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Briefings in Bioinformatics, ISSN 1467-5463, 05/2017, Volume 18, Issue 3, pp. 441 - 450
Journal Article
EPIGENETICS & CHROMATIN, ISSN 1756-8935, 07/2019, Volume 12, Issue 1, pp. 42 - 42
BackgroundCUT&RUN is an efficient epigenome profiling method that identifies sites of DNA binding protein enrichment genome-wide with high signal to noise and... 
CUT&RUN | ELEMENTS | Epigenome profiling | Peak calling | DNA | GENETICS & HEREDITY | Chromatin | Genomes | Analysis | Genomics | Protein binding
Journal Article
Briefings in Bioinformatics, ISSN 1467-5463, 11/2011, Volume 12, Issue 6, pp. 626 - 633
Journal Article
01/2013
Chromatin immunoprecipitation followed by sequencing (ChIP-seq) is increasingly being used for genome-wide profiling of transcriptional regulation, as this... 
Peak calling | Gene regulation | Bayesian | ChIP-seq
Web Resource
Current Protocols in Bioinformatics, ISSN 1934-3396, 2011, Volume 2, Issue 34, pp. 1 - 14
Model-based Analysis of ChIP-Seq (MACS) is a command-line tool designed by X. Shirley Liu and colleagues to analyze data generated by ChIP-Seq experiments in... 
Peak-Calling | Epigenome | Chip-Seq | Cistrome | MACS | Transcription Factors - metabolism | Computational Biology - methods | Algorithms | Base Sequence | Chromatin Immunoprecipitation - methods | Binding Sites | Sequence Analysis, DNA | Databases, Factual
Journal Article
Journal Article
Methods in Molecular Biology, ISSN 1064-3745, 2009, Volume 556, pp. 165 - 175
Conference Proceeding
RNA, ISSN 1355-8382, 10/2017, Volume 23, Issue 10, pp. 1493 - 1501
Recent methods for transcriptome-wide N6-methyladenosine (m6A) profiling have facilitated investigations into the RNA methylome and established m6A as a... 
A | A-seq | Peak-calling | Next-generation sequencing | M | RNA methylation | Index Medicus | m6A | next-generation sequencing | Bioinformatics | m6A-seq | peak-calling
Journal Article
Journal Article
RNA, ISSN 1355-8382, 10/2017, Volume 23, Issue 10, pp. 1493 - 1501
Recent methods for transcriptome-wide N-6-methyladenosine (m(6)A) profiling have facilitated investigations into the RNA methylome and established m(6)A as a... 
BROWSER | next-generation sequencing | BIOCHEMISTRY & MOLECULAR BIOLOGY | ALGORITHM | MICRORNAS | mA-seq | IDENTIFICATION | RNA methylation | INTERPOLATED MARKOV-MODELS | MESSENGER-RNA METHYLATION | PACKAGE | UCSC | CHAINS | MERIP-SEQ DATA | peak-calling
Journal Article
PLoS ONE, ISSN 1932-6203, 12/2007, Volume 2, Issue 12, pp. e1365 - e1365
Journal Article
BMC Research Notes, ISSN 1756-0500, 12/2018, Volume 11, Issue 1, pp. 1 - 7
Objective bPeaks is a peak calling program to detect protein DNA-binding sites from ChIPseq data in small eukaryotic genomes. The simplicity of the bPeaks... 
Transcription factors | Genomics | Data processing | Genomes | Research | Gene expression | Data bases | Empowerment | Proteins | Software | Web browsers | Bioinformatics | Binding sites | Deoxyribonucleic acid--DNA | ChIP-seq | bPeaks | Protein DNA-binding sites | Small eukaryotic genomes | Peak calling
Journal Article