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2009, 2nd ed., ISBN 0521730716, xxvi, 723
The Phylogenetic Handbook is a broad, hands on guide to theory and practice of nucleotide and protein phylogenetic analysis. This second edition includes six... 
models | genetics | amino acid sequence | methods | DNA | proteins | cladistic analysis | data processing | phylogeny | sequence analysis | handbooks, manuals, etc | Phylogeny
Book
Methods in Ecology and Evolution, ISSN 2041-210X, 12/2012, Volume 3, Issue 6, pp. 1084 - 1092
Summary 1. The R package ‘diversitree’ contains a number of classical and contemporary comparative phylogenetic methods. Key included methods are BiSSE (binary... 
macroevolution | comparative methods | birth–death process | extinction | speciation | Macroevolution | Extinction | Birth-death process | Comparative methods | Speciation | ADAPTIVE RADIATION | LIKELIHOOD APPROACH | birth-death process | INFERENCE | CHARACTERS | EVOLUTION | TREES | EQUILIBRIUM | ECOLOGY | EXTINCTION RATES | TRAITS | Phylogenetics | Evolution | Diversification | Methods
Journal Article
New Phytologist, ISSN 0028-646X, 7/2013, Volume 199, Issue 1, pp. 288 - 299
Journal Article
Applied and Environmental Microbiology, ISSN 0099-2240, 02/2011, Volume 77, Issue 4, pp. 1153 - 1161
Journal Article
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 3/2009, Volume 106, Issue 10, pp. 3859 - 3864
Journal Article
Bioinformatics, ISSN 1367-4803, 02/2011, Volume 27, Issue 4, pp. 592 - 593
phangorn is a package for phylogenetic reconstruction and analysis in the R language. Previously it was only possible to estimate phylogenetic trees with... 
MAXIMUM-LIKELIHOOD | EVOLUTION | MODEL | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | Computational Biology - methods | Likelihood Functions | Models, Genetic | Software | Phylogeny | Applications Note
Journal Article
2015, ISBN 9781107019652, xii, 249 pages
"What are the models used in phylogenetic analysis and what exactly is involved in Bayesian evolutionary analysis using Markov chain Monte Carlo (MCMC)... 
Bayesian statistical decision theory | bayesian analysis | Cladistic analysis | Informatique | Data processing | phylogenetics | Théorie de la décision bayésienne | Analyse cladistique
Book
11/2014, Volume 46, Issue 11, 7
Book Chapter