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1. Full Text The deoxyribose phosphate lyase of DNA polymerase β suppresses a processive DNA synthesis to prevent trinucleotide repeat instability
by Lai, Yanhao and Weizmann, Yossi and Liu, Yuan
Nucleic acids research, ISSN 0305-1048, 09/2018, Volume 46, Issue 17, pp. 8940 - 8952
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Trinucleotide Repeats | Genomic Instability | Humans | Genetic Complementation Test | DNA-(Apurinic or Apyrimidinic Site) Lyase - genetics | DNA - biosynthesis | DNA Polymerase beta - metabolism | DNA Polymerase beta - genetics | Flap Endonucleases - genetics | Fibroblasts - chemistry | Fibroblasts - metabolism | Phosphorus-Oxygen Lyases - genetics | Cell-Free System - chemistry | Gene Expression Regulation | DNA Replication | Flap Endonucleases - metabolism | Oligonucleotides - chemical synthesis | Trinucleotide Repeat Expansion | DNA - genetics | Oligonucleotides - metabolism | Animals | Cell-Free System - metabolism | DNA-(Apurinic or Apyrimidinic Site) Lyase - metabolism | DNA Repair | Mice | Phosphorus-Oxygen Lyases - metabolism | Index Medicus | Genome Integrity, Repair and
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2. Full Text Expanded Substrate Scope of DNA Polymerase θ and DNA Polymerase β: Lyase Activity on 5′-Overhangs and Clustered Lesions
by Laverty, Daniel J and Greenberg, Marc M
Biochemistry (Easton), ISSN 0006-2960, 10/2018, Volume 57, Issue 42, pp. 6119 - 6127
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | DNA Repair | Humans | DNA Polymerase beta - chemistry | Substrate Specificity | DNA Replication | Phosphorus-Oxygen Lyases - chemistry | DNA Damage | DNA Polymerase beta - metabolism | DNA-Directed DNA Polymerase - chemistry | DNA-Directed DNA Polymerase - metabolism | Phosphorus-Oxygen Lyases - metabolism | Index Medicus
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3. Full Text Cyclic di-AMP: Another second messenger enters the fray
by Corrigan, Rebecca M and Gründling, Angelika
Nature reviews. Microbiology, ISSN 1740-1526, 08/2013, Volume 11, Issue 8, pp. 513 - 524
Life Sciences & Biomedicine | Microbiology | Science & Technology | Protein Structure, Tertiary | Bacteria - metabolism | Phosphorus-Oxygen Lyases - genetics | Signal Transduction | Cell Wall - genetics | Eukaryotic Cells - metabolism | Intracellular Signaling Peptides and Proteins - metabolism | Dinucleoside Phosphates - metabolism | Bacteria - genetics | Protein Transport | Host-Pathogen Interactions | Carrier Proteins - genetics | Carrier Proteins - metabolism | Proteolysis | Cell Wall - metabolism | Dinucleoside Phosphates - genetics | Phosphorus-Oxygen Lyases - classification | Transcription, Genetic | Gene Expression Regulation, Bacterial | Phosphorus-Oxygen Lyases - metabolism | Eukaryotic Cells - microbiology | Intracellular Signaling Peptides and Proteins - genetics | Cellular signal transduction | Microbial enzymes | Research | Properties | Bacterial proteins | Index Medicus
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4. Full Text Identification of a conserved 5′-dRP lyase activity in bacterial DNA repair ligase D and its potential role in base excision repair
by De Ory, Ana and Nagler, Katja and Carrasco, Begoña and Raguse, Marina and Zafra, Olga and Moeller, Ralf and De Vega, Miguel
Nucleic acids research, ISSN 0305-1048, 01/2016, Volume 44, Issue 4, pp. 1833 - 1844
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Phosphorus-Oxygen Lyases - genetics | DNA End-Joining Repair - genetics | DNA Ligases - genetics | Pseudomonas aeruginosa - enzymology | Bacillus subtilis - enzymology | DNA Repair - genetics | Phosphorus-Oxygen Lyases - metabolism | DNA Breaks, Double-Stranded | DNA Ligases - metabolism | Index Medicus | Nucleic Acid Enzymes
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5. Full Text Probing the Flexibility of the Catalytic Nucleophile in the Lyase Catalytic Pocket of Human DNA Polymerase β with Unnatural Lysine Analogues
by Daskalova, Sasha M and Bhattacharya, Chandrabali and Dedkova, Larisa M and Hecht, Sidney M
Biochemistry (Easton), ISSN 0006-2960, 01/2017, Volume 56, Issue 3, pp. 500 - 513
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Codon - metabolism | Protein Biosynthesis | Humans | DNA Polymerase beta - chemistry | Cloning, Molecular | Escherichia coli - metabolism | Protein Domains | Transcription, Genetic | Lysine - metabolism | Phosphorus-Oxygen Lyases - chemistry | Codon - genetics | DNA Polymerase beta - metabolism | DNA Polymerase beta - genetics | RNA, Transfer, Lys - metabolism | Recombinant Proteins - metabolism | Amino Acid Sequence | Lysine - analogs & derivatives | Catalytic Domain | RNA, Transfer, Lys - chemistry | Phosphorus-Oxygen Lyases - genetics | Protein Structure, Secondary | Models, Molecular | Recombinant Proteins - chemistry | Recombinant Proteins - genetics | DNA - metabolism | RNA, Transfer, Lys - genetics | DNA - genetics | DNA - chemistry | Escherichia coli - genetics | DNA Repair | Schiff Bases - chemistry | Schiff Bases - metabolism | Phosphorus-Oxygen Lyases - metabolism | Polymerase chain reaction | Schiff bases | Usage | Chemical properties | Nucleophiles | Index Medicus
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6. Full Text Cyclic Di-AMP homeostasis in bacillus subtilis: Both lack and high level accumulation of the nucleotide are detrimental for cell growth
by Mehne, Felix M. P and Gunka, Katrin and Eilers, Hinnerk and Herzberg, Christina and Kaever, Volkhard and Stülke, Jörg
The Journal of biological chemistry, ISSN 0021-9258, 01/2013, Volume 288, Issue 3, pp. 2004 - 2017
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Recombinant Proteins - metabolism | Genome, Bacterial | Phosphorus-Oxygen Lyases - genetics | Signal Transduction | Isoenzymes - genetics | Cell Wall - genetics | Homeostasis | Models, Molecular | Recombinant Proteins - chemistry | Magnesium - metabolism | Isoenzymes - chemistry | Recombinant Proteins - genetics | Spores, Bacterial - metabolism | Dinucleoside Phosphates - metabolism | Bacillus subtilis - genetics | Spores, Bacterial - genetics | Escherichia coli - genetics | Isoenzymes - metabolism | Cell Wall - metabolism | Phosphorus-Oxygen Lyases - chemistry | Phosphorus-Oxygen Lyases - metabolism | Bacillus subtilis - metabolism | Index Medicus | Diadenylate Cyclase | Cell Wall Metabolism | Microbiology | Prokaryotic Signal Transduction | Bacterial Signal Transduction | Bacillus | c-di-AMP | Cyclic Nucleotides | Protein-Protein Interactions | DAC Domain
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7. Full Text The shikimate pathway and aromatic amino acid biosynthesis in plants
by Maeda, Hiroshi and Dudareva, Natalia
Annual review of plant biology, ISSN 1543-5008, 06/2012, Volume 63, Issue 1, pp. 73 - 105
metabolite transport | metabolic engineering | subcellular localization | plant metabolism | metabolic regulation | Phenylalanine - biosynthesis | Tyrosine - biosynthesis | Amino Acids, Aromatic - biosynthesis | Humans | Alkyl and Aryl Transferases - metabolism | 3-Deoxy-7-Phosphoheptulonate Synthase - genetics | Shikimic Acid - metabolism | Phosphotransferases (Alcohol Group Acceptor) - metabolism | Plants - metabolism | Tryptophan - biosynthesis | Biological Transport | Plants - genetics | Alkyl and Aryl Transferases - genetics | Transcription, Genetic | Hydro-Lyases - metabolism | Anthranilate Synthase - metabolism | Phosphorus-Oxygen Lyases - metabolism | Physiological aspects | Amino acids | Biosynthesis | Research | Phytochemistry | Plant metabolites | Herbicides | Enzymes | Flowers & plants | Metabolism | Index Medicus | Space life sciences
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8. Full Text An Oxygen-Sensing Diguanylate Cyclase and Phosphodiesterase Couple for c-di-GMP Control
by Tuckerman, Jason R and Gonzalez, Gonzalo and Sousa, Eduardo H. S and Wan, Xuehua and Saito, Jennifer A and Alam, Maqsudul and Gilles-Gonzalez, Marie-Alda
Biochemistry (Easton), ISSN 0006-2960, 10/2009, Volume 48, Issue 41, pp. 9764 - 9774
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Humans | Bacteria - drug effects | Bacterial Proteins - chemistry | Homeostasis | Oxygen - metabolism | Cyclic GMP - isolation & purification | Cyclic GMP - analogs & derivatives | Bordetella pertussis - metabolism | Cyclic GMP - chemistry | Escherichia coli - metabolism | Phosphorus-Oxygen Lyases - chemistry | Escherichia coli - enzymology | Phosphoric Diester Hydrolases - metabolism | Phosphorus-Oxygen Lyases - genetics | Bacterial Infections - drug therapy | Models, Molecular | Phosphorus-Oxygen Lyases - isolation & purification | Escherichia coli Proteins - metabolism | Phosphoric Diester Hydrolases - genetics | Escherichia coli Proteins - isolation & purification | Operon - genetics | Phosphoric Diester Hydrolases - chemistry | Bacterial Infections - physiopathology | Gene Expression Regulation, Enzymologic | Phosphoric Diester Hydrolases - isolation & purification | Cyclic GMP - metabolism | Escherichia coli - genetics | Protein Binding | Bacterial Proteins - metabolism | Anti-Bacterial Agents - pharmacology | Escherichia coli Proteins - chemistry | Phosphorus-Oxygen Lyases - metabolism | Bordetella pertussis - enzymology | Hydrogen-Ion Concentration | Research | Chemical properties | Structure | Phosphodiesterases | Escherichia coli | Organic compounds | Index Medicus
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9. Full Text Human DNA polymerase θ possesses 5′-dRP lyase activity and functions in single-nucleotide base excision repair in vitro
by Prasad, Rajendra and Longley, Matthew J and Sharief, Farida S and Hou, Esther W and Copeland, William C and Wilson, Samuel H
Nucleic acids research, ISSN 0305-1048, 4/2009, Volume 37, Issue 6, pp. 1868 - 1877
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Protein Structure, Tertiary | Catalytic Domain | Peptides - chemistry | DNA Repair | Humans | Phosphorus-Oxygen Lyases - chemistry | DNA-Directed DNA Polymerase - chemistry | DNA-Directed DNA Polymerase - metabolism | Kinetics | Phosphorus-Oxygen Lyases - metabolism | Index Medicus | Nucleic Acid Enzymes
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10. Full Text 5 '-Deoxyribose phosphate lyase activity of human DNA polymerase iota in vitro
by Bebenek, K and Tissier, A and Frank, EG and McDonald, JP and Prasad, R and Wilson, SH and Woodgate, R and Kunkel, TA
Science (American Association for the Advancement of Science), ISSN 0036-8075, 03/2001, Volume 291, Issue 5511, pp. 2156 - 2159
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Amino Acid Sequence | Uracil-DNA Glycosidase | Humans | Molecular Sequence Data | DNA - metabolism | DNA-Directed DNA Polymerase - chemistry | Recombinant Fusion Proteins - metabolism | DNA Glycosylases | DNA Ligases - metabolism | N-Glycosyl Hydrolases - metabolism | DNA-(Apurinic or Apyrimidinic Site) Lyase | Base Pairing | Base Sequence | DNA Repair | Carbon-Oxygen Lyases - metabolism | DNA Ligase ATP | Deoxyribonuclease IV (Phage T4-Induced) | Uracil - metabolism | DNA-Directed DNA Polymerase - metabolism | Phosphorus-Oxygen Lyases - metabolism | Schiff Bases | Ribosemonophosphates - metabolism | Proteins | Deoxyribonucleic acid | DNA | Genes | Cells | 5'-deoxyribose phosphate lyase | Index Medicus
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11. Full Text Altered regulation of the diguanylate cyclase YaiC reduces production of type 1 fimbriae in a Pst mutant of uropathogenic Escherichia coli CFT073
by Crépin, Sébastien and Porcheron, Gaëlle and Houle, Sébastien and Harel, Josée and Dozois, Charles M
Journal of bacteriology, ISSN 0021-9193, 2017, Volume 199, Issue 24, pp. e00168 - 17
Pho regulon | Pst | Urinary tract infection | C-di-GMP | Escherichia coli | Phosphate | Type 1 fimbriae | UPEC | Multigene Family | Recombinases - genetics | Humans | Virulence | Fimbriae, Bacterial - genetics | Regulon | ATP-Binding Cassette Transporters - genetics | Cyclic GMP - analogs & derivatives | Uropathogenic Escherichia coli - metabolism | Urinary Bladder - cytology | Urinary Tract Infections - microbiology | Urinary Bladder - microbiology | Phosphorus-Oxygen Lyases - genetics | Operon | Escherichia coli Infections - microbiology | Escherichia coli Proteins - metabolism | Transcription Factors - genetics | Uropathogenic Escherichia coli - genetics | Phosphates - metabolism | Animals | Cyclic GMP - metabolism | Cyclic GMP - genetics | Escherichia coli Proteins - genetics | Mice | Mutation | Gene Expression Regulation, Bacterial | Phosphorus-Oxygen Lyases - metabolism | Uropathogenic Escherichia coli - enzymology | Fimbriae, Bacterial - metabolism | Genetic aspects | Research | Gene mutations | Gene expression | Bacteria, Pathogenic | Salmonella | Deactivation | Transcription | Genes | Bladder | Biosynthesis | Urinary tract | Recombinase | Inactivation | Accumulation | Molecular modelling | Pili | E coli | Clonal deletion | Rodents | Urinary tract infections | Bacteria | Attenuation | Index Medicus | Phosphates | Fimbriae, Bacterial | Recombinases | Life Sciences | Uropathogenic Escherichia coli | ATP-Binding Cassette Transporters | Urinary Tract Infections | Escherichia coli Proteins | Escherichia coli Infections | Phosphorus-Oxygen Lyases | Cyclic GMP | Transcription Factors | Urinary Bladder
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