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Nucleic Acids Research, ISSN 0305-1048, 7/2011, Volume 39, Issue suppl_2, pp. W29 - W37
HMMER is a software suite for protein sequence similarity searches using probabilistic methods. Previously, HMMER has mainly been available only as a... 
DATABASE | SERVICES | GENOMES | BIOCHEMISTRY & MOLECULAR BIOLOGY | PFAM | ACID SUBSTITUTION MATRICES | TOOLS | Sequence Alignment - methods | Sequence Analysis, Protein | Software | Internet
Journal Article
Marine Genomics, ISSN 1874-7787, 07/2018, Volume 40, pp. 9 - 12
Stony corals from the genus are widely distributed, important reef-builders and have become increasingly utilized for investigating links between genetics and... 
DATABASE | CORALS | PFAM | GENETICS & HEREDITY
Journal Article
Journal of Molecular Biology, ISSN 0022-2836, 06/2019, Volume 431, Issue 13, pp. 2442 - 2448
At present, about half of the protein domain families lack a structural representative. However, in the last decade, predicting contact maps and using these to... 
structure prediction | folding pipeline | contact maps | Pfam | PROTEIN-STRUCTURE | BIOCHEMISTRY & MOLECULAR BIOLOGY | CONTACT PREDICTIONS | IDENTIFICATION | KNOTS | Databases
Journal Article
NUCLEIC ACIDS RESEARCH, ISSN 0305-1048, 01/2019, Volume 47, Issue D1, pp. D475 - D481
The SCOPe (Structural Classification of Proteinsextended, https://scop.berkeley.edu) database hierarchically classifies domains from the majority of proteins... 
ASTRAL COMPENDIUM | IMPACT | RNA | PROTEIN-STRUCTURE | CRYSTAL-STRUCTURE | BIOCHEMISTRY & MOLECULAR BIOLOGY | SPLICEOSOME | PFAM | CRYO-EM STRUCTURE
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 01/2019, Volume 47, Issue 2, pp. 582 - 593
Abstract Domains are fundamental subunits of proteins, and while they play major roles in facilitating protein-DNA, protein-RNA and other protein-ligand... 
CENSUS | DESIGN | DATABASE | RECOGNITION | ANNOTATION | BIOCHEMISTRY & MOLECULAR BIOLOGY | PFAM | CLASSIFICATION | CANCER | FAMILY | PREDICTION | Data Resources and Analyses
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 01/2013, Volume 41, Issue 1, pp. D483 - D489
The Structure Integration with Function, Taxonomy and Sequences resource (SIFTS; http://pdbe.org/sifts) is a close collaboration between the Protein Data Bank... 
EUROPE | DOMAIN | BIOINFORMATICS | DATABASE | ARCHIVE | BIOCHEMISTRY & MOLECULAR BIOLOGY | BIOLOGY | PFAM | PROTEIN DATA-BANK | FAMILY | PDB | Proteins - physiology | Sequence Analysis, Protein | Databases, Protein | Molecular Sequence Annotation | Systems Integration | Protein Conformation | Proteins - classification | Internet | Proteins - chemistry
Journal Article
Journal of Microbiology and Biotechnology, ISSN 1017-7825, 2017, Volume 27, Issue 9, pp. 1670 - 1680
Lignocellulose, composed mostly of cellulose, hemicellulose, and lignin generated through secondary growth of woody plant, is considered as promising resources... 
16S rRNA | Lignocellulose degradation | CAZy | metagenome | Bija forest | Pfam
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 2015, Volume 43, Issue 3, pp. 1370 - 1379
Journal Article
Bioinformatics, ISSN 1367-4803, 09/2018, Volume 34, Issue 17, pp. 2997 - 3003
Abstract Motivation The ECOD database classifies protein domains based on their evolutionary relationships, considering both remote and close homology. The... 
EVOLUTIONARY | ALIGNMENT | PROMALS3D | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | MULTIPLE PROTEIN-SEQUENCE | PFAM | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | CLASSIFICATION | GENERATION | Original Papers
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 2/2009, Volume 37, Issue 3, pp. 858 - 865
In the growing field of genomics, multiple alignment programs are confronted with ever increasing amounts of data. To address this growing issue we have... 
ACCURATE | BENCHMARK | FAMILIES | BIOCHEMISTRY & MOLECULAR BIOLOGY | ALGORITHM | PFAM | IMPROVEMENT | T-COFFEE | TOOLS | Sequence Alignment - methods | Sequence Analysis, Protein | Reproducibility of Results | Software | Sequence Analysis, RNA | Time Factors | Computational Biology | Biochemistry | Naturvetenskap | biokemi | Natural Sciences | biofysik | Biophysics
Journal Article