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BMC Bioinformatics, ISSN 1471-2105, 12/2017, Volume 18, Issue Suppl 14, pp. 501 - 169
Background: Recent breakthroughs in molecular biology and next generation sequencing technologies have led to the expenential growh of the sequence databases.... 
Grid engine | MPI | Cluster | HPC | Blast | Array jobs | Bioinformatics | Next generation sequencing | Multi-threading | Parallelization | SEARCH | BIOCHEMICAL RESEARCH METHODS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | MATHEMATICAL & COMPUTATIONAL BIOLOGY | TOOL | Search Engine | Computational Biology - methods | Software | Algorithms | Databases, Nucleic Acid | Humans | Multiprocessing | Usage | Computational biology
Journal Article
Journal Article
Frontiers in Genetics, ISSN 1664-8021, 2016, Volume 7, p. 5
Within the recent years clock rates of modern processors stagnated while the demand for computing power continued to grow. This applied particularly for the... 
High throughput | FPGA | Multi-core | Bioinformatics | GPU | Sequence analysis | Parallelization | Automatic
Journal Article
Methods in Molecular Biology, ISSN 1064-3745, 2012, Volume 856, pp. 529 - 545
Genomic data analysis in evolutionary biology is becoming so computationally intensive that analysis of multiple hypotheses and scenarios takes too long on a... 
Cloud computing | Amazon EC2 | BioNode | Virtual machine | VirtualBox | Cluster computing | MPI | OpenStack | Evolutionary biology | PAML | Big data | MrBayes | Bioinformatics | Debian Linux | Parallelization | Computers | User-Computer Interface | Genomics - methods | Computer Communication Networks | Evolution, Molecular
Conference Proceeding
Proceedings of the 4th international conference on computing frontiers, 05/2007, pp. 59 - 68
In the life sciences, genomic databases for sequence search have been growing exponentially in size. As a result, faster sequence-search algorithms to search... 
mpiBLAST-PIO | massively parallel computer | Blue Gene/L | multiple masters parallelization | Multiple masters parallelization | Massively parallel computer
Conference Proceeding
Proceedings of the 2012 ACM Research in Applied Computation Symposium, 10/2012, pp. 86 - 91
Large scale experiments in the field of scientific computing, particularly in bioinformatics, typically require both processing of huge amounts of data and... 
parallelization and cloud computing | bioinformatics | Bioinformatics | Parallelization and cloud computing
Conference Proceeding
International Journal for Numerical and Analytical Methods in Geomechanics, ISSN 0363-9061, 03/2016, Volume 40, Issue 4, pp. 469 - 486
Journal Article
Proceedings of the 2015 XSEDE Conference, 07/2015, Volume 2015-, pp. 1 - 8
Interactive Parallelization Tool (IPT) is a semi-automatic tool that can be used by domain experts and students for transforming certain classes of existing... 
high performance computing | interactive parallelization | parallel programming | exascale | DiaGrid | Interactive parallelization | Exascale | Parallel programming | High performance computing | Diagrid
Conference Proceeding
Proceedings of the Conference on extreme science and engineering discovery environment, 07/2013, pp. 1 - 6
Microbial communities that live on the outside and inside of the human body dramatically influence human health and diseases. In recent years, major progress... 
computational biology | human gut | XSEDE | metagenomics | next generation sequencing | bioinformatics | HMP | high performance computing | NGS | human microbiome project | parallelization | Metagenomics | High performance computing | Human gut | Human microbiome project | Ngs | Bioinformatics | Next generation sequencing | Parallelization | Computational biology
Conference Proceeding
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