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Journal of Physics Condensed Matter, ISSN 0953-8984, 09/2015, Volume 27, Issue 35, p. 354101
Journal Article
Chemical science, ISSN 2041-6520, 01/2018, Volume 9, Issue 4, pp. 979 - 984
Here we report a robust and sensitive DNA nanostructure-based electrochemical (E-nanoDNA) sensor that utilizes tetrahedral DNA nanostructures (TDNs) as an... 
Journal Article
RNA, ISSN 1355-8382, 06/1999, Volume 5, Issue 6, pp. 720 - 727
The crystal structure of a genomic hepatitis delta virus (HDV) ribozyme 3' cleavage product predicts the existence of a 2 bp duplex, P1.1, that had not been... 
pseudoknot
Journal Article
Analytical Chemistry, ISSN 0003-2700, 03/2014, Volume 86, Issue 5, pp. 2285 - 2288
Because of the short size and low abundance of microRNAs, it is challenging to develop fast, inexpensive, and simple biosensors to detect them. In this work,... 
REAGENTLESS | SEQUENCE-SPECIFIC DETECTION | LABEL-FREE | CHEMISTRY, ANALYTICAL | ELECTROCHEMICAL BIOSENSORS | BLOOD-SERUM | PSEUDOKNOT | DNA - chemistry | Nanostructures | Nucleic Acid Conformation | MicroRNAs - analysis | Biosensing Techniques
Journal Article
RNA Biology, ISSN 1547-6286, 2011, Volume 8, Issue 1
Journal Article
Journal of Theoretical Biology, ISSN 0022-5193, 10/2018, Volume 455, pp. 131 - 139
Journal Article
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 4/2013, Volume 110, Issue 14, pp. 5498 - 5503
Journal Article
Biochemistry, ISSN 0006-2960, 02/2019, Volume 58, Issue 8, pp. 1167 - 1178
RNA signals located downstream of stop codons in eukaryotic mRNAs can stimulate high levels of translational readthrough by the ribosome, thereby giving rise... 
TRANSLATIONAL TERMINATION EFFICIENCY | NUCLEOTIDES | IMPACT | EVOLUTION | SEQUENCES | MECHANISM | DOWNSTREAM | BIOCHEMISTRY & MOLECULAR BIOLOGY | READ-THROUGH | PSEUDOKNOT | FUSIONS
Journal Article
RNA, ISSN 1355-8382, 05/2016, Volume 22, Issue 5, pp. 750 - 763
Journal Article
Methods (San Diego, Calif.), ISSN 1046-2023, 07/2019
Clustered regularly interspaced short palindromic repeats (CRISPR) and CRISPR-associated (Cas) proteins provide an inheritable and adaptive immune system... 
Journal Article
Chemical Science, ISSN 2041-6520, 2018, Volume 9, Issue 4, pp. 979 - 984
Here we report a robust and sensitive DNA nanostructure-based electrochemical (E-nanoDNA) sensor that utilizes tetrahedral DNA nanostructures (TDNs) as an... 
REAGENTLESS | PLATFORM | LABEL-FREE | SMALL MOLECULES | BIOSENSORS | PERFORMANCE | APTAMER-BASED SENSORS | SERUM | PSEUDOKNOT | PROTEINS | CHEMISTRY, MULTIDISCIPLINARY | Electrochemical analysis | Strands | Biomolecules | Complex media | Nanostructure | Nucleic acids | Sensors | Biosensors | Deoxyribonucleic acid--DNA
Journal Article
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, ISSN 0002-7863, 01/2020, Volume 142, Issue 1, pp. 109 - 119
Disordered homopolymeric regions of single stranded RNA, such as U or A tracts, are found within functional RNAs where they play distinct roles in defining... 
CIRCULAR-DICHROISM | DNA | ION ATMOSPHERE | SECONDARY STRUCTURE | PSEUDOKNOT | POLYRIBOADENYLIC ACID | INNER-SPHERE COMPLEXES | PERSISTENCE LENGTHS | BINDING | CHEMISTRY, MULTIDISCIPLINARY | CONFORMATIONS
Journal Article
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 2018, Volume 115, Issue 15, pp. 3894 - 3899
T box riboswitches are RNA regulatory elements widely used by organisms in the phyla Firmicutes and Actinobacteria to regulate expression of amino acid-related... 
Pseudoknot | Regulation | T box riboswitch | S-turn | TRNA | Mycobacterium | Microbiological research | Ligand binding (Biochemistry) | Mycobacteria | Physiological aspects | Genetic aspects | Research | Transfer RNA | Biological Sciences | tRNA | regulation | pseudoknot
Journal Article
by Yang, LX and Zhong, ZS and Tong, CL and Jia, H and Liu, YR and Chen, G
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, ISSN 0002-7863, 07/2018, Volume 140, Issue 26, pp. 8172 - 8184
A wobble A.C pair can be protonated at near physiological pH to form a more stable wobble A(+).C pair. Here, we constructed an RNA hairpin (rHP) and three... 
DOUBLE-STRANDED-RNA | BASE-PAIRS | FORCE SPECTROSCOPY | THERMODYNAMICS | STRETCHING DNA | CRYSTAL-STRUCTURE | KINETICS | PSEUDOKNOT | STEM-LOOP | NEAREST-NEIGHBOR MODEL | CHEMISTRY, MULTIDISCIPLINARY
Journal Article
Journal of Computational Chemistry, ISSN 0192-8651, 01/2011, Volume 32, Issue 1, pp. 170 - 173
The Nucleic Acid Package (NUPACK) is a growing software suite for the analysis and design of nucleic acid systems. The NUPACK web server... 
sequence design | concentrations | RNA | DNA | complexes | INCLUDING PSEUDOKNOTS | THERMODYNAMIC PROPERTIES | ALGORITHM | SECONDARY STRUCTURE | BASE-PAIRING PROBABILITIES | CHEMISTRY, MULTIDISCIPLINARY | PREDICTION | Models, Molecular | DNA - chemistry | Software | Nucleic Acids - chemistry | Nucleic Acid Conformation | RNA - chemistry
Journal Article
Theoretical Computer Science, ISSN 0304-3975, 10/2017, Volume 696, pp. 52 - 64
A pseudoknot is a crucial intra-molecular structure formed primarily in RNA strands and closely related to important biological processes. This motivates us to... 
Closure and decision properties | Pseudoknots | Pseudoknot-generating operation | Formal languages | SIGNAL | MESSENGER-RNA | COMPUTER SCIENCE, THEORY & METHODS | RNA SECONDARY STRUCTURE | PREDICTION | Computer science | RNA | Algorithms
Journal Article
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