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Nucleic Acids Research, ISSN 0305-1048, 07/2018, Volume 46, Issue W1, pp. W30 - W35
Abstract In the field of RNA structural biology and bioinformatics, an access to correctly annotated RNA structure is of crucial importance, especially in the... 
CLASSIFICATION | BASE-PAIRS | PSEUDOKNOTS | BIOCHEMISTRY & MOLECULAR BIOLOGY | STRUCTURE PREDICTION | SECONDARY STRUCTURES | Web Server Issue
Journal Article
Journal of Virology, ISSN 0022-538X, 02/2019, Volume 93, Issue 8
Foot-and-mouth disease virus (FMDV) is the causative agent of foot-and-mouth disease. It is characterized by genetic instability and different antigenic... 
Journal Article
Journal of Computational Chemistry, ISSN 0192-8651, 01/2011, Volume 32, Issue 1, pp. 170 - 173
Journal Article
Journal Article
Journal of the American Chemical Society, ISSN 0002-7863, 02/2011, Volume 133, Issue 7, pp. 2177 - 2182
Hybridization of DNA strands can be used to build molecular devices, and control of the kinetics of DNA hybridization is a crucial element in the design and... 
CIRCUITS | INCLUDING PSEUDOKNOTS | DESIGN | STRANDS | LOGIC GATES | SUBSTRATE | ALGORITHM | MACHINE | CHEMISTRY, MULTIDISCIPLINARY | Molecular Sequence Data | DNA - chemistry | Nucleic Acid Hybridization | Fluorometry | Kinetics | Base Sequence | Hybridization | Chemical reaction, Rate of | DNA | Analysis | Index Medicus
Journal Article
NUCLEIC ACIDS RESEARCH, ISSN 0305-1048, 02/2019, Volume 47, Issue 4, pp. 1920 - 1934
Caliciviruses use a termination/reinitiation mechanism for translation of their minor capsid protein VP2. A sequence element of about 80 nucleotides denoted... 
FELINE CALICIVIRUS | PROTEIN | MESSENGER-RNA | PSEUDOKNOTS | INITIATION | BIOCHEMISTRY & MOLECULAR BIOLOGY | VPG | IDENTIFICATION | EXPRESSION | TRANSLATION REINITIATION | REVEALS
Journal Article
Nucleic acids research, ISSN 0305-1048, 2013, Volume 41, Issue W1, pp. W471 - 474
RNAstructure is a software package for RNA secondary structure prediction and analysis. This contribution describes a new set of web servers to provide its... 
TARGET | INCLUDING PSEUDOKNOTS | DESIGN | SMALL MOLECULES | SEQUENCES | NONCODING RNAS | BIOCHEMISTRY & MOLECULAR BIOLOGY | HYBRIDIZATION THERMODYNAMICS | ALGORITHM | SIRNA | PROBABILISTIC ALIGNMENT | Software | Internet | Nucleic Acid Conformation | RNA - chemistry | Index Medicus
Journal Article
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, ISSN 0002-7863, 03/2011, Volume 133, Issue 12, pp. 4196 - 4199
Riboswitches are cis-acting RNA fragments that regulate gene expression by sensing cellular levels of the associated small metabolites. In bacteria, the class... 
MODELS | LANDSCAPE | KINETICS | STABILITY | RNA PSEUDOKNOTS | PROTEINS | SIMULATION | BINDING | CHEMISTRY, MULTIDISCIPLINARY
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 10/2009, Volume 38, Issue 1, pp. D280 - D282
Journal Article
Nucleic acids research, ISSN 0305-1048, 04/2010, Volume 38, Issue 7, pp. e103 - e103
RNA pseudoknots are functional structure elements with key roles in viral and cellular processes. Prediction of a pseudoknotted minimum free energy structure... 
INCLUDING PSEUDOKNOTS | MOSAIC-VIRUS RNA | BASE-PAIRS | MESSENGER-RNA | CRYSTAL-STRUCTURE | BIOCHEMISTRY & MOLECULAR BIOLOGY | COMPUTER-SIMULATION | H-TYPE PSEUDOKNOTS | RNA SECONDARY STRUCTURE | PARTITION-FUNCTION | GENETIC ALGORITHM | Software | Algorithms | Sequence Analysis, RNA | Models, Chemical | Nucleic Acid Conformation | RNA - chemistry | Index Medicus | Methods Online
Journal Article
Theoretical Computer Science, ISSN 0304-3975, 10/2017, Volume 696, pp. 52 - 64
A pseudoknot is a crucial intra-molecular structure formed primarily in RNA strands and closely related to important biological processes. This motivates us to... 
Closure and decision properties | Pseudoknots | Pseudoknot-generating operation | Formal languages | SIGNAL | MESSENGER-RNA | COMPUTER SCIENCE, THEORY & METHODS | RNA SECONDARY STRUCTURE | PREDICTION | Computer science | RNA | Algorithms
Journal Article
BIOINFORMATICS, ISSN 1367-4803, 11/2008, Volume 24, Issue 22, pp. 2657 - 2663
Journal Article
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), ISSN 0302-9743, 2016, Volume 9587, pp. 241 - 252
Conference Proceeding
Journal of Computational Biology, ISSN 1066-5277, 03/2019, Volume 26, Issue 3, pp. 173 - 192
Journal Article
BIOINFORMATICS, ISSN 1367-4803, 11/2018, Volume 34, Issue 22, pp. 3849 - 3856
Motivation: The computational prediction of RNA secondary structure by free energy minimization has become an important tool in RNA research. However in... 
REPLICATION | LONG NONCODING RNAS | SEQUENCES | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | ALGORITHM | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | SECONDARY STRUCTURE PREDICTION | STRUCTURE INCLUDING PSEUDOKNOTS
Journal Article
Briefings in Bioinformatics, ISSN 1467-5463, 03/2017, Volume 18, Issue 2, pp. 291 - 305
Abstract RNA secondary structure alignment has received more attention since the discovery of the structure-function relationships in some non-protein-encoding... 
Pseudoknot alignment | RNA secondary structure alignment | RNA alignment | pseudoknot alignment | TREES | SEQUENCES | PSEUDOKNOTS | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | COMMON | MODEL | EDIT DISTANCE | Sequence Alignment | Algorithms | Sequence Analysis, RNA | RNA | Nucleic Acid Conformation | Base Sequence | Index Medicus
Journal Article
NUCLEIC ACIDS RESEARCH, ISSN 0305-1048, 01/2009, Volume 37, pp. D127 - D135
Pseudoknots have been recognized to be an important type of RNA secondary structures responsible for many biological functions. PseudoBase, a widely used... 
BIOCHEMISTRY & MOLECULAR BIOLOGY | ALGORITHM | RNA PSEUDOKNOTS
Journal Article