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1. Full Text Activation of macrophages by gliadin fragments: isolation and characterization of active peptide
by Ludmila Tučková and Jana Novotná and Petr Novák and Zuzana Flegelová and Tomáš Květoň and Lenka Jelínková and Zdeněk Zídek and Petr Man and Helena Tlaskalová-Hogenová
Journal of Leukocyte Biology, ISSN 0741-5400, 04/2002, Volume 71, Issue 4, pp. 625 - 631
Celiac disease, induced by dietary gluten, is characterized by mucosal atrophy and local inflammation associated with cell infiltration and activation. Unlike... 
celiac disease | iNOS | TNF‐α | IFN‐γ | Celiac disease | IFN-γ | TNF-α | TNF-alpha | ALPHA | PERITONEAL-MACROPHAGES | IMMUNOLOGY | IDENTIFICATION | CELIAC-DISEASE | CELL BIOLOGY | GLUTEN | IFN-gamma | MESSENGER-RNA | NITRIC-OXIDE | T-CELL EPITOPE | BLOOD MONOCYTES | HEMATOLOGY | TISSUE TRANSGLUTAMINASE | Nitric Oxide - biosynthesis | Peptide Fragments - isolation & purification | Mice, Inbred C57BL | Peptide Fragments - pharmacology | Nitric Oxide Synthase Type II | Mice, Inbred C3H | Animals | Chemokine CCL5 - biosynthesis | Female | Interleukin-10 - biosynthesis | Mice | Nitric Oxide Synthase - metabolism | Macrophage Activation - drug effects | Gliadin - pharmacology | Tumor Necrosis Factor-alpha - biosynthesis
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2. Full Text Selected reaction monitoring-based proteomics: Workflows, potential, pitfalls and future directions
by Picotti, Paola and Aebersold, Ruedi
Nature Methods, ISSN 1548-7091, 06/2012, Volume 9, Issue 6, pp. 555 - 566
Selected reaction monitoring (SRM) is a targeted mass spectrometry technique that is emerging in the field of proteomics as a complement to untargeted shotgun... 
PEPTIDE IMMUNOAFFINITY ENRICHMENT | MULTIPLEXED ASSAYS | TARGETED MASS-SPECTROMETRY | HUMAN PLASMA | BIOMARKER | SHOTGUN PROTEOMICS | BIOCHEMICAL RESEARCH METHODS | ABSOLUTE QUANTIFICATION | PROTEIN-PHOSPHORYLATION | QUANTITATIVE-ANALYSIS | SACCHAROMYCES-CEREVISIAE | Peptide Fragments - analysis | Metabolic Networks and Pathways | Proteomics - trends | Signal Transduction | Systems Biology - trends | Peptide Fragments - isolation & purification | Sensitivity and Specificity | Biomarkers - analysis | Isotope Labeling | Protein Processing, Post-Translational | Proteomics - methods | Mass Spectrometry - methods | Proteins | Measurement | Usage | Liquid chromatography | Research | Mass spectrometry | Biomarkers | Peptides | Spectrum analysis | Proteomics
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3. Full Text Isolation of pH-sensitive antibody fragments by fluorescence-activated cell sorting and yeast surface display
by Schröter, Christian and Krah, Simon and Beck, Jan and Könning, Doreen and Grzeschik, Julius and Valldorf, Bernhard and Zielonka, Stefan and Kolmar, Harald
Methods in Molecular Biology, ISSN 1064-3745, 2018, Volume 1685, pp. 311 - 331
Fluorescence-activated cell sorting (FACS) in combination with yeast surface display (YSD) has proven to be a valuable tool for the engineering of antibodies.... 
Fab display | Protein engineering | pH-switch engineering | Fluorescence-activated cell sorting (FACS) | pH-dependent antigen binding | Antibody engineering | Yeast surface display | Flow Cytometry - methods | Protein Engineering - methods | Saccharomyces cerevisiae - genetics | Humans | Cell Separation - methods | Peptide Library | Immunoglobulin Fragments - metabolism | Saccharomyces cerevisiae - metabolism | Cloning, Molecular | Immunoglobulin Fragments - isolation & purification | Histidine - chemistry | Saccharomyces cerevisiae - growth & development | Hydrogen-Ion Concentration
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4. Full Text Isolation & structure-function characterization of a signaling-Active rhodopsin-G protein complex
by Gao, Yang and Westfield, Gerwin and Erickson, Jon W and Cerione, Richard A and Skiniotis, Georgios and Ramachandran, Sekar
Journal of Biological Chemistry, ISSN 0021-9258, 08/2017, Volume 292, Issue 34, pp. 14280 - 14289
The visual photo-transduction cascade is a prototypical G protein-coupled receptor (GPCR) signaling system, in which light-activated rhodopsin (Rho*) is the... 
SMALL-ANGLE SCATTERING | ALPHA-SUBUNIT | signal transduction | CRYSTAL-STRUCTURE | BIOCHEMISTRY & MOLECULAR BIOLOGY | COUPLED RECEPTOR | 7-helix receptor | EM | ADRENERGIC-RECEPTOR | SAXS | rhodopsin | MONOMERIC RHODOPSIN | photo-transduction | HIGH-RESOLUTION | G protein-coupled receptor (GPCR) | G-protein | structural biology | transducin | MEMBRANE-PROTEINS | ARRESTIN-1 BINDING | Rhodopsin - isolation & purification | Recombinant Fusion Proteins - isolation & purification | Retina - metabolism | Rod Cell Outer Segment - metabolism | Detergents - chemistry | Eye Proteins - chemistry | Eye Proteins - isolation & purification | Crystallography, X-Ray | Rhodopsin - metabolism | Recombinant Fusion Proteins - metabolism | Cattle | Retina - enzymology | X-Ray Diffraction | Light | GTP-Binding Protein beta Subunits - isolation & purification | Transducin - metabolism | Eye Proteins - genetics | GTP-Binding Protein beta Subunits - metabolism | Protein Stability - radiation effects | Peptide Fragments - genetics | Rod Cell Outer Segment - radiation effects | Protein Multimerization - radiation effects | Rhodopsin - chemistry | Retina - radiation effects | Transducin - isolation & purification | Transducin - genetics | GTP-Binding Protein gamma Subunits - metabolism | Peptide Fragments - metabolism | GTP-Binding Protein gamma Subunits - chemistry | Peptide Fragments - isolation & purification | Solubility | Models, Molecular | Scattering, Small Angle | Recombinant Fusion Proteins - chemistry | Microscopy, Electron | Transducin - chemistry | GTP-Binding Protein beta Subunits - chemistry | Peptide Fragments - chemistry | Animals | Protein Conformation - radiation effects | Eye Proteins - metabolism | GTP-Binding Protein gamma Subunits - isolation & purification | Rod Cell Outer Segment - enzymology | Editors' Picks
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5. Full Text Optimized fast and sensitive acquisition methods for shotgun proteomics on a quadrupole orbitrap mass spectrometer
by Kelstrup, Christian D and Young, Clifford and Lavallee, Richard and Nielsen, Michael L and Olsen, Jesper V
Journal of Proteome Research, ISSN 1535-3893, 06/2012, Volume 11, Issue 6, pp. 3487 - 3497
Advances in proteomics are continually driven by the introduction of new mass spectrometric instrumentation with improved performances. The recently introduced... 
HCD | Orbitrap | parallel operation | data-dependent | LCMS | Q Exactive | C-TRAP | PEPTIDE IDENTIFICATION | QUANTIFICATION | BIOCHEMICAL RESEARCH METHODS | FRAGMENTATION | PERFORMANCE EVALUATION | ACCURACY | PRECISION | HIGH-RESOLUTION | EXPRESSION | RANGE | Fungal Proteins - chemistry | Peptide Fragments - isolation & purification | Humans | Proteome - chemistry | Peptide Fragments - chemistry | Sensitivity and Specificity | Proteomics | Chromatography, Liquid | HeLa Cells | Fungal Proteins - isolation & purification | Proteome - isolation & purification | Proteome - metabolism | Tandem Mass Spectrometry - methods | Fungal Proteins - metabolism
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6. Full Text Current peptidomics: Applications, purification, identification, quantification, and functional analysis
by Dallas, David C and Guerrero, Andres and Parker, Evan A and Robinson, Randall C and Gan, Junai and German, J. Bruce and Barile, Daniela and Lebrilla, Carlito B
PROTEOMICS, ISSN 1615-9853, 03/2015, Volume 15, Issue 5-6, pp. 1026 - 1038
Peptidomics is an emerging field branching from proteomics that targets endogenously produced protein fragments. Endogenous peptides are often functional... 
Structure prediction | Peptidomics | Quantitation | Systems biology | Functional prediction | MS | BIOACTIVE PEPTIDES | URINARY BIOMARKERS | BIOCHEMISTRY & MOLECULAR BIOLOGY | BIOCHEMICAL RESEARCH METHODS | MASS-SPECTROMETRY | PROTEIN IDENTIFICATION | ENDOGENOUS PEPTIDES | STREPTOCOCCUS-THERMOPHILUS | SELECTIVE ENRICHMENT | SPECTRAL NETWORKS | CAPILLARY-ELECTROPHORESIS | Peptide Fragments - metabolism | Peptide Fragments - isolation & purification | Humans | Infant | Digestion | Systems Biology | Peptide Fragments - analysis | Sequence Analysis, Protein | Food Analysis | Peptide Fragments - chemistry | Animals | Cattle | Dietary Proteins | Mass Spectrometry | Biomarkers | Protein Conformation | Proteomics - methods | Peptides
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7. Full Text Isolation and characterisation of Ebolavirus-specific recombinant antibody fragments from murine and shark immune libraries
by Goodchild, Sarah A and Dooley, Helen and Schoepp, Randal J and Flajnik, Martin and Lonsdale, Stephen G
Molecular Immunology, ISSN 0161-5890, 09/2011, Volume 48, Issue 15-16, pp. 2027 - 2037
► Robust reagents are required for sensitive, specific detection of Ebolavirus. ► Recombinant reagents have been derived from murine and shark antibody... 
Ebolavirus | Bio-panning | scFv | IgNAR | Nurse shark | ScFv | LINKED-IMMUNOSORBENT-ASSAY | BIOCHEMISTRY & MOLECULAR BIOLOGY | STRUCTURAL-ANALYSIS | PHAGE DISPLAY | REPERTOIRE DEVELOPMENT | IMMUNOLOGY | SINGLE-DOMAIN ANTIBODIES | VIRUS NUCLEOPROTEIN | MARBURG VIRUSES | HEMORRHAGIC-FEVER | MONOCLONAL-ANTIBODIES | Enzyme-Linked Immunosorbent Assay | Viral Proteins - immunology | Peptide Library | Blotting, Western | Ebolavirus - immunology | Recombinant Proteins - isolation & purification | Animals | Immunoglobulin Fragments - immunology | Antibody Specificity - immunology | Recombinant Proteins - immunology | Immunoglobulin Fragments - isolation & purification | Protein Denaturation | Mice | Sharks - immunology | Proteins | Libraries | Chemical tests and reagents | Denaturation | Nurses | Immunoglobulin G
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8. Full Text Accuracy of ELISA detection methods for gluten and reference materials: A realistic assessment
by Diaz-Amigo, Carmen and Popping, Bert
Journal of Agricultural and Food Chemistry, ISSN 0021-8561, 06/2013, Volume 61, Issue 24, pp. 5681 - 5688
The determination of prolamins by ELISA and subsequent conversion of the resulting concentration to gluten content in food appears to be a comparatively simple... 
gluten | detection methods | action levels | European Regulation | Codex Alimentarius | reference material | validation | ELISA | gluten-free | WHEAT GLUTEN | UNITED-STATES | GLIADIN | PROCESSED FOODS | ENZYME-IMMUNOASSAY | FOOD SCIENCE & TECHNOLOGY | MONOCLONAL-ANTIBODY | CELIAC-DISEASE PATIENTS | SANDWICH ELISA | COMPETITIVE ELISA | OATS | AGRICULTURE, MULTIDISCIPLINARY | CHEMISTRY, APPLIED | Antibody Specificity | Legislation, Food | Allergens - analysis | Glutens - analysis | Humans | Food Labeling - legislation & jurisprudence | Glutens - chemistry | Enzyme-Linked Immunosorbent Assay - standards | Prolamins - isolation & purification | Prolamins - analysis | Reference Standards | Allergens - chemistry | Edible Grain - chemistry | Allergens - isolation & purification | Diet, Gluten-Free | Dietary Proteins - isolation & purification | Limit of Detection | Reproducibility of Results | Peptide Fragments - isolation & purification | Food Inspection - methods | Peptide Fragments - standards | Dietary Proteins - chemistry | Peptide Fragments - analysis | Dietary Proteins - analysis | Peptide Fragments - chemistry | Food Inspection - standards | Food Labeling - standards | Glutens - standards | European Union | Dietary Proteins - standards | Glutens - isolation & purification
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9. Full Text The oleic acid complexes of proteolytic fragments of α‐lactalbumin display apoptotic activity
by Tolin, Serena and De Franceschi, Giorgia and Spolaore, Barbara and Frare, Erica and Canton, Marcella and Polverino de Laureto, Patrizia and Fontana, Angelo
The FEBS Journal, ISSN 1742-464X, 01/2010, Volume 277, Issue 1, pp. 163 - 173
The complexes formed by partially folded human and bovine α‐lactalbumin with oleic acid (OA) have been reported to display selective apoptotic activity against... 
apoptosis | HAMLET | α‐lactalbumin | protein fragments | oleic acid | Protein fragments | α-lactalbumin | Oleic acid | Apoptosis | LIMITED PROTEOLYSIS | AMPHITROPIC PROTEINS | MOLTEN GLOBULE STATE | BIOCHEMISTRY & MOLECULAR BIOLOGY | CRYSTAL-STRUCTURES | FIBRILLIZATION IN-VITRO | FATTY-ACIDS | GASTRIC LIPASE | alpha-lactalbumin | CIRCULAR-DICHROISM | TUMOR-CELL DEATH | POLY-AMINO ACIDS | Protein Structure, Secondary | Species Specificity | Apoptosis - drug effects | Jurkat Cells | Peptide Fragments - isolation & purification | Humans | Lactalbumin - chemistry | Lactalbumin - isolation & purification | Peptide Fragments - pharmacology | Macromolecular Substances | Oleic Acids - isolation & purification | Peptide Fragments - chemistry | Animals | Cattle | Lactalbumin - pharmacology | Protein Conformation | Oleic Acids - pharmacology | In Vitro Techniques | Oleic Acids - chemistry
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10. Full Text Quantification of Thyroglobulin, a Low-Abundance Serum Protein, by Immunoaffinity Peptide Enrichment and Tandem Mass Spectrometry
by Hoofnagle, Andrew N and Becker, Jessica O and Wener, Mark H and Heinecke, Jay W
Clinical Chemistry, ISSN 0009-9147, 11/2008, Volume 54, Issue 11, pp. 1796 - 1804
BACKGROUND: Quantification of serum tumor markers plays an important role in determining whether patients treated for cancer require further therapy. Whereas... 
ANTIBODIES | TG AUTOANTIBODIES | BOVINE THYROGLOBULIN | STANDARDIZATION | ASSAYS | PREVALENCE | MEDICAL LABORATORY TECHNOLOGY | DIFFERENTIATED THYROID-CARCINOMA | CANCER | ISOTOPE-DILUTION | INSULIN IMMUNOASSAYS | Thyroglobulin - isolation & purification | Amino Acid Sequence | Immunoassay | Reproducibility of Results | Chromatography, High Pressure Liquid - methods | Peptide Fragments - isolation & purification | Humans | Thyroglobulin - chemistry | Thyroglobulin - blood | Peptide Fragments - chemistry | Reference Standards | Peptide Mapping | Sensitivity and Specificity | Peptide Fragments - blood | Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization | Tandem Mass Spectrometry - methods | Chromatography, Affinity - methods
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11. Full Text Flow-cytometric isolation of human antibodies from a nonimmune Saccharomyces cerevisiae surface display library
by Yeung, Yik A and Swers, Jeffrey and Heinzelman, Peter and Coleman, James R and Cochran, Jennifer R and Graff, Christilyn and Wittrup, K. Dane and Wiley, H. Steven and Siegel, Robert W and Opresko, Lee K and Feldhaus, Jane M. Weaver and Feldhaus, Michael J and Colby, David and Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
Nature Biotechnology, ISSN 1087-0156, 02/2003, Volume 21, Issue 2, pp. 163 - 170
A nonimmune library of 10(9) human antibody scFv fragments has been cloned and expressed on the surface of yeast, and nanomolar-affinity scFvs routinely... 
B-CELLS | FRAGMENTS | PERIPLASMIC EXPRESSION | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | HIGH-AFFINITY | PHAGE DISPLAY | GENE REPERTOIRE | T-CELL RECEPTOR | SELECTION | PROTEINS | DIRECTED EVOLUTION | Flow Cytometry - methods | Microchemistry - methods | Saccharomyces cerevisiae - genetics | Humans | Immunoglobulin Variable Region - metabolism | Male | Immunoglobulin Variable Region - immunology | Peptide Library | Feasibility Studies | Polymerase Chain Reaction - methods | Recombinant Proteins - isolation & purification | Saccharomyces cerevisiae - metabolism | Microspheres | Cloning, Molecular | Female | Membrane Proteins - metabolism | Gene Expression Regulation, Fungal | Recombinant Proteins - metabolism | Membrane Proteins - isolation & purification | Saccharomyces cerevisiae - immunology | Membrane Proteins - genetics | Nanotechnology - methods | Cells, Cultured | Membrane Proteins - immunology | Recombinant Proteins - genetics | Immunoglobulin Fragments - immunology | Immunoglobulin Variable Region - isolation & purification | Recombinant Proteins - immunology | Immunoglobulin Fragments - isolation & purification | Immunoglobulin Fragments - genetics | Immunoglobulin Variable Region - genetics | Saccharomyces cerevisiae - isolation & purification | ANTIBODIES | STABILITY | SACCHAROMYCES CEREVISIAE | b-cells | ANTIGENS | gene repertoire | 60 APPLIED LIFE SCIENCES | T-cell receptor | selection | AFFINITY | proteins | PURIFICATION | YEASTS | SORTING | periplasmic expression | fragments | phage display, high-affinity | directed evolution
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