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1. Inferring phylogenies
by Felsenstein, Joseph
2004, ISBN 0878931775, xx, 664
Mathematics | Cladistic analysis
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2. Phylogenetic networks
: concepts, algorithms and applications
by Huson, Daniel H and Rupp, Regula and Scornavacca, Celine
2011, ISBN 9780521755962, xii, 362 p. : ill. ; 25 cm.
Cladistic analysis | Informatique | Mathématiques | Data processing | Mathematics | Phylogeny | Analyse cladistique | Phylogenèse
Book
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3. Full Text Short Tree, Long Tree, Right Tree, Wrong Tree: New Acquisition Bias Corrections for Inferring SNP Phylogenies
by Adam D. Leaché and Barbara L. Banbury and Joseph Felsenstein and Adrián Nieto-Montes De Oca and Alexandros Stamatakis
Systematic biology, ISSN 1063-5157, 11/2015, Volume 64, Issue 6, pp. 1032 - 1047
Conditional likelihood | SVDquartets | maximum likelihood | reconstituted DNA | Phrynosomatidae | ddRADseq | Phrynosoma | Life Sciences & Biomedicine | Evolutionary Biology | Science & Technology | Lizards - classification | Animals | Computer Simulation | Lizards - genetics | Polymorphism, Single Nucleotide - genetics | Classification - methods | Phylogeny | Phylogenetics | Reptiles & amphibians | Deoxyribonucleic acid--DNA | Polymorphism | Index Medicus | Regular
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4. Full Text Estimating Species Trees from Unrooted Gene Trees
by Liang Liu and Lili Yu
Systematic biology, ISSN 1063-5157, 10/2011, Volume 60, Issue 5, pp. 661 - 667
Biological taxonomies | Internodes | Phylogenetics | Genetic loci | Topology | Phylogeny | Species | Consistent estimators | We they distinction | Estimation methods | species tree | Coalescent theory | gene tree | neighbor joining | Life Sciences & Biomedicine | Evolutionary Biology | Science & Technology | Biological Evolution | Computational Biology - methods | Computer Simulation | Bayes Theorem | Models, Genetic | Saccharomyces - classification | Saccharomyces - genetics | Trees | Simulation | Genomics | Nonnative species | Index Medicus
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5. Full Text The Inference of Gene Trees with Species Trees
by Szöllősi, Gergely J and Tannier, Eric and Daubin, Vincent and Boussau, Bastien
Systematic biology, ISSN 1063-5157, 01/2015, Volume 64, Issue 1, pp. e42 - e62
gene transfer | dynamic programming | hybridization | Algorithm | birth-death model | coalescent | species tree | gene loss | gene duplication | gene tree | maximum likelihood | phylogenetics | amalgamation | Bayesian inference | Life Sciences & Biomedicine | Evolutionary Biology | Science & Technology | Phylogeny | Mutation - genetics | Models, Biological | Computer Simulation | Genetic Speciation | Genome - genetics | Trees | Phylogenetics | Evolutionary biology | Molecular biology | Chromosomes | Genomics | Index Medicus | Life Sciences | Quantitative Methods | Bioinformatics | Computer Science | birth–death model | Mathematical and Computational Evolutionary Biology | Special Issue
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6. Phylogenetic trees made easy
: a how-to manual
by Hall, Barry G
2011, 4th ed., ISBN 0878936068, xiv, 282
Data processing | Phylogeny | Phylogenèse | Informatique
Book
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7. Full Text Relating phylogenetic trees to transmission trees of infectious disease outbreaks
by Ypma, Rolf J. F and van Ballegooijen, W. Marijn and Wallinga, Jacco
Genetics (Austin), ISSN 0016-6731, 2013, Volume 195, Issue 3, pp. 1055 - 1062
Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Foot-and-Mouth Disease - transmission | Humans | Foot-and-Mouth Disease - epidemiology | Probability | Influenza, Human - epidemiology | Disease Outbreaks - statistics & numerical data | Influenza, Human - transmission | Models, Statistical | Phylogeny | Disease Transmission, Infectious - prevention & control | Foot-and-Mouth Disease - virology | Likelihood Functions | Animals | Disease Transmission, Infectious - statistics & numerical data | Host-Pathogen Interactions - genetics | Computer Simulation | Disease Outbreaks - prevention & control | Influenza, Human - virology | Models, Genetic | Mutation | Phylogenetic trees | Genetic transformation | Research | Epidemiology | Phylogenetics | Pathogens | Infectious diseases | Foot & mouth disease | Index Medicus | molecular epidemiology | transmission tree | foot-and-mouth disease | Investigations | Markov chain Monte Carlo (MCMC)
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8. Full Text Gene Trees in Species Trees
by Wayne P. Maddison
Systematic biology, ISSN 1063-5157, 9/1997, Volume 46, Issue 3, pp. 523 - 536
Biological taxonomies | Extinct species | Genes | Phylogenetics | Evolutionary genetics | Genetic loci | Gene duplication | Phylogeny | Species | Speciation | Lineage sorting | Biogeography | Hybridization | Coevolution | Gene trees | Species trees | Tree reconciliation | Horizontal transfer | Gene genealogy | Parsimony | Species concepts | Evolution | Coalescence
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9. Full Text Using functional traits and phylogenetic trees to examine the assembly of tropical tree communities
by Christopher Baraloto and Olivier J. Hardy and C. E. Timothy Paine and Kyle G. Dexter and Corinne Cruaud and Luke T. Dunning and Mailyn-Adriana Gonzalez and Jean-François Molino and Daniel Sabatier and Vincent Savolainen and Jerome Chave
The Journal of ecology, ISSN 0022-0477, 5/2012, Volume 100, Issue 3, pp. 690 - 701
Community structure | Biological taxonomies | Determinants of plant community diversity and structure | Synecology | Ecological genetics | Communities | Plant ecology | Forest ecology | Phylogenetics | Human ecology | Phenotypic traits | French Guiana | functional traits | tropical forests | environmental filtering | limiting similarity | competition | niche | determinants of plant community diversity and structure | phylogenetic signal | Competition | Phylogenetic signal | Limiting similarity | Environmental filtering | Niche | Functional traits | Tropical forests | Environmental Sciences & Ecology | Ecology | Life Sciences & Biomedicine | Plant Sciences | Science & Technology | Fundamental and applied biological sciences. Psychology | General forest ecology | General aspects | Animal, plant and microbial ecology | Forestry | Biological and medical sciences | Animal and plant ecology | Generalities. Production, biomass. Quality of wood and forest products. General forest ecology | Nucleotide sequencing | Universities and colleges | Evolutionary biology | DNA | DNA sequencing | Trees | Plastids | Deoxyribonucleic acid--DNA | Life Sciences | Agricultural sciences
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