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2009, 2nd ed., ISBN 0521730716, xxvi, 723
The Phylogenetic Handbook is a broad, hands on guide to theory and practice of nucleotide and protein phylogenetic analysis. This second edition includes six... 
models | genetics | amino acid sequence | methods | DNA | proteins | cladistic analysis | data processing | phylogeny | sequence analysis | handbooks, manuals, etc | Phylogeny
Book
Methods in Ecology and Evolution, ISSN 2041-210X, 12/2012, Volume 3, Issue 6, pp. 1084 - 1092
1.  The R package ‘diversitree’ contains a number of classical and contemporary comparative phylogenetic methods. Key included methods are BiSSE (binary state... 
macroevolution | comparative methods | birth–death process | extinction | speciation | Macroevolution | Extinction | Birth-death process | Comparative methods | Speciation | ADAPTIVE RADIATION | LIKELIHOOD APPROACH | birth-death process | INFERENCE | CHARACTERS | EVOLUTION | TREES | EQUILIBRIUM | ECOLOGY | EXTINCTION RATES | TRAITS | Phylogenetics | Evolution | Diversification | Methods
Journal Article
Bioinformatics, ISSN 1367-4803, 02/2011, Volume 27, Issue 4, pp. 592 - 593
phangorn is a package for phylogenetic reconstruction and analysis in the R language. Previously it was only possible to estimate phylogenetic trees with... 
MAXIMUM-LIKELIHOOD | EVOLUTION | MODEL | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | Computational Biology - methods | Likelihood Functions | Models, Genetic | Software | Phylogeny | Index Medicus | Applications Note
Journal Article
2015, ISBN 9781107019652, xii, 249 pages
"What are the models used in phylogenetic analysis and what exactly is involved in Bayesian evolutionary analysis using Markov chain Monte Carlo (MCMC)... 
Bayesian statistical decision theory | bayesian analysis | Cladistic analysis | Informatique | Data processing | phylogenetics | Théorie de la décision bayésienne | Analyse cladistique
Book
PeerJ, ISSN 2167-8359, 2019, Volume 2019, Issue 1, pp. e6124 - e6124
Loblolly pine (Pinus taeda L.) is one of the most important species for oleoresin (a mixture of terpenoids) in South China. The high oleoresin content of... 
Phylogenetic analysis | Transcriptome analysis | Terpenoid biosynthesis | Conserved motifs | Loblolly pine (Pinus taeda L.) | CYTOCHROME-P450 | RESIN ACID BIOSYNTHESIS | SYNTHASE GENE | MULTIDISCIPLINARY SCIENCES | DEHYDROGENASE | EVOLUTION | METABOLISM | OXIDASE | CLONING | ENZYMES | MEVALONATE-INDEPENDENT PATHWAY
Journal Article
11/2014, Volume 46, Issue 11, 7
Book Chapter
Molecular Biology and Evolution, ISSN 0737-4038, 12/2013, Volume 30, Issue 12, pp. 2725 - 2729
We announce the release of an advanced version of the Molecular Evolutionary Genetics Analysis (MEGA) software, which currently contains facilities for... 
software | relaxed clocks | phylogeny | EVOLUTIONARY BIOLOGY | BIOCHEMISTRY & MOLECULAR BIOLOGY | GENETICS & HEREDITY | DIVERGENCE TIMES | User-Computer Interface | Algorithms | Databases, Genetic | Software | Internet | Phylogeny | Evolution, Molecular | Phylogenetics | User interface | Index Medicus | Resources
Journal Article
The Plant Cell, ISSN 1040-4651, 7/2003, Volume 15, Issue 7, pp. 1538 - 1551
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