Sylwester and Lawerenz, Chris and van Sluis, Peter and Koster, Jan and Volckmann, Richard and Versteeg, Rogier and Lehrach, Hans and Monoranu, Camelia and Winkler, Beate and Unterberg, Aneas and Herold-Mende, Christel and Milde, Till and Kulozik, Aneas E and Ebinger, Martin and Schuhmann, Martin U and Cho, Yoon-Jae and Pomeroy, Scott L and von Deimling, Aneas and Witt, Olaf and Taylor, Michael D and Wolf, Stephan and Karajannis, Matthias A and Eberhart, Charles G and Scheurlen, Wolfram and Hasselblatt, Martin and Ligon, Keith L and Kieran, Mark W and Korbel, Jan O and Yaspo, Marie-Laure and Brors, Benedikt and Felsberg, Jörg and Reifenberger, Guido and Collins, V. Peter and Jabado, Nada and Eils, Roland and Lichter, Peter and Pfister, Stefan M and Int Canc Genome Consortium and International Cancer Genome Consortium PedBrain Tumor Project and the International Cancer Genome Consortium PedBrain Tumor Project
Nature genetics, ISSN 1061-4036, 2013, Volume 45, Issue 8, pp. 927 - 932
Journal Article