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1. Full Text Hospital Outbreak of Middle East Respiratory Syndrome Coronavirus
by Assiri, Abdullah and McGeer, Allison and Perl, Trish M and Price, Connie S and Al Rabeeah, Abdullah A and Cummings, Derek A.T and Alabdullatif, Zaki N and Assad, Maher and Almulhim, Abdulmohsen and Makhdoom, Hatem and Madani, Hossam and Alhakeem, Rafat and Al-Tawfiq, Jaffar A and Cotten, Matthew and Watson, Simon J and Kellam, Paul and Zumla, Alimuddin I and Memish, Ziad A and KSA MERS-CoV Invest Team and KSA MERS-CoV Investigation Team
The New England Journal of Medicine, ISSN 0028-4793, 08/2013, Volume 369, Issue 5, pp. 407 - 416
A novel coronavirus (MERS-CoV) is causing severe disease in the Middle East. In this report on a hospital outbreak of MERS-CoV infection, 23 confirmed cases... 
MEDICINE, GENERAL & INTERNAL | SARS | INFECTIONS | Humans | Middle Aged | DNA, Viral - analysis | Male | Phylogeny | Coronavirus Infections - transmission | Cross Infection - transmission | Pneumonia, Viral - transmission | Coronavirus Infections - epidemiology | Pneumonia, Viral - epidemiology | Disease Outbreaks | Base Sequence | Aged, 80 and over | Adult | Female | Disease Transmission, Infectious | Cross Infection - virology | Infectious Disease Incubation Period | Saudi Arabia - epidemiology | Coronavirus - isolation & purification | Cross Infection - epidemiology | Intensive Care Units | Infectious Disease Transmission, Patient-to-Professional | Coronavirus Infections - virology | Coronavirus - genetics | Aged | Pneumonia, Viral - virology | Renal Dialysis | Statistics | Coronavirus infections | Distribution | Medical personnel | Pneumonia | Hemodialysis | Mortality | Medical records | Outbreaks | Infections | Ribonucleic acid--RNA | Fever | Morbidity | Cough | Radiography | Intensive care units | Disease transmission | Hospitals | Public health
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2. Full Text Foodborne Transmission of Nipah Virus in Syrian Hamsters
by de Wit, Emmie and Prescott, Joseph and Falzarano, Darryl and Bushmaker, Trenton and Scott, Dana and Feldmann, Heinz and Munster, Vincent J
PLoS Pathogens, ISSN 1553-7366, 2014, Volume 10, Issue 3, p. e1004001
Since 2001, outbreaks of Nipah virus have occurred almost every year in Bangladesh with high case-fatality rates. Epidemiological data suggest that in... 
BATS | ROUTE | VIROLOGY | MALAYSIA | PARAMYXOVIRUS | MICROBIOLOGY | CENTRAL-NERVOUS-SYSTEM | BANGLADESH | INFECTION | FLYING-FOXES | MODEL | PARASITOLOGY | Cricetinae | Animals | Mesocricetus | Drinking | Female | Nipah Virus | Foodborne Diseases - virology | Arecaceae - virology | Henipavirus Infections - transmission | Microbiological research | Henipaviruses | Disease transmission | Zoological research | Host-parasite relationships | Research | Hamsters | Health aspects | Confidence intervals | Encephalitis | Hypotheses | Food contamination & poisoning | Disease | Rodents | Respiratory diseases | Infections | Epidemiology | Zoonoses
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3. Full Text Transmission of equine influenza virus to english foxhounds
by Daly, Janet M and Blunden, Anthony S and MacRae, Shona and Miller, Jodi and Bowman, Samantha J and Kolodziejek, Jolanta and Nowotny, Norbert and Smith, Ken C
Emerging Infectious Diseases, ISSN 1080-6040, 2008, Volume 14, Issue 3, pp. 461 - 464
We retrospectively demonstrated that an outbreak of severe respiratory disease in a pack of English foxhounds in the United Kingdom in September 2002 was... 
H5N1 | INFECTIOUS DISEASES | IMMUNOLOGY | H3N8 | A VIRUSES | DISEASE | Dog Diseases - transmission | Orthomyxoviridae Infections - veterinary | Influenza A Virus, H3N8 Subtype | Male | United Kingdom | Horse Diseases - virology | Pneumonia, Viral - transmission | Horse Diseases - transmission | Animals | Orthomyxoviridae Infections - transmission | Disease Outbreaks | Dogs | Pneumonia, Viral - veterinary | Horses | Female | Retrospective Studies | Orthomyxoviridae Infections - virology | Pneumonia, Viral - virology | Dog Diseases - virology | Influenza viruses | Control | Distribution | Causes of | Respiratory tract diseases | Research | Health aspects | dogs | Dispatch | Interspecies transmission | equine influenza A H3N8 virus | dispatch
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4. Full Text Control of an outbreak of middle east respiratory syndrome in a tertiary hospital in Korea
by Park, Ga Eun and Ko, Jae-Hoon and Peck, Kyong Ran and Lee, Ji Yeon and Lee, Ji Yong and Cho, Sun Young and Ha, Young Eun and Kang, Cheol-In and Kang, Ji-Man and Kim, Yae-Jean and Huh, Hee Jae and Ki, Chang-Seok and Lee, Nam Yong and Lee, Jun Haeng and Jo, Ik Joon and Jeong, Byeong-Ho and Suh, Gee Young and Park, Jinkyeong and Chung, Chi Ryang and Song, Jae-Hoon and Chung, Doo Ryeon
Annals of Internal Medicine, ISSN 0003-4819, 07/2016, Volume 165, Issue 2, pp. 87 - 93
Background: In 2015, a large outbreak of Middle East respiratory syndrome (MERS) occurred in the Republic of Korea. Half of the cases were associated with a... 
MEDICINE, GENERAL & INTERNAL | SYNDROME CORONAVIRUS | SAUDI-ARABIA | Coronavirus Infections - prevention & control | Tertiary Care Centers | Cross Infection - prevention & control | Humans | Quarantine | Lung - diagnostic imaging | Cross Infection - diagnostic imaging | Contact Tracing | Coronavirus Infections - transmission | Cross Infection - transmission | Pneumonia, Viral - transmission | Radiography | Pneumonia, Viral - diagnostic imaging | Coronavirus Infections - epidemiology | Pneumonia, Viral - epidemiology | Pneumonia, Viral - prevention & control | Disease Outbreaks - prevention & control | Protective Clothing | Retrospective Studies | Republic of Korea - epidemiology | Coronavirus Infections - diagnostic imaging | Cross Infection - epidemiology | Management | Methods | Hospitals, University | Infection control
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5. Full Text Clinical review: Primary influenza viral pneumonia
by Rello, Jordi and Pop-Vicas, Aurora
Critical Care, ISSN 1364-8535, 12/2009, Volume 13, Issue 6, pp. 235 - 235
Primary influenza pneumonia has a high mortality rate during pandemics, not only in immunocompromised individuals and patients with underlying comorbid... 
A H1N1 VIRUS | UNITED-STATES | ADULT PATIENTS | COMMUNITY-ACQUIRED PNEUMONIA | HOSPITALIZED-PATIENTS | ADVISORY-COMMITTEE | IMMUNIZATION PRACTICES ACIP | ACUTE LUNG INJURY | FLUID-MANAGEMENT STRATEGIES | RESPIRATORY-DISTRESS-SYNDROME | CRITICAL CARE MEDICINE | Humans | Influenza, Human - epidemiology | Influenza, Human - complications | Influenza, Human - transmission | Disease Progression | Respiratory Distress Syndrome, Adult - etiology | Pneumonia, Viral - physiopathology | Pneumonia, Viral - transmission | Pneumonia, Viral - epidemiology | Disease Outbreaks | Adolescent | Adult | Pneumonia, Viral - mortality | Immunocompromised Host | Seasons | Child | Influenza, Human - physiopathology | Review
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6. Full Text Nursing-home-acquired pneumonia in Germany: an 8-year prospective multicentre study
by Ewig, Santiago and Klapdor, Benjamin and Pletz, Mathias W and Rohde, Gernot and Schütte, Hartwig and Schaberg, Tom and Bauer, Torsten T and Welte, Tobias and CAPNETZ Study Grp and CAPNETZ study group and for the CAPNETZ study group
Thorax, ISSN 0040-6376, 02/2012, Volume 67, Issue 2, pp. 132 - 138
ObjectiveTo determine differences in aetiologies, initial antimicrobial treatment choices and outcomes in patients with nursing-home-acquired pneumonia (NHAP)... 
BACTERIA | COMMUNITY | RESPIRATORY SYSTEM | CARE-ASSOCIATED PNEUMONIA | RISK | PATTERNS | COMPETENCE NETWORK | EPIDEMIOLOGY | ANTIBIOTIC-THERAPY | CLINICAL-OUTCOMES | AGE | Humans | Pneumonia, Viral - drug therapy | Cross Infection - mortality | Male | Cross Infection - transmission | Pneumonia, Viral - transmission | Community-Acquired Infections - drug therapy | Pneumonia, Bacterial - mortality | Aged, 80 and over | Influenza, Human - mortality | Female | Influenza, Human - drug therapy | Nursing Homes - statistics & numerical data | Community-Acquired Infections - mortality | Pneumonia, Bacterial - microbiology | Comorbidity | Anti-Infective Agents - therapeutic use | Pneumonia, Bacterial - transmission | Treatment Outcome | Influenza, Human - transmission | Germany - epidemiology | Homes for the Aged - statistics & numerical data | Epidemiologic Methods | Cross Infection - microbiology | Cross Infection - diagnosis | Pneumonia, Bacterial - drug therapy | Aged | Pneumonia, Viral - mortality | Clinical trials | Research | Causes and theories of causation | Risk factors | Streptococcus pneumoniae | Diseases
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7. Full Text Non-avian animal reservoirs present a source of influenza A PB1-F2 proteins with novel virulence-enhancing markers
by Alymova, Irina V and Alymova, Irina V and York, Ian A and York, Ian A and McCullers, Jonathan A and McCullers, Jonathan A
PloS one, ISSN 1932-6203, 2014, Volume 9, Issue 11, p. e111603
PB1-F2 protein, expressed from an alternative reading frame of most influenza A virus (IAV) PB1 segments, may possess specific residues associated with... 
SECONDARY BACTERIAL-INFECTIONS | EQUINE INFLUENZA | TRANSMISSION | ORIGIN | VIRUS | GENE | SWINE | MULTIDISCIPLINARY SCIENCES | DOGS | EXPRESSION | H3N2 | Orthomyxoviridae Infections - blood | Viral Proteins - chemistry | Humans | Influenza A virus - genetics | Viral Proteins - immunology | Viral Proteins - genetics | Dogs - blood | Influenza A virus - isolation & purification | Influenza, Human - transmission | Phylogeny | Horses - blood | Animals | Dogs - virology | Influenza A virus - pathogenicity | Swine - blood | Influenza A virus - immunology | Influenza, Human - virology | Horses - virology | Orthomyxoviridae Infections - virology | Swine - virology | Orthomyxoviridae Infections - immunology | Residues | Pneumonia | Pandemics | Toxicity | Pathogenesis | Virulence | Genes | Cytotoxicity | Viruses | Infections | Avian flu | Proteins | Historical account | Swine | Phylogenetics | Bacteria | Strains (organisms) | Pathogens | Immunization | Bacterial infections | Markers | Birds | Inflammation | Disease control | Zoonoses | Pathogenicity | Hogs | Genetic markers | Infectious diseases | Surveillance | Swine flu | Respiratory diseases | Influenza | Dogs | Horses | Livestock
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8. Full Text An Anti-Human ICAM-1 Antibody Inhibits Rhinovirus-Induced Exacerbations of Lung Inflammation
by Traub, Stephanie and Nikonova, Alexandra and Carruthers, Alan and Dunmore, Rebecca and Vousden, Katherine A and Gogsadze, Leila and Hao, Weidong and Zhu, Qing and Bernard, Katie and Zhu, Jie and Dymond, Michael and McLean, Gary R and Walton, Ross P and Glanville, Nicholas and Humbles, Alison and Khaitov, Musa and Wells, Ted and Kolbeck, Roland and Leishman, Andrew J and Sleeman, Matthew A and Bartlett, Nathan W and Johnston, Sebastian L
PLoS Pathogens, ISSN 1553-7366, 08/2013, Volume 9, Issue 8, p. e1003520
Human rhinoviruses (HRV) cause the majority of common colds and acute exacerbations of asthma and chronic obstructive pulmonary disease (COPD). Effective... 
RESPIRATORY VIRUSES | INFECTIONS | PLECONARIL | PREVENTION | MICROBIOLOGY | ILLNESSES | VIROLOGY | DISEASE | ASTHMA | COMPLICATIONS | BINDING | ASSOCIATION | PARASITOLOGY | Pneumonia, Viral - diet therapy | Picornaviridae Infections - drug therapy | Humans | Th2 Cells - immunology | Virus Internalization - drug effects | Lymphocyte Function-Associated Antigen-1 - immunology | Pneumonia, Viral - genetics | Immunoglobulin G - immunology | Immunoglobulin G - pharmacology | Picornaviridae Infections - genetics | Rhinovirus - immunology | Chemokines - immunology | Picornaviridae Infections - pathology | Picornaviridae Infections - immunology | Antibodies, Monoclonal, Murine-Derived - immunology | Intercellular Adhesion Molecule-1 - immunology | Jurkat Cells | Pneumonia, Viral - pathology | Mice, Transgenic | Chemokines - genetics | Pneumonia, Viral - immunology | Animals | Lymphocyte Function-Associated Antigen-1 - genetics | Intercellular Adhesion Molecule-1 - genetics | Mice | HeLa Cells | Antibodies, Monoclonal, Murine-Derived - pharmacology | Viral antibodies | Rhinoviruses | Lung diseases | Host-parasite relationships | Antibodies | Physiological aspects | Dosage and administration | Inflammation | Research | Health aspects | Scholarships & fellowships | Lungs | Cytokines | Disease | Rodents | Viruses | Chronic obstructive pulmonary disease | Experiments | Viral infections | Chemokines | Asthma
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9. Full Text Viral infection is not uncommon in adult patients with severe hospital-acquired pneumonia
by Hong, Hyo-Lim and Hong, Sang-Bum and Ko, Gwang-Beom and Huh, Jin Won and Sung, Heungsup and Do, Kyung-Hyun and Kim, Sung-Han and Lee, Sang-Oh and Kim, Mi-Na and Jeong, Jin-Yong and Lim, Chae-Man and Kim, Yang Soo and Woo, Jun Hee and Koh, Younsuck and Choi, Sang-Ho
PLoS ONE, ISSN 1932-6203, 04/2014, Volume 9, Issue 4, p. e95865
Background: Viral pathogens have not generally been regarded as important causes of severe hospital-acquired pneumonia (HAP), except in patients with... 
IMMUNOCOMPROMISED PATIENTS | BONE-MARROW-TRANSPLANTATION | MULTIDISCIPLINARY SCIENCES | SINGLE-CENTER | STEM-CELL TRANSPLANTATION | SYNCYTIAL VIRUS | RECIPIENTS | SOLID-ORGAN TRANSPLANT | EPIDEMIOLOGY | RESPIRATORY VIRUS-INFECTIONS | NOSOCOMIAL PNEUMONIA | Virus Diseases - epidemiology | Pneumonia - epidemiology | Humans | Middle Aged | Logistic Models | Male | Hospitalization | Pneumonia - virology | Staphylococcus aureus - pathogenicity | Hospitals - statistics & numerical data | Female | Aged | Cross Infection - epidemiology | Hospital patients | Pneumonia | Health aspects | Bacterial pneumonia | Risk factors | Distribution | Multiplexing | Intensive care | Transplants & implants | Laboratories | Physicians | Critical care | Viruses | Infections | Malignancy | Etiology | Bone marrow | Bacteria | Chronic obstructive pulmonary disease | Nosocomial infections | Parainfluenza | Pathogens | Bacterial infections | Mortality | Lung diseases | Patients | Polymerase chain reaction | Medicine | Infectious diseases | Hospitals | Tuberculosis | Influenza | Obstructive lung disease | Stem cells | Adults | Immunocompromised hosts | Viral infections | Kidney transplantation
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10. Full Text Comparison of viral infection in healthcare-associated pneumonia (HCAP) and community-acquired pneumonia (CAP)
by Kim, Eun Sun and Park, Kyoung Un and Lee, Sang Hoon and Lee, Yeon Joo and Park, Jong Sun and Cho, Young-Jae and Yoon, Ho Il and Lee, Choon-Taek and Lee, Jae Ho
PLoS ONE, ISSN 1932-6203, 02/2018, Volume 13, Issue 2, p. e0192893
Although viruses are known to be the second most common etiological factor in community-acquired pneumonia (CAP), the respiratory viral profile of the patients... 
Virus diseases | Pneumonia | Diagnosis | Comparative analysis | Bacterial pneumonia | Risk factors | Health care | Laboratories | Communities | Critical care | Viruses | Systematic review | Infections | Airway management | Etiology | Bacteria | Influenza A | Pathogens | Immunization | Internal medicine | Mortality | Health care policy | Staphylococcus infections | Patients | Polymerase chain reaction | Medicine | Studies | Multidrug resistant organisms | Infectious diseases | Hospitals | Antibiotics | Influenza | Sputum | Viral infections
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11. Full Text Illumination of parainfluenza virus infection and transmission in living animals reveals a tissue-specific dichotomy
by Burke, Crystal W and Mason, John N and Surman, Sherri L and Jones, Bart G and Dalloneau, Emilie and Hurwitz, Julia L and Russell, Charles J
PLoS Pathogens, ISSN 1553-7366, 07/2011, Volume 7, Issue 7, p. e1002134
The parainfluenza viruses (PIVs) are highly contagious respiratory paramyxoviruses and a leading cause of lower respiratory tract (LRT) disease. Since no... 
FIELD ISOLATE | AFRICAN-GREEN MONKEYS | COTTON RATS | MICROBIOLOGY | RECOMBINANT SENDAI-VIRUS | MOUSE STRAINS | VIROLOGY | FUSION PROTEIN | MICE | REVERSE GENETICS | HUMAN VOLUNTEERS | RESPIRATORY SYNCYTIAL VIRUS | PARASITOLOGY | Sendai virus - physiology | Cell Line | Lung - pathology | Luciferases - metabolism | Rodent Diseases - transmission | Bronchoalveolar Lavage Fluid - virology | Respirovirus Infections - transmission | Respiratory System | Rodent Diseases - immunology | Luminescent Measurements | Administration, Intranasal | Disease Progression | Trachea - virology | Trachea - pathology | Lung - virology | Animals | Respirovirus Infections - pathology | Rodent Diseases - pathology | Bronchoalveolar Lavage Fluid - cytology | Mice | Mice, Inbred BALB C | Respirovirus Infections - immunology | Care and treatment | Parainfluenza viruses | Viral vaccines | Influenza | Development and progression | Diagnosis | Research | Studies | Pediatrics | Pathology | Bioluminescence | Pathogenesis | Viruses | Infections | Vaccines | Experiments | Children & youth
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12. Full Text Long-term shedding of influenza virus, parainfluenza virus, respiratory syncytial virus and nosocomial epidemiology in patients with hematological disorders
by Lehners, Nicola and Tabatabai, Julia and Prifert, Christiane and Wedde, Marianne and Puthenparambil, Joe and Weissbrich, Benedikt and Biere, Barbara and Schweiger, Brunhilde and Egerer, Gerlinde and Schnitzler, Paul
PLoS ONE, ISSN 1932-6203, 02/2016, Volume 11, Issue 2, p. e0148258
Respiratory viruses are a cause of upper respiratory tract infections (URTI), but can be associated with severe lower respiratory tract infections (LRTI) in... 
MOLECULAR CHARACTERIZATION | VIRAL-INFECTIONS | RISK-FACTORS | ANTIVIRAL THERAPY | MULTIDISCIPLINARY SCIENCES | GROUP-A | STEM-CELL TRANSPLANTATION | OUTBREAK | RECIPIENTS | G-PROTEIN | TRACT INFECTIONS | Medical research | Care and treatment | Transplantation | Phylogeny | Epidemiology | Diseases | Influenza viruses | Cladistic analysis | Analysis | Influenza | Stem cells | Medicine, Experimental | Cross infection | Nosocomial infections | Nosocomial infection | Shedding | Pneumonia | Transplants & implants | Laboratories | Stem cell transplantation | Viruses | Infections | Gene sequencing | Proteins | Respiratory tract | Genotype & phenotype | Winter | Bone marrow | Respiratory tract diseases | Influenza A | Parainfluenza | Influenza B | Autografts | Hematology | Internal medicine | Patients | Disease control | Virology | Studies | Chemotherapy | Infectious diseases | Hospitals | Respiratory syncytial virus | Immunocompromised hosts | Viral infections
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