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index medicus (98) 98
microbiology (92) 92
planctomycetales - genetics (77) 77
bacteria (62) 62
phylogeny (60) 60
rna, ribosomal, 16s - genetics (49) 49
planctomycetales - classification (43) 43
diversity (40) 40
planctomycetales - metabolism (35) 35
planctomycetales - isolation & purification (34) 34
sequence analysis, dna (34) 34
planctomycetes (33) 33
molecular sequence data (32) 32
bacteria - genetics (31) 31
dna, bacterial - genetics (29) 29
bacteria - classification (27) 27
biotechnology & applied microbiology (27) 27
order planctomycetales (25) 25
oxidation-reduction (25) 25
analysis (24) 24
budding bacteria (24) 24
planctomycetales (24) 24
research (23) 23
microorganisms (22) 22
pirellula (21) 21
evolution (20) 20
microbial ecology (20) 20
genomics (19) 19
physiological aspects (19) 19
sp-nov (19) 19
anaerobic ammonium oxidation (18) 18
escherichia-coli (18) 18
soil microbiology (18) 18
anaerobiosis (17) 17
identification (17) 17
bacterial proteins - genetics (16) 16
genome, bacterial (16) 16
sequence (16) 16
base sequence (15) 15
multidisciplinary sciences (15) 15
oxidation (15) 15
anammox (14) 14
bacteria - isolation & purification (14) 14
ecology (14) 14
gemmata-obscuriglobus (14) 14
genes (14) 14
life sciences (14) 14
nitrogen (14) 14
nitrogen - metabolism (14) 14
rna (14) 14
water microbiology (14) 14
16s ribosomal-rna (13) 13
bacterial proteins - metabolism (13) 13
gen. nov (13) 13
biochemistry & molecular biology (12) 12
biodiversity (12) 12
genetics & heredity (12) 12
planctomycetales - ultrastructure (12) 12
polymerase chain reaction (12) 12
research article (12) 12
ammonium compounds - metabolism (11) 11
bacterial typing techniques (11) 11
dna, ribosomal - genetics (11) 11
environmental sciences (11) 11
geologic sediments - microbiology (11) 11
proteins (11) 11
base composition (10) 10
nitrification (10) 10
pirella (10) 10
planctomycetales - enzymology (10) 10
planctomycetales - growth & development (10) 10
planctomycetales - physiology (10) 10
quaternary ammonium compounds - metabolism (10) 10
sewage - microbiology (10) 10
animals (9) 9
article (9) 9
genes, rrna (9) 9
genomes (9) 9
science (9) 9
sediments (9) 9
abundance (8) 8
bacteria - metabolism (8) 8
biofilm (8) 8
biological evolution (8) 8
cluster analysis (8) 8
dna (8) 8
dna, bacterial - chemistry (8) 8
ecosystem (8) 8
genetics (8) 8
genome, bacterial - genetics (8) 8
in situ hybridization, fluorescence (8) 8
medicine (8) 8
phylogenetics (8) 8
reactor (8) 8
verrucomicrobia (8) 8
water (8) 8
ammonia (7) 7
ammonia - metabolism (7) 7
ammonium (7) 7
anammox bacteria (7) 7
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1. Full Text Considerations on bacterial nucleoids
by Feijoo-Siota, Lucía and Rama, José Luis R and Sánchez-Pérez, Angeles and Villa, Tomás G
Applied Microbiology and Biotechnology, ISSN 0175-7598, 7/2017, Volume 101, Issue 14, pp. 5591 - 5602
The classic genome organization of the bacterial chromosome is normally envisaged with all its genetic markers linked, thus forming a closed genetic circle of... 
Life Sciences | Biotechnology | Nucleoid | Borrelia | Microbiology | Planctomycetes | Microbial Genetics and Genomics | Streptomyces | Linear bacterial chromosomes | Nucleoid-associated proteins | LINEAR CHROMOSOME | BORRELIA-BURGDORFERI | PEPTIDOGLYCAN CELL-WALL | DNA-BINDING PROTEIN | SPATIAL-ORGANIZATION | ESCHERICHIA-COLI CHROMOSOME | GEMMATA-OBSCURIGLOBUS | COMPLETE GENOME SEQUENCE | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | GENE-EXPRESSION | PROTEIN H-NS | Bacteria - metabolism | Genome, Bacterial | Streptomyces - genetics | Bacterial Proteins - genetics | Borrelia - genetics | Chromosomes, Bacterial | DNA-Binding Proteins - genetics | Bacteria - genetics | DNA-Binding Proteins - metabolism | DNA, Bacterial - genetics | Eukaryota - genetics | Planctomycetales - genetics | Escherichia coli - genetics | Physiological aspects | Genetic aspects | Nucleotide sequencing | Gene expression | Observations | Chromosomes | Microbial colonies | Methods | DNA sequencing | Proteins | Microorganisms | Membranes | Genetic markers | Nucleoids | Markers | Bacteria | Genomes | Corrugation | Phytoplasma | Deoxyribonucleic acid--DNA
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2. Full Text Planctomycetes and eukaryotes: A case of analogy not homology
by McInerney, James O and Martin, William F and Koonin, Eugene V and Allen, John F and Galperin, Michael Y and Lane, Nick and Archibald, John M and Embley, T. Martin
BioEssays, ISSN 0265-9247, 11/2011, Volume 33, Issue 11, pp. 810 - 817
Planctomycetes, Verrucomicrobia and Chlamydia are prokaryotic phyla, sometimes grouped together as the PVC superphylum of eubacteria. Some PVC species possess... 
eukaryote origins | Planctomycetes | phylogeny reconstruction | horizontal gene transfer | Eukaryote origins | Phylogeny reconstruction | Horizontal gene transfer | PROTEIN | BIOCHEMISTRY & MOLECULAR BIOLOGY | MITOCHONDRIA | PSI-BLAST | EVOLUTION | ARCHAEA | COMPARATIVE GENOMICS | HYPOTHESIS | BIOLOGY | ARCHAEBACTERIAL ORIGIN | DIVERSITY | HORIZONTAL GENE-TRANSFER | Nuclear Envelope - physiology | Eukaryota - classification | Phylogeny | Planctomycetales - classification | Cell Nucleus - physiology | Verrucomicrobia - physiology | Chlamydia - physiology | Mitochondria - genetics | Planctomycetales - cytology | Verrucomicrobia - genetics | Eukaryota - cytology | Eukaryota - physiology | Chlamydia - classification | Chlamydia - genetics | Verrucomicrobia - classification | Bacterial Proteins - genetics | Endoplasmic Reticulum - physiology | Gene Transfer, Horizontal | Bacterial Proteins - physiology | Verrucomicrobia - cytology | Planctomycetales - physiology | Biological Evolution | Chlamydia - cytology | Eukaryota - genetics | Planctomycetales - genetics | Mitochondria - physiology | Eukaryotes | Genetic transformation | Practice | Physiological aspects | Research | Biologists | Marine bacteria | Prokaryotes
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3. Full Text Effects of isoflavone-enriched feed on the rumen microbiota in dairy cows
by Kasparovska, Jitka and Pecinkova, Martina and Dadakova, Katerina and Krizova, Ludmila and Hadrova, Sylvie and Lexa, Matej and Lochman, Jan and Kasparovsky, Tomas
PLoS ONE, ISSN 1932-6203, 04/2016, Volume 11, Issue 4, p. e0154642
In this study, we compared the effects of two diets containing different isoflavone concentrations on the isoflavone transfer from feed into milk and on the... 
RED-CLOVER | BOVINE-MILK | INTESTINAL MICROBIOTA | MULTIDISCIPLINARY SCIENCES | ESTROGEN-RECEPTOR-ALPHA | PHYTO-ESTROGENS | GRASS SILAGES | RIBOSOMAL-RNA | DIETARY PHYTOESTROGENS | RUMINAL PH | C-RING | Milk - chemistry | Lactation | Isoflavones - pharmacology | Burkholderiaceae - genetics | Firmicutes - genetics | Poaceae | Animal Nutritional Physiological Phenomena - drug effects | Microbiota | Animal Feed - analysis | Cattle | Silage | Bacteria - classification | Female | Rumen - microbiology | Diet - veterinary | Bacteroidetes - isolation & purification | Betaproteobacteria - isolation & purification | Zea mays | Firmicutes - isolation & purification | Plant Extracts | Burkholderiaceae - isolation & purification | Bacteria - genetics | Soybeans - metabolism | Betaproteobacteria - genetics | Bacteria - isolation & purification | Animals | Planctomycetales - genetics | Planctomycetales - isolation & purification | RNA, Ribosomal, 16S - genetics | Bacteroidetes - genetics | Dietary Supplements | Microbiota (Symbiotic organisms) | Health aspects | Analysis | Dairy cattle | Isoflavones | rRNA 16S | Ecosystems | Microbiomes | Science | Biochemistry | Maize | Multidimensional scaling | Composition effects | Animal lactation | Microorganisms | Cow's milk | Red clover | Metabolites | Soy products | Bacteria | Milk | Statistical analysis | Dairy farming | Corn | Rumen | Metabolism | Fatty acids | Studies | Diet | Scaling | Feeds
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4. Full Text Woody plant encroachment, and its removal, impact bacterial and fungal communities across stream and terrestrial habitats in a tallgrass prairie ecosystem
by Veach, Allison M and Dodds, Walter K and Jumpponen, Ari
FEMS Microbiology Ecology, ISSN 0168-6496, 10/2015, Volume 91, Issue 10, p. fiv109
Woody plant encroachment has become a global threat to grasslands and has caused declines in aboveground richness and changes in ecosystem function; yet we... 
Fungal communities | Woody encroachment | Bacterial communities | Land-water interface | Tallgrass prairie | GRASSLAND | PRIMERS | SHRUB ENCROACHMENT | MICROBIOLOGY | RESTORATION | tallgrass prairie | bacterial communities | fungal communities | land-water interface | NITROGEN DEPOSITION | woody encroachment | EXPANSION | SPECIES RICHNESS | SOIL BACTERIAL | DIVERSITY | RIPARIAN VEGETATION | Chytridiomycota - isolation & purification | Cyanobacteria - genetics | Grassland | Ascomycota - isolation & purification | Forests | Glomeromycota - isolation & purification | Soil Microbiology | Fungi - isolation & purification | Glomeromycota - genetics | Bacteria - genetics | Basidiomycota - isolation & purification | Fungi - genetics | Cyanobacteria - isolation & purification | Bacteria - isolation & purification | Planctomycetales - genetics | Ascomycota - genetics | Basidiomycota - genetics | Planctomycetales - isolation & purification | RNA, Ribosomal, 16S - genetics | Rivers - microbiology | Chytridiomycota - genetics | Water Microbiology | Water treatment | Microbial activity | rRNA 16S | Ecosystems | Ordination | Terrestrial environments | Prairies | Environmental changes | Encroachment | Fungi | Microorganisms | Restoration | Moisture content | Water content | Cyanobacteria | Soil water | Bacteria | Streams | Community composition | Grasslands | Landscape | Abundance | Woody plants | Sediments | Interfaces | Soils | Relative abundance | Environmental restoration
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5. Full Text Microbial diversity in deep-sea sediment from the cobalt-rich crust deposit region in the Pacific Ocean
by Liao, Li and Xu, Xue-Wei and Jiang, Xia-Wei and Wang, Chun-Sheng and Zhang, Dong-Sheng and Ni, Jian-Yu and Wu, Min
FEMS Microbiology Ecology, ISSN 0168-6496, 12/2011, Volume 78, Issue 3, pp. 565 - 585
Abstract Cobalt-rich crusts are important metallic mineral resources with great economic potential, usually distributed on seamounts located in the Pacific... 
diversity | bacteria | cobalt‐rich crust | archaea | 16S rRNA gene | OXIDATION | PHYLOGENY | TOLERANCE | BASALTS | MICROBIOLOGY | cobalt-rich crust | ARCHAEAL COMMUNITIES | LIBRARIES | BACTERIAL DIVERSITY | SP-NOV | STENOTROPHOMONAS | 16S RIBOSOMAL-RNA | Proteobacteria - classification | Phylogeny | Biodiversity | Planctomycetales - classification | Archaea - classification | Proteobacteria - genetics | Geologic Sediments - microbiology | Bacteria - classification | Geologic Sediments - chemistry | Acidobacteria - genetics | Acidobacteria - isolation & purification | DNA, Archaeal - genetics | Sulfur - metabolism | Nitrogen - metabolism | Seawater - microbiology | Gene Library | Oxidation-Reduction | Archaea - isolation & purification | Bacteria - genetics | Sequence Analysis, DNA | Bacteria - isolation & purification | Metals - metabolism | DNA, Bacterial - genetics | Planctomycetales - genetics | Proteobacteria - isolation & purification | Acidobacteria - classification | Planctomycetales - isolation & purification | RNA, Ribosomal, 16S - genetics | Archaea - genetics | Pacific Ocean | Cobalt - chemistry | Cloning
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6. Full Text Assembly of a complete genome sequence for Gemmata obscuriglobus reveals a novel prokaryotic rRNA operon gene architecture
by Franke, Josef D and Blomberg, Wilson R and Todd, Robert T and Thomas, Robert W and Selmecki, Anna M
Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology, ISSN 0003-6072, 11/2018, Volume 111, Issue 11, pp. 2095 - 2105
Gemmata obscuriglobus is a Gram-negative bacterium with several intriguing biological features. Here, we present a complete, de novo whole genome assembly for... 
Planctomycete | Phylogenetics | De novo genome assembly | rrn operon | PVC superphylum | STRAINS | PHYLOGENY | BACTERIA | TRANSCRIPTION | MICROBIOLOGY | PROTEIN-UPTAKE | 16S | ALIGNMENT | COPY NUMBER | RRN OPERONS | RNA, Ribosomal, 16S - genetics | Genome, Bacterial - genetics | RNA, Ribosomal, 23S - genetics | Planctomycetales - genetics | Operon - genetics | rRNA Operon - genetics | Anopheles | RNA | Analysis | Genes | Genomics | Genetic research | Genomes | Phylogeny | Genetic polymorphisms | Gene order | Divergence | Architecture | Nucleotide sequence | Prokaryotes | rRNA | Biological evolution | Operons | Annotations | Plasmids | Species | Assembly
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7. Full Text Distinct bacterial communities across a gradient of vegetation from a preserved Brazilian Cerrado
by de Araujo, Ademir Sergio Ferreira and Bezerra, Walderly Melgaço and dos Santos, Vilma Maria and Rocha, Sandra Mara Barbosa and Carvalho, Nilza da Silva and de Lyra, Maria do Carmo Catanho Pereira and Figueiredo, Marcia do Vale Barreto and de Almeida Lopes, Ângela Celis and Melo, Vania Maria Maciel
Antonie van Leeuwenhoek, ISSN 0003-6072, 4/2017, Volume 110, Issue 4, pp. 457 - 469
The Cerrado biome in the Sete Cidades National Park, an Ecological Reserve in Northeastern Brazil, has conserved its native biodiversity and presents a variety... 
Life Sciences | Brazilian savanna | Soil bacterial diversity | Medical Microbiology | Microbiology | 16S rRNA gene-based metagenomic | Plant Sciences | Soil Science & Conservation | PLANT | SAVANNA | SEQUENCES | MICROBIOME | PATTERNS | MICROBIOLOGY | HOPANOID LIPIDS | FUNGAL | SOIL | SP-NOV | DIVERSITY | Firmicutes - isolation & purification | Soil Microbiology | Verrucomicrobia - classification | Firmicutes - genetics | Plants - microbiology | Proteobacteria - classification | Actinobacteria - classification | Firmicutes - classification | Verrucomicrobia - isolation & purification | Biodiversity | Planctomycetales - classification | Proteobacteria - genetics | Planctomycetales - genetics | Proteobacteria - isolation & purification | Acidobacteria - classification | Ecosystem | Actinobacteria - genetics | Brazil | Planctomycetales - isolation & purification | RNA, Ribosomal, 16S - genetics | Actinobacteria - isolation & purification | Verrucomicrobia - genetics | Acidobacteria - genetics | Acidobacteria - isolation & purification | Ecosystem components | Ribosomal RNA | Biological diversity conservation | Genomics | Soil microbiology | Biological diversity
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8. Full Text Ubiquitous Dissolved Inorganic Carbon Assimilation by Marine Bacteria in the Pacific Northwest Coastal Ocean as Determined by Stable Isotope Probing
by DeLorenzo, Suzanne and Bräuer, Suzanna L and Edgmont, Chelsea A and Herfort, Lydie and Tebo, Bradley M and Zuber, Peter
PLoS ONE, ISSN 1932-6203, 10/2012, Volume 7, Issue 10, p. e46695
In order to identify bacteria that assimilate dissolved inorganic carbon (DIC) in the northeast Pacific Ocean, stable isotope probing (SIP) experiments were... 
THIOBACILLI | PROTEOBACTERIA | METABOLISM | MULTIDISCIPLINARY SCIENCES | SEQUENCE | GROWTH | GENES | DIVERSITY | SP NOV | FIXATION | ECOPHYSIOLOGY | Deltaproteobacteria - metabolism | Gammaproteobacteria - metabolism | Gammaproteobacteria - classification | Planctomycetales - classification | Planctomycetales - metabolism | Bacteria - classification | Gammaproteobacteria - genetics | Carbon - analysis | Verrucomicrobia - genetics | RNA, Ribosomal, 16S | Bacteria - metabolism | Alphaproteobacteria - metabolism | Verrucomicrobia - classification | Deltaproteobacteria - classification | Bacteroidetes - classification | Carbon Isotopes - analysis | Bacteria - genetics | Verrucomicrobia - metabolism | Alphaproteobacteria - classification | Alphaproteobacteria - genetics | Planctomycetales - genetics | Bacteroidetes - metabolism | Deltaproteobacteria - genetics | Pacific Ocean | Bacteroidetes - genetics | Physiological aspects | Bacteria | RNA | Investigations | Assimilation | rRNA 16S | Carbon dioxide | Science | Metabolism | Gene sequencing | Marine environment | Symbionts | Taxa | Marine environments | Coastal waters | Oxidation | Burkholderia | Inorganic carbon | Sulfur | Coastal environments | Dissolved inorganic carbon
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9. Full Text Proteins related to the type i secretion system are associated with secondary SecA-DEAD domain proteins in some species of planctomycetes, verrucomicrobia, proteobacteria, nitrospirae and Chlorobi
by Kamneva, Olga K and Poudel, Saroj and Ward, Naomi L
PLoS ONE, ISSN 1932-6203, 06/2015, Volume 10, Issue 6, p. e0129066
A number of bacteria belonging to the PVC (Planctomycetes-Verrucomicrobia-Chlamydiae) super-phylum contain unusual ribosome-bearing intracellular membranes.... 
CELL-DIVISION | TRANSLOCATION | DNA-SEQUENCES | GRAM-NEGATIVE BACTERIA | CDNA MICROARRAY | MULTIDISCIPLINARY SCIENCES | TRANSCRIPTION | PVC SUPERPHYLUM | NORMALIZATION | MEMBRANE TOPOLOGY | SIGNAL PEPTIDES | Protein Structure, Tertiary | Genome, Bacterial | Proteobacteria - metabolism | Bacterial Proteins - genetics | Endoplasmic Reticulum - metabolism | Ribosomes - metabolism | Phylogeny | Proteobacteria - genetics | Type I Secretion Systems - metabolism | Verrucomicrobia - metabolism | Type I Secretion Systems - genetics | Chlorobi - growth & development | Planctomycetales - genetics | Planctomycetales - metabolism | Planctomycetales - growth & development | Chlorobi - metabolism | Bacterial Proteins - metabolism | Genetic Variation - genetics | Proteobacteria - growth & development | Verrucomicrobia - genetics | Verrucomicrobia - growth & development | Chlorobi - genetics | Intracellular Membranes - metabolism | Evolution, Molecular | Proteins | Analysis | Genomics | Bacteria | Evolution | Adenosine triphosphatase | Translocation | Membranes | Genomic analysis | Peptides | Prokaryotes | Secretion | Change detection | Cell division | Genomes | Translocase | Eukaryotes | Phylogenetics | Polyvinyl chloride | Trends | Gram-negative bacteria | Intracellular | Endoplasmic reticulum | Signal peptides
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10. Full Text The C‐terminal regions of YidC from Rhodopirellula baltica and Oceanicaulis alexandrii bind to ribosomes and partially substitute for SRP receptor function in Escherichia coli
by Seitl, Ines and Wickles, Stephan and Beckmann, Roland and Kuhn, Andreas and Kiefer, Dorothee
Molecular Microbiology, ISSN 0950-382X, 01/2014, Volume 91, Issue 2, pp. 408 - 421
Summary The marine Gram‐negative bacteria Rhodopirellula baltica and Oceanicaulis alexandrii have, in contrast to Escherichia coli, membrane insertases with... 
MUTANTS | COMPLEX | EVOLUTION | INDEPENDENT GENE DUPLICATIONS | PATHWAY | MEMBRANE | BIOCHEMISTRY & MOLECULAR BIOLOGY | SIGNAL RECOGNITION PARTICLE | MICROBIOLOGY | SP-NOV | OXA1 | PROTEIN INSERTION | Bacterial Proteins - chemistry | Ribosomes - metabolism | Recombinant Fusion Proteins - metabolism | Planctomycetales - metabolism | Receptors, Cytoplasmic and Nuclear - chemistry | Escherichia coli - metabolism | Protein Structure, Quaternary | Membrane Proteins - metabolism | Protein Structure, Tertiary | Alphaproteobacteria - metabolism | Bacterial Proteins - genetics | Models, Molecular | Escherichia coli Proteins - metabolism | Receptors, Cytoplasmic and Nuclear - genetics | Recombinant Fusion Proteins - chemistry | Cryoelectron Microscopy | Alphaproteobacteria - genetics | Membrane Proteins - chemistry | Planctomycetales - genetics | Escherichia coli - genetics | Escherichia coli Proteins - genetics | Bacterial Proteins - metabolism | Protein Conformation | Escherichia coli Proteins - chemistry | Receptors, Cytoplasmic and Nuclear - metabolism | Receptors, Peptide - metabolism | Bacteria | Mitochondrial DNA
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11. Full Text Spatially segregated transcription and translation in cells of the endomembrane-containing bacterium Gemmata obscuriglobus
by Ekaterina Y. Gottshall and Corrine Seebart and Jesse C. Gatlin and Naomi L. Ward
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 7/2014, Volume 111, Issue 30, pp. 11067 - 11072
The dogma of coupled transcription and translation in bacteria has been challenged by recent reports of spatial segregation of these processes within the... 
Messenger RNA | Microscopy | DNA | Ribosomes | Antibodies | Nuclear membrane | Bacteria | Cell separation | Animal cells | Cells | ORGANIZATION | LOCALIZATION | ELONGATION-FACTOR TU | RNA | COLOCALIZATION | MULTIDISCIPLINARY SCIENCES | COMPARTMENTALIZATION | PROTEINS | BINDING | RIBOSOMAL-SUBUNIT | Transcription, Genetic - physiology | Planctomycetales - genetics | Planctomycetales - metabolism | Bacterial Proteins - genetics | Protein Biosynthesis - physiology | Bacterial Proteins - biosynthesis | Cell Membrane - genetics | Cell Membrane - metabolism | Planctomycetales - classification | Gene Expression Regulation, Bacterial - physiology | Genetic research | Microbiological research | Genetic aspects | Genetic transcription | Research | Biological Sciences
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