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1. Full Text Spatially and genetically distinct control of seed germination by phytochromes A and B
by Lee, Keun Pyo and Piskurewicz, Urszula and Turečková, Veronika and Carat, Solenne and Chappuis, Richard and Strnad, Miroslav and Fankhauser, Christian and Lopez-Molina, Luis
Genes and Development, ISSN 0890-9369, 09/2012, Volume 26, Issue 17, pp. 1984 - 1996
Phytochromes phyB and phyA mediate a remarkable developmental switch whereby, early upon seed imbibition, canopy light prevents phyB-dependent germination,... 
Abscisic acid | ABI5 | PhyB | PhyA | DELLA factors | Seed germination | ARABIDOPSIS-THALIANA | PROTEIN | PIL5 | GIBBERELLIN | DEVELOPMENTAL BIOLOGY | seed germination | CELL BIOLOGY | phyA | ENDOSPERM | EMBRYO | phyB | ABI3 | GROWTH | GENETICS & HEREDITY | abscisic acid | ABSCISIC-ACID | EXPRESSION | Endosperm - metabolism | Phytochrome A - metabolism | Promoter Regions, Genetic | Seeds - metabolism | Signal Transduction | Phytochrome B - metabolism | Germination | Arabidopsis - embryology | Arabidopsis - metabolism | Arabidopsis - genetics | Arabidopsis Proteins - metabolism | Seeds - embryology | Gene Expression Regulation, Plant | Abscisic Acid - metabolism | Plant Growth Regulators - metabolism | Plant embryology | Genetic aspects | Research | Plant physiology | Research Paper
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2. Full Text Genome organization in Arabidopsis thaliana: a survey for genes involved in isoprenoid and chlorophyll metabolism
by Lange, B Markus and Ghassemian, Majid
Plant Molecular Biology, ISSN 0167-4412, 4/2003, Volume 51, Issue 6, pp. 925 - 948
The isoprenoid biosynthetic pathway provides intermediates for the synthesis of a multitude of natural products which serve numerous biochemical functions in... 
Life Sciences | Biochemistry, general | Plant Pathology | methylerythritol | Arabidopsis | chlorophyll | Plant Sciences | mevalonate | deoxyxylulose | isoprenoid | Methylerythritol | Chlorophyll | Mevalonate | Isoprenoid | Deoxyxylulose | CATALYZES 3 STEPS | BIOCHEMISTRY & MOLECULAR BIOLOGY | ESCHERICHIA-COLI | FARNESYL-DIPHOSPHATE SYNTHASE | ABSCISIC-ACID BIOSYNTHESIS | SYNECHOCYSTIS SP PCC-6803 | PLANT SCIENCES | RAB GERANYLGERANYL TRANSFERASE | NADPH-PROTOCHLOROPHYLLIDE OXIDOREDUCTASE | FUNCTIONAL EXPRESSION | PHYTOCHROME-CHROMOPHORE BIOSYNTHESIS | MOLECULAR-CLONING | Sesquiterpenes - metabolism | Ubiquinone - metabolism | Plastoquinone - metabolism | Vitamin K 1 - metabolism | Protein Prenylation | Terpenes - metabolism | Gibberellins - metabolism | Plastids - metabolism | Abscisic Acid - metabolism | Cholestanols - metabolism | Steroids, Heterocyclic - metabolism | Brassinosteroids | Chromosome Mapping | Mitochondria - metabolism | Chlorophyll - metabolism | Genome, Plant | Tocopherols - metabolism | Arabidopsis - metabolism | Arabidopsis - genetics | Plastids - enzymology | Genes, Plant - genetics | Carotenoids - metabolism | Monoterpenes - metabolism | Phytosterols - metabolism | Dimethylallyltranstransferase - metabolism | Cytosol - metabolism | Chromosomes, Plant - genetics | Bacteria | Flowers & plants | Metabolism | Natural products
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3. Full Text Photoreceptor Regulation of CONSTANS Protein in Photoperiodic Flowering
by Federico Valverde and Aidyn Mouradov and Wim Soppe and Dean Ravenscroft and Alon Samach and George Coupland
Science, ISSN 0036-8075, 2/2004, Volume 303, Issue 5660, pp. 1003 - 1006
Many plants flower in response to seasonal fluctuations in day length. The CONSTANS (CO) gene of Arabidopsis promotes flowering in long days. Flowering is... 
Messenger RNA | Plant growth regulators | Luminescence | Antibodies | Photoreceptors | Flowering | Reports | Gene expression regulation | Photoperiod | Plants | Circadian rhythm | CIRCADIAN CLOCK | ROLES | PHYTOCHROME-A | MULTIDISCIPLINARY SCIENCES | LIGHT | GENES | PLANTS | TIME | FLORAL INDUCTION | EXPRESSION | ARABIDOPSIS PHOTORECEPTORS | Darkness | Arabidopsis - physiology | Photosynthetic Reaction Center Complex Proteins - metabolism | Arabidopsis - growth & development | Ubiquitin - metabolism | Multienzyme Complexes - metabolism | Proteasome Endopeptidase Complex | RNA, Messenger - metabolism | RNA, Plant - metabolism | Recombinant Fusion Proteins - metabolism | Arabidopsis Proteins - metabolism | DNA-Binding Proteins - metabolism | Photoreceptor Cells | Cell Nucleus - metabolism | Cysteine Endopeptidases - metabolism | Photosynthetic Reaction Center Complex Proteins - genetics | Light | Phytochrome - metabolism | Plants, Genetically Modified | Gene Expression Regulation, Plant | Transcription, Genetic | Phytochrome - genetics | Drosophila Proteins | Arabidopsis Proteins - genetics | Flavoproteins - metabolism | Flavoproteins - genetics | Phytochrome B | RNA, Messenger - genetics | Receptors, G-Protein-Coupled | Phytochrome A | RNA, Plant - genetics | Transcription Factors - genetics | Circadian Rhythm | DNA-Binding Proteins - genetics | Flowers - growth & development | Arabidopsis - genetics | Transcription Factors - metabolism | Cryptochromes | Mutation | Eye Proteins | Photoreceptor Cells, Invertebrate | Plants, Flowering of | Genetic aspects | Proteins | Flowers & plants | Genes
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4. Full Text Contrasting growth responses in lamina and petiole during neighbor detection depend on differential auxin responsiveness rather than different auxin levels
by Mieke de Wit and Karin Ljung and Christian Fankhauser and Sveriges lantbruksuniversitet
New Phytologist, ISSN 0028-646X, 10/2015, Volume 208, Issue 1, pp. 198 - 209
Foliar shade triggers rapid growth of specific structures that facilitate access of the plant to direct sunlight. In leaves of many plant species, this growth... 
Leaves | Receptors | Hypocotyls | Petioles | Full Papers | Auxins | Biosynthesis | Gene expression regulation | Plants | Plant cells | Seedlings | PHYTOCHROME INTERACTING FACTOR | neighbor detection | auxin | XYLOGLUCAN ENDOTRANSGLUCOSYLASE | shade avoidance response | leaf growth | PIF | XTH | HYDROLASE | Leaf growth | Auxin | PHYTOCHROME INTERACTING FACTOR (PIF) | XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE (XTH) | Shade avoidance response | Neighbor detection | TRANSCRIPTION FACTORS | ARABIDOPSIS-THALIANA | SHADE AVOIDANCE-RESPONSE | NATURAL-ENVIRONMENT | RED-LIGHT | PHYSIOLOGICAL-RESPONSES | PLANT DEVELOPMENT | PLANT SCIENCES | PHYTOCHROME-INTERACTING FACTORS | GENE FAMILY | XYLOGLUCAN ENDOTRANSGLUCOSYLASE/ HYDROLASE (XTH) | CELL-WALL CONSTRUCTION | Arabidopsis Proteins - metabolism | DNA-Binding Proteins - metabolism | Darkness | Arabidopsis - physiology | Gene Expression | Indoleacetic Acids - metabolism | Plant Leaves - metabolism | Arabidopsis - growth & development | Plant Leaves - growth & development | Light | Plant Leaves - physiology | Arabidopsis - metabolism | Chromophores | Gene expression | Growth | Analysis | Phytochrome | Plant growth | Pharmacology | Hormones | Tissues | Detection | Elongation | Shade | Developmental Biology | Utvecklingsbiologi
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5. Full Text Lipid anchoring of Arabidopsis phototropin 1 to assess the functional significance of receptor internalization: should I stay or should I go?
by Tobias Preuten and Lisa Blackwood and John M. Christie and Christian Fankhauser
New Phytologist, ISSN 0028-646X, 5/2015, Volume 206, Issue 3, pp. 1038 - 1050
The phototropin 1 (phot1) blue light receptor mediates a number of adaptive responses, including phototropism, that generally serve to optimize photosynthetic... 
Full papers | receptor turnover | farnesylation | myristoylation | subcellular localization | phototropin 1 (phot1) | internalization | phototropism | rabidopsis thaliana | Arabidopsis thaliana | Farnesylation | Internalization | Phototropism | Subcellular localization | Phototropin 1 (phot1) | Myristoylation | Receptor turnover | RED-LIGHT | SUBCELLULAR-LOCALIZATION | PRIMARY STEP | BLUE-LIGHT | PLANT SCIENCES | UV-B | STRUCTURAL BASIS | HIGHER-PLANTS | HYPOCOTYL PHOTOTROPISM | PHYTOCHROME | SIGNAL TRANSDUCER | Arabidopsis Proteins - genetics | Arabidopsis Proteins - physiology | Phototropins - physiology | Arabidopsis - chemistry | Plants, Genetically Modified - radiation effects | Signal Transduction | Phosphoproteins - genetics | Lipid-Linked Proteins - physiology | Phosphoproteins - metabolism | Arabidopsis - metabolism | Arabidopsis - genetics | Arabidopsis Proteins - metabolism | Phototropins - genetics | Phototropins - metabolism | Arabidopsis - radiation effects | Plants, Genetically Modified - metabolism | Cell Membrane - metabolism | Phosphoproteins - physiology | Phototropism - genetics | Genetic engineering | Photosynthesis | Analysis
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6. Full Text Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling
by Hornitschek, Patricia and Kohnen, Markus V and Lorrain, Séverine and Rougemont, Jacques and Ljung, Karin and López‐Vidriero, Irene and Franco‐Zorrilla, José M and Solano, Roberto and Trevisan, Martine and Pradervand, Sylvain and Xenarios, Ioannis and Fankhauser, Christian and Sveriges lantbruksuniversitet
The Plant Journal, ISSN 0960-7412, 09/2012, Volume 71, Issue 5, pp. 699 - 711
Plant growth is strongly influenced by the presence of neighbors that compete for light resources. In response to vegetational shading shade‐intolerant plants... 
Arabidopsis thaliana | phytochrome | shade avoidance | auxin | ChIP sequencing | phytochrome‐interacting factor | phytochrome-interacting factor | ARABIDOPSIS-THALIANA | HIGH-TEMPERATURE | GENOMIC ANALYSIS | BHLH TRANSCRIPTION FACTORS | NEGATIVE REGULATOR | PLANT SCIENCES | CIRCADIAN CLOCK | SHADE-AVOIDANCE RESPONSES | BIOSYNTHESIS | PLANT-GROWTH | PROTEIN-BINDING MICROARRAYS | Arabidopsis Proteins - genetics | Basic Helix-Loop-Helix Transcription Factors - genetics | Indoleacetic Acids - metabolism | Arabidopsis - growth & development | Genes, Plant | Seedlings - growth & development | Arabidopsis - metabolism | Arabidopsis - genetics | Arabidopsis Proteins - metabolism | Basic Helix-Loop-Helix Transcription Factors - metabolism | Light | Gene Expression Regulation, Plant | Seedlings - metabolism | Anopheles | Chromatin | Plant physiology | Growth | Analysis | Genes | Genomics | Plant genetics | Phytochrome | Chromophores | Universities and colleges | Genetic transcription | Biosynthesis | Hormones | Plant growth | Gene expression | Binding sites | Developmental Biology | Utvecklingsbiologi
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7. Full Text Full establishment of arbuscular mycorrhizal symbiosis in rice occurs independently of enzymatic jasmonate biosynthesis
by Gutjahr, Caroline and Siegler, Heike and Haga, Ken and Iino, Moritoshi and Paszkowski, Uta
PLoS ONE, ISSN 1932-6203, 04/2015, Volume 10, Issue 4, p. e0123422
Development of the mutualistic arbuscular mycorrhiza (AM) symbiosis between most land plants and fungi of the Glomeromycota is regulated by phytohormones. The... 
ACID | PATHWAY | MULTIDISCIPLINARY SCIENCES | PLANT DEFENSE | ROOTS | SALICYLATE | COLONIZATION | INDUCTION | ALLENE-OXIDE-CYCLASE | IDENTIFICATION | PHYTOCHROME | Genes, Plant | Oryza - metabolism | Symbiosis - physiology | Symbiosis - genetics | Oxylipins - metabolism | Plant Proteins - genetics | Intramolecular Oxidoreductases - genetics | Oryza - genetics | Oryza - microbiology | Mycorrhizae - metabolism | Cyclopentanes - metabolism | Plant Proteins - metabolism | Mutation | Intramolecular Oxidoreductases - metabolism | Plant Growth Regulators - metabolism | Glomeromycota - metabolism | Fungi | Enzymes | Mycobacterium | Gibberellins | Mycobacteria | Physiological aspects | Biosynthesis | Research | Symbiosis | Genes | Roots | Alfalfa | Gene expression | Photomorphogenesis | Morphology | Arbuscular mycorrhizas | Plant sciences | Herbivores | Tomatoes | Molecular biology | Colonization | Jasmonic acid | Rice
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8. Full Text Regulation of hormone metabolism in Arabidopsis seeds: phytochrome regulation of abscisic acid metabolism and abscisic acid regulation of gibberellin metabolism
by Seo, Mitsunori and Hanada, Atsushi and Kuwahara, Ayuko and Endo, Akira and Okamoto, Masanori and Yamauchi, Yukika and North, Helen and Marion‐Poll, Annie and Sun, Tai‐ping and Koshiba, Tomokazu and Kamiya, Yuji and Yamaguchi, Shinjiro and Nambara, Eiji
The Plant Journal, ISSN 0960-7412, 11/2006, Volume 48, Issue 3, pp. 354 - 366
In a wide range of plant species, seed germination is regulated antagonistically by two plant hormones, abscisic acid (ABA) and gibberellin (GA). In the... 
seed development | phytochrome | abscisic acid | gibberellin | seed germination | hormone metabolism | Abscisic acid | Gibberellin | Hormone metabolism | Seed development | Phytochrome | Seed germination | INDUCTION | GERMINATION | DORMANCY | PLANT SCIENCES | DEFICIENT MUTANTS | PHOTOPERIOD | MAINTENANCE | BIOSYNTHESIS | GENES | THALIANA L HEYNH | EXPRESSION | Arabidopsis - genetics | Seeds - metabolism | Gibberellins - biosynthesis | Gibberellins - metabolism | Base Sequence | Germination | Phytochrome - metabolism | Arabidopsis - embryology | Abscisic Acid - metabolism | DNA Primers | Plant Growth Regulators - metabolism | Reverse Transcriptase Polymerase Chain Reaction | Physiological aspects | Seeds | Hormones | Arabidopsis | Light | Flowers & plants | Mutation | Metabolism | Gene expression
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9. Full Text Auxin Controls Arabidopsis Adventitious Root Initiation by Regulating Jasmonic Acid Homeostasis
by Laurent Gutierrez and Gaëlle Mongelard and Kristýna Floková and Daniel I. Păcurar and Ondřej Novák and Paul Staswick and Mariusz Kowalczyk and Monica Păcurar and Hervé Demailly and Gaia Geiss and Catherine Bellini and Umeå Plant Science Centre (UPSC) and Umeå universitet and Teknisk-naturvetenskapliga fakulteten
The Plant Cell, ISSN 1040-4651, 6/2012, Volume 24, Issue 6, pp. 2515 - 2527
Vegetative shoot-based propagation of plants, including mass propagation of elite genotypes, is dependent on the development of shoot-borne roots, which are... 
Enzymes | Hypocotyls | Genes | Auxins | Gene expression regulation | Adventitious roots | Plants | Insulin antibodies | Plant cells | Seedlings | CONJUGATES AMINO-ACIDS | BIOCHEMISTRY & MOLECULAR BIOLOGY | INDOLE-3-ACETIC ACIDS | WOUND RESPONSE | PLANT SCIENCES | CELL BIOLOGY | RESPONSE FACTORS | ENZYME | HYPOCOTYL | PHYTOCHROME-B | GENE-EXPRESSION | GH3 GENE | MALE-STERILE MUTANT | Arabidopsis Proteins - genetics | Plant Roots - metabolism | Indoleacetic Acids - metabolism | Arabidopsis - growth & development | Hypocotyl - genetics | Ligases - genetics | Homeostasis | Ligases - metabolism | Transcription Factors - genetics | DNA-Binding Proteins - genetics | Arabidopsis - metabolism | Arabidopsis - genetics | Arabidopsis Proteins - metabolism | DNA-Binding Proteins - metabolism | Transcription Factors - metabolism | Amino Acids - metabolism | Oxylipins - metabolism | Gene Expression Regulation, Plant | Cyclopentanes - metabolism | Hypocotyl - metabolism | Mutation | Plant Roots - growth & development | Auxin | Arabidopsis | Physiological aspects | Roots (Botany) | Research | Jasmonates | Health aspects | Life Sciences | Agricultural sciences | Biological Sciences | Biochemistry and Molecular Biology | Naturvetenskap | Natural Sciences | Biokemi och molekylärbiologi | Biologiska vetenskaper
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10. Full Text A molecular framework for light and gibberellin control of cell elongation
by De Lucas, Miguel and Davière, Jean-Michel and Rodríguez-Falcón, Mariana and Pontin, Mariela and Iglesias-Pedraz, Juan Manuel and Lorrain, Séverine and Fankhauser, Christian and Blázquez, Miguel Angel and Titarenko, Elena and Prat, Salomé
Nature, ISSN 0028-0836, 01/2008, Volume 451, Issue 7177, pp. 480 - 484
Cell elongation during seedling development is antagonistically regulated by light and gibberellins (GAs)(1,2). Light induces photomorphogenesis, leading to... 
SIGNAL-TRANSDUCTION | TRANSCRIPTION FACTORS | ARABIDOPSIS-THALIANA | PROTEIN | GENE | MULTIDISCIPLINARY SCIENCES | PHYTOCHROME-B | PLANTS | RGA | INDUCED DEGRADATION | PHOTOMORPHOGENESIS | Hypocotyl - genetics | Cell Size - radiation effects | Cell Shape - radiation effects | Arabidopsis Proteins - metabolism | Arabidopsis - radiation effects | Basic Helix-Loop-Helix Transcription Factors - metabolism | Light | Hypocotyl - metabolism | Phytochrome B - genetics | Nuclear Proteins - genetics | Arabidopsis Proteins - genetics | Arabidopsis - drug effects | Basic Helix-Loop-Helix Transcription Factors - genetics | Phytochrome B - metabolism | Tobacco - metabolism | Arabidopsis - cytology | Cell Size - drug effects | Hypocotyl - growth & development | Nuclear Proteins - metabolism | DNA, Plant - metabolism | Nuclear Proteins - chemistry | Arabidopsis - metabolism | Cell Shape - drug effects | Triazoles - pharmacology | Two-Hybrid System Techniques | Arabidopsis Proteins - chemistry | Plant Leaves - metabolism | Signal Transduction - drug effects | Gibberellins - pharmacology | Protein Binding | Basic Helix-Loop-Helix Transcription Factors - chemistry | Seedlings - metabolism | Gibberellins | Development | Causes of | Chemical properties | Plants | Research | Seedlings | Photomorphogenesis | Cellular biology | Molecular biology | Deoxyribonucleic acid | DNA | Botany
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11. Full Text UV-B Perceived by the UVR8 Photoreceptor Inhibits Plant Thermomorphogenesis
by Hayes, Scott and Sharma, Ashutosh and Fraser, Donald P and Trevisan, Martine and Cragg-Barber, C. Kester and Tavridou, Eleni and Fankhauser, Christian and Jenkins, Gareth I and Franklin, Keara A
Current Biology, ISSN 0960-9822, 01/2017, Volume 27, Issue 1, pp. 120 - 127
Small increases in ambient temperature can elicit striking effects on plant architecture, collectively termed thermomorphogenesis [ ]. In , these include... 
UVR8 | UV-B | PIF4 | auxin | Arabidopsis | HFR1 | hypocotyl | high temperature | CIRCADIAN CLOCK | RESPONSES | ARABIDOPSIS-THALIANA | PROTEIN | AUXIN BIOSYNTHESIS | ELONGATION | BIOCHEMISTRY & MOLECULAR BIOLOGY | HIGH-TEMPERATURE | GROWTH | LIGHT | SHADE AVOIDANCE | CELL BIOLOGY | Arabidopsis Proteins - genetics | Gene Expression Regulation, Plant - radiation effects | Basic Helix-Loop-Helix Transcription Factors - genetics | Chromosomal Proteins, Non-Histone - metabolism | Arabidopsis - growth & development | Ubiquitin-Protein Ligases - metabolism | Hot Temperature | Ultraviolet Rays - adverse effects | Arabidopsis - metabolism | Chromosomal Proteins, Non-Histone - genetics | Arabidopsis Proteins - metabolism | Arabidopsis - radiation effects | Basic Helix-Loop-Helix Transcription Factors - metabolism | Plant Stems - metabolism | Plant Stems - radiation effects | Ubiquitin-Protein Ligases - genetics | Plant Stems - growth & development | Arabidopsis thaliana | Auxin | Plant physiology | Ligases | Phytochrome | Heat shock proteins | Chromophores | Acetic acid | Organic acids | Report
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12. Full Text Arabidopsis HEMERA/pTAC12 Initiates Photomorphogenesis by Phytochromes
by Chen, Meng and Galvão, Rafaelo M and Li, Meina and Burger, Brian and Bugea, Jane and Bolado, Jack and Chory, Joanne
Cell, ISSN 0092-8674, 06/2010, Volume 141, Issue 7, pp. 1230 - 1240
Light plays a profound role in plant development, yet how photoreceptor excitation directs phenotypic plasticity remains elusive. One of the earliest effects... 
CELLBIO | SIGNALING | Signaling | Cellbio | INTERACTING FACTORS | NUCLEAR-BODIES | LIGHT CONTROL | DNA | BIOCHEMISTRY & MOLECULAR BIOLOGY | PROTEASOME | DEGRADATION | BHLH TRANSCRIPTION FACTORS | BINDING PROTEIN | EXPRESSION | E3 UBIQUITIN LIGASE | CELL BIOLOGY | Phytochrome A - metabolism | Green Fluorescent Proteins - analysis | Seeds - metabolism | Signal Transduction | Arabidopsis - growth & development | Phytochrome B - metabolism | Arabidopsis - cytology | Nuclear Proteins - metabolism | Chloroplasts - metabolism | Arabidopsis - metabolism | Arabidopsis Proteins - metabolism | DNA-Binding Proteins - metabolism | Transcription Factors - metabolism | Microscopy, Confocal | Cell Nucleus - metabolism | Light | Saccharomyces cerevisiae Proteins - metabolism | Arabidopsis thaliana | Chromophores | Proteolysis | Phytochrome
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