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Methods in molecular biology (Clifton, N.J.), ISSN 1064-3745, 2019, Volume 1897, pp. 269 - 278
Formalin-fixed, paraffin-embedded tissue (FFPE) still plays an important role in biobanking, since it is comparatively easy to obtain and store in comparison... 
FFPE | Paraffin sections | Formalin-fixed | Microtomy | Paraffin Embedding - methods | Biological Specimen Banks | Humans | Proteomics | In Situ Hybridization, Fluorescence | Fixatives - chemistry | Tissue Fixation
Journal Article
Methods in Molecular Biology, ISSN 1064-3745, 2018, Volume 1774, pp. 367 - 378
Planarians are flatworms with almost unlimited regenerative abilities, which make them an excellent model for stem cell-based regeneration. To study the... 
Immunohistochemistry | Planarian | Paraffin histological sections | Schmidtea mediterranea | Antibody | Immunohistochemistry - methods | Paraffin Embedding - methods | Stem Cells - cytology | Animals | Planarians - cytology | Regeneration - physiology
Journal Article
Microscopy Research and Technique, ISSN 1059-910X, 09/2019, Volume 82, Issue 9, pp. 1575 - 1583
The optical disector, a three‐dimensional counting frame or probe in stereology, is often positioned in the middle (depth) of a thick section for unbiased... 
section deformation | methacrylate sections | paraffin sections | tissue shrinkage | number estimation | stereology | optical disector | section compression | SPERMATOGENESIS | NUMBER | UNBIASED STEREOLOGICAL ESTIMATION | ANATOMY & MORPHOLOGY | COMPRESSION | MICROSCOPY | DISECTOR | SPINAL DORSAL-HORN | LOST CAPS | AREA | BIOLOGY | FRACTIONATOR | Paraffins | Thickness | Deformation | Rodents | Stereology | Epithelium | Paraffin | Counting
Journal Article
PLOS ONE, ISSN 1932-6203, 02/2019, Volume 14, Issue 2, p. e0212031
We describe the use of a ligation-based targeted whole transcriptome expression profiling assay, TempO-Seq, to profile formalin-fixed paraffin-embedded (FFPE)... 
MULTIDISCIPLINARY SCIENCES | FIXATION | Research | RNA | Gene expression | Genes | Formaldehyde | Profiling | Liver | Genomes | Paraffin | Tissues | Assaying | Scraping | Consortia | Archives & records | Paraffins | Histology | Ribonucleic acid--RNA | Polymerase chain reaction | Artifacts | Sensitivity | Fixation | Equivalence | Lungs | Reproducibility | Correlation analysis | Proteomics | Molecular biology | Methods | Cancer | Ribonucleic acid
Journal Article
British Journal of Dermatology, ISSN 0007-0963, 08/2019, Volume 181, Issue 2, pp. 399 - 400
Journal Article
Methods in Molecular Biology, ISSN 1064-3745, 2017, Volume 1541, pp. 119 - 125
Formalin-fixed paraffin-embedded (FFPE) tissues are typically the specimens available for FISH analysis of solid tissues, particularly of tumor specimens.... 
Probes | Fluorescence in situ hybridization | Formalin-fixed paraffin-embedded tissues | Molecular Probes | Paraffin Embedding | In Situ Hybridization | Humans | Tissue Fixation | In Situ Hybridization, Fluorescence - methods | Formaldehyde | Microscopy, Fluorescence
Journal Article
Methods in Molecular Biology, ISSN 1064-3745, 2018, Volume 1774, pp. 393 - 404
RNA in situ hybridization techniques are an important tool for the study of gene expression patterns in freshwater planarians. Here I describe a RNA in situ... 
Gene expression patterns | Neoblast | Planaria | In situ hybridization | Paraffin sections | Haptens - genetics | Paraffin Embedding - methods | Animals | Gene Expression - genetics | Paraffin - chemistry | RNA Probes - genetics | In Situ Hybridization - methods | Planarians - genetics | Coloring Agents - chemistry | RNA - genetics
Journal Article
Angewandte Chemie International Edition, ISSN 1433-7851, 10/2019, Volume 58, Issue 43, pp. 15259 - 15262
We have developed a method for spatially resolved genetic analysis of formalin‐fixed paraffin‐embedded (FFPE) cell block and tissue sections. This method... 
cancer | gene sequencing | tissue sections | isotachophoresis | tumor heterogeneity | Genetic research | Nucleic acids | Gene mutations | Analysis | Formaldehyde | Paraffins | Confinement | Purification | Invasiveness | Electrokinetics | Tissue analysis | Paraffin | Genotyping | Genetic analysis | Lysis | Breast | Mutation | Sampling
Journal Article
Methods in Molecular Biology, ISSN 1064-3745, 2016, Volume 1457, pp. 269 - 274
Immunohistochemistry (IHC) is an efficient technique to detect cellular localizations of the proteins in paraffin-embedded tissues. It allows specific proteins... 
Immunohistochemistry | Bouin’s fixative | Biotinylated antibodies | Mouse ovary | Paraffin sections | Immunohistochemistry - methods | Paraffin Embedding | Animals | Histocytological Preparation Techniques | Female | Mice | Ovary - metabolism
Journal Article
Scientific Reports, ISSN 2045-2322, 10/2016, Volume 6, Issue 1, p. 34949
Although re-sequencing of gene panels and mRNA expression profiling are now firmly established in clinical laboratories, in-depth proteome analysis has... 
BREAST-CANCER | GENE | PEPTIDE IDENTIFICATION | MULTIDISCIPLINARY SCIENCES | FOLATE RECEPTOR | DISEASE | COLON | EXPRESSION PROFILES | CLEAR-CELL CARCINOMA | EPITHELIAL OVARIAN-CANCER | MASS-SPECTROMETRY | Protein arrays | Translation | DNA microarrays | Laboratories | Genes | Proteomics | Genomes | Paraffin | Gene expression | Formaldehyde | Ovarian cancer | Tumors
Journal Article