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1. Full Text Emergence of a competence-reducing filamentous phage from the genome of acinetobacter baylyi ADP1
by Renda, Brian A and Chan, Cindy and Parent, Kristin N and Barrick, Jeffrey E
Journal of Bacteriology, ISSN 0021-9193, 2016, Volume 198, Issue 23, pp. 3209 - 3219
Bacterial genomes commonly contain prophage sequences as a result of past infections with lysogenic phages. Many of these integrated viral sequences are... 
SP. STRAIN BD413 | PROPHAGES | NATURAL TRANSFORMATION | BACTERIOPHAGE | EVOLUTION | TOXIN | MICROBIOLOGY | GENE-TRANSFER | CTX-PHI | VIBRIO-CHOLERAE | NUCLEOTIDE-SEQUENCE | Acinetobacter baumannii - virology | Genome, Viral | Genome, Bacterial | Inovirus - classification | Bacterial Proteins - genetics | Inovirus - genetics | Inovirus - physiology | Prophages - classification | Prophages - genetics | Prophages - isolation & purification | Inovirus - isolation & purification | Bacterial Proteins - metabolism | Acinetobacter baumannii - genetics | Prophages - physiology | Acinetobacter | Genetic aspects | Genomes | Research | Bacteria | Toxins | Cells | Environmental conditions | Index Medicus
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2. Full Text Gammasphaerolipovirus, a newly proposed bacteriophage genus, unifies viruses of halophilic archaea and thermophilic bacteria within the novel family Sphaerolipoviridae
by Pawlowski, Alice and Rissanen, Ilona and Bamford, Jaana K. H and Krupovic, Mart and Jalasvuori, Matti
Archives of Virology, ISSN 0304-8608, 6/2014, Volume 159, Issue 6, pp. 1541 - 1554
A new family of viruses named Sphaerolipoviridae has been proposed recently. It comprises icosahedral, tailless haloarchaeal viruses with an internal lipid... 
Medical Microbiology | Infectious Diseases | Biomedicine | Virology | ICOSAHEDRAL VIRUSES | TAILED VIRUSES | EVOLUTION | VIROLOGY | GENETIC ELEMENTS | PROTEOMIC CHARACTERIZATION | MEMBRANE | HOST | HYPERSALINE ENVIRONMENTS | THERMUS-THERMOPHILUS | HALOARCULA-HISPANICA | DNA Viruses - ultrastructure | Molecular Sequence Data | Prophages - classification | Prophages - ultrastructure | Sequence Analysis, DNA | DNA Viruses - genetics | Prophages - genetics | Bacteriophages - isolation & purification | DNA Viruses - isolation & purification | Sequence Homology | Archaea - virology | Bacteriophages - classification | Bacteriophages - ultrastructure | Prophages - isolation & purification | Genes, Viral | Thermus thermophilus - virology | Bacteriophages - genetics | DNA Viruses - classification | Virion - ultrastructure | DNA, Viral - genetics | Cluster Analysis | Virus diseases | Proteins | Bacteria | Genomics | Adenosine triphosphatase | Index Medicus | Bacteriophages | DNA Viruses | Archaea | Thermus thermophilus | Life Sciences | Microbiology and Parasitology | Virion | Prophages | DNA, Viral
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3. Full Text Two novel temperate bacteriophages co-existing in Aeromonas sp. ARM81 – Characterization of their genomes, proteomes and DNA methyltransferases
by Dziewit, Lukasz and Radlinska, Monika
Journal of General Virology, ISSN 0022-1317, 08/2016, Volume 97, Issue 8, pp. 2008 - 2022
Aeromonas species are causative agents of a wide spectrum of diseases in animals and humans. Although these bacteria are commonly found in various... 
DNA methyltransferase | Bacteriophage | Dam-like enzyme | Plasmid-like prophage | Aeromonas | TRANSLATIONAL ACTIVATOR | ADENINE METHYLATION | PROTEIN | VIROLOGY | SALMONICIDA SUBSP SALMONICIDA | SINGLE-MOLECULE | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | LINEAR PLASMID PROPHAGE | VIBRIO-PARAHAEMOLYTICUS | BACTERIAL | TELOMERE PHAGES | LAMBDA | Genome, Viral | Microscopy, Electron, Transmission | Bacteriophages - chemistry | Lysogeny | Synteny | Phylogeny | Proteome - analysis | Sequence Analysis, DNA | Methyltransferases - analysis | Prophages - genetics | Bacteriophages - isolation & purification | DNA, Viral - chemistry | Aeromonas - virology | Prophages - isolation & purification | Bacteriophages - genetics | Virion - ultrastructure | Bacteriophages - enzymology | DNA, Viral - genetics | Prophages - enzymology | Gene Order | Prophages - chemistry | Virus Activation | Viral Proteins - analysis | Index Medicus
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4. Full Text Characterization of temperate phages infecting Clostridium difficile isolates of human and animal origins
by Sekulovic, Ognjen and Garneau, Julian R and Néron, Audrey and Fortier, Louis-Charles
Applied and Environmental Microbiology, ISSN 0099-2240, 2014, Volume 80, Issue 8, pp. 2555 - 2563
Clostridium difficile is a Gram-positive pathogen infecting humans and animals. Recent studies suggest that animals could represent potential reservoirs of C.... 
PCR RIBOTYPES | MOLECULAR CHARACTERIZATION | STRAINS | PROPHAGES | BACTERIOPHAGE | EVOLUTION | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | RESISTANCE | MICROBIOLOGY | PREVALENCE | TOXIN PRODUCTION | EPIDEMIOLOGY | Myoviridae - physiology | Molecular Weight | Prophages - growth & development | DNA Fingerprinting | Humans | Siphoviridae - growth & development | Myoviridae - isolation & purification | Clostridium difficile - isolation & purification | Myoviridae - ultrastructure | Restriction Mapping | Bacteriophages - isolation & purification | Clostridium Infections - microbiology | Clostridium difficile - virology | Siphoviridae - physiology | Siphoviridae - ultrastructure | Clostridium Infections - veterinary | Siphoviridae - isolation & purification | Bacteriophages - growth & development | Host Specificity | Prophages - ultrastructure | Electrophoresis, Gel, Pulsed-Field | DNA, Viral - chemistry | Animals | Bacteriophages - ultrastructure | Prophages - isolation & purification | Dogs | Horses | Bacteriophages - physiology | DNA, Viral - genetics | Myoviridae - growth & development | Prophages - physiology | Bacteriophages | Clostridium difficile | Physiological aspects | Influence | Genetic aspects | Research | Identification and classification | Gram-positive bacteria | Ultraviolet radiation | Genomes | Antibiotics | Drug resistance | Deoxyribonucleic acid--DNA | Index Medicus | Microbial Ecology
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5. Full Text The genome sequence of Escherichia coli tailed phage D6 and the diversity of Enterobacteriales circular plasmid prophages
by Gilcrease, Eddie B and Casjens, Sherwood R
Virology, ISSN 0042-6822, 02/2018, Volume 515, pp. 203 - 214
The temperate bacteriophage D6 can exist as a circular plasmid prophage, and we report here its 91,159 bp complete genome sequence. It is a distant relative of... 
Plasmid prophage | Bacteriophage | Genome sequence | SSU5 | Myoviridae | P1 | D6 | Bacteriophages - isolation & purification | Genome, Viral | Escherichia coli - virology | Bacteriophages - classification | Prophages - isolation & purification | Plasmids - genetics | Bacteriophages - genetics | Prophages - classification | Plasmids - metabolism | Sequence Analysis, DNA | Prophages - genetics | Index Medicus | genome sequence | plasmid prophage | bacteriophage
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6. Full Text Viruses in the faecal microbiota of monozygotic twins and their mothers
by Rohwer, Forest and Reyes, Alejandro and Haynes, Matthew and Hanson, Nicole and Heath, Andrew C and Angly, Florent E and Gordon, Jeffrey I
Nature, ISSN 0028-0836, 07/2010, Volume 466, Issue 7304, pp. 334 - 338
Viral diversity and life cycles are poorly understood in the human gut and other body habitats. Phages and their encoded functions may provide informative... 
PROTEIN | SEQUENCES | HIGH-THROUGHPUT | VIRAL COMMUNITIES | MULTIDISCIPLINARY SCIENCES | ESCHERICHIA-COLI | GUT | GENOMIC ANALYSIS | PHAGE PREDATION | DIVERSITY | HUMAN FECES | Anaerobiosis | Viruses - genetics | Genes, Bacterial - genetics | Twins, Monozygotic - genetics | Genome, Viral - genetics | Humans | RNA, Ribosomal, 16S - analysis | DNA, Viral - analysis | Mothers | Viral Proteins - metabolism | Bacteriophages - isolation & purification | Feces - microbiology | Feces - virology | Metagenome - genetics | Time Factors | Intestines - virology | Bacteria - classification | Bacteriophages - genetics | Bacteriophages - enzymology | Female | Viral Proteins - analysis | Viruses - isolation & purification | Bacteria - metabolism | Viral Proteins - genetics | Prophages - classification | Bacteria - genetics | Sequence Analysis, DNA | Prophages - genetics | Viruses - classification | Genome, Bacterial - genetics | Bacteria - isolation & purification | Intestines - microbiology | Bacteriophages - classification | Prophages - isolation & purification | Heredity - genetics | RNA, Ribosomal, 16S - genetics | DNA, Viral - genetics | Viruses | Bacteria | Microbiology | Methods | Human | Microorganisms | Communities | Data sets | Genetics | Signatures | Phage | Index Medicus
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7. Full Text Genetic and life-history traits associated with the distribution of prophages in bacteria
by Touchon, Marie and Bernheim, Aude and Rocha, Eduardo P.C
ISME Journal, ISSN 1751-7362, 11/2016, Volume 10, Issue 11, pp. 2744 - 2754
Nearly half of the sequenced bacteria are lysogens and many of their prophages encode adaptive traits. Yet, the variables driving prophage distribution remain... 
EVOLUTION | PHAGE-LAMBDA | GENOMES | ESCHERICHIA-COLI | CRISPR-CAS | RESISTANCE | SEASONAL-VARIATION | ECOLOGY | MICROBIOLOGY | TEMPERATE | TRADE-OFFS | VIRUSES | Bacteria - isolation & purification | Genome, Bacterial | Base Sequence | Prophages - isolation & purification | CRISPR-Cas Systems | Life History Traits | Lysogeny | Bacteria - classification | Bacteria - genetics | Bacteria - virology | Prophages - genetics | Prophages - physiology | Index Medicus | Original
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8. Full Text Prophages of the genus Bifidobacterium as modulating agents of the infant gut microbiota
by Lugli, Gabriele Andrea and Milani, Christian and Turroni, Francesca and Tremblay, Denise and Ferrario, Chiara and Mancabelli, Leonardo and Duranti, Sabrina and Ward, Doyle V and Ossiprandi, Maria Cristina and Moineau, Sylvain and Sinderen, Douwe and Ventura, Marco
Environmental Microbiology, ISSN 1462-2912, 07/2016, Volume 18, Issue 7, pp. 2196 - 2213
Phage predation is one of the key forces that shape genetic diversity in bacterial genomes. Phages are also believed to act as modulators of the microbiota... 
POPULATION | BACTERIOPHAGES | EVOLUTION | GENETIC ELEMENTS | INTEGRATION | COMPARATIVE GENOMICS | PROTEIN FAMILIES | METAGENOMES | MICROBIOLOGY | SEARCH TOOL | PHAGE | Bifidobacterium - classification | Bifidobacterium - genetics | Humans | Gastrointestinal Microbiome | Gastrointestinal Tract - microbiology | Infant | Male | Prophages - classification | Phylogeny | Bifidobacterium - isolation & purification | Prophages - genetics | Biological Evolution | Genetic Variation | Bifidobacterium - virology | Prophages - isolation & purification | Female | Prophages - physiology | Biological products | Microbiota (Symbiotic organisms) | Analysis | Genomics | Biological diversity | Genomes | Genetic diversity | Index Medicus
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9. Full Text Antibiotics in feed induce prophages in swine fecal microbiomes
by Allen, Heather K and Looft, Torey and Bayles, Darrell O and Humphrey, Samuel and Levine, Uri Y and Alt, David and Stanton, Thaddeus B
mBio, ISSN 2150-7511, 11/2011, Volume 2, Issue 6
Antibiotics are a cost-effective tool for improving feed efficiency and preventing disease in agricultural animals, but the full scope of their collateral... 
BETA-LACTAM | PIG DIETS | VIRULENCE FACTORS | GROWTH | MICROBIOLOGY | GENE-TRANSFER | RIBOSOMAL-RNA | SOS RESPONSE | ANTIMICROBIAL RESISTANCE | GASTROINTESTINAL MICROBIOTA | VIRUSES | Prophages - growth & development | Biota | Bacteria - drug effects | Prophages - drug effects | Carbadox - pharmacology | DNA, Bacterial - chemistry | DNA, Ribosomal - chemistry | Swine | Bacteria - classification | Bacteria - virology | DNA, Ribosomal - genetics | Gastrointestinal Tract - virology | Gastrointestinal Tract - microbiology | Prophages - classification | Penicillin G - pharmacology | Bacteria - genetics | Sequence Analysis, DNA | Sulfamethazine - pharmacology | Prophages - genetics | Chlortetracycline - pharmacology | Animals | DNA, Bacterial - genetics | RNA, Ribosomal, 16S - genetics | Anti-Bacterial Agents - pharmacology | Metagenome | Drug Combinations | Animal Feed | Index Medicus
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10. Full Text Bacteriophages of the urinary microbiome
by Miller-Ensminger, Taylor and Garretto, Andrea and Brenner, Jonathon and Thomas-White, Krystal and Zambom, Adriano and Wolfe, Alan J and Putonti, Catherine
Journal of Bacteriology, ISSN 0021-9193, 04/2018, Volume 200, Issue 7, p. e00738-17
Bacterial viruses (bacteriophages) play a significant role in microbial community dynamics. Within the human gastrointestinal tract, for instance, associations... 
Bacteriophages | Virus | Bacteria | Prophage | Urinary tract | Microbiome | bacteria | bacteriophages | HOST-RANGE | urinary tract | RAPID ANNOTATION | LYSOGENIC VIRAL-INFECTION | MICROBIOLOGY | HEALTHY | INDUCTION | microbiome | virus | PROPHAGES | WOMEN | prophage | PHAGES | INCONTINENCE | DISEASE | Humans | Computational Biology | Coliphages - genetics | Phylogeny | Urinary Tract - virology | Bacteria - genetics | Sequence Analysis, DNA | Prophages - genetics | Bacteriophages - isolation & purification | Pregnancy | Genome, Bacterial - genetics | Urinary Bladder - virology | Microbiota | Urinary Bladder, Overactive - virology | Prophages - isolation & purification | Bacteriophages - genetics | Coliphages - isolation & purification | Female | High-Throughput Nucleotide Sequencing | Urinary Bladder - microbiology | Urinary Tract - microbiology | Repositories | Digestive system | Communities | Escherichia coli | Phages | Microbiomes | Bladder | Viruses | Homology | Genomes | Gastrointestinal tract | Bacteriology | Biological diversity | Gene sequencing | Surveys | Species diversity | Eukaryotes | Microorganisms | Bacterial infections | Microbiology | Genomics | Index Medicus
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11. Full Text Genome hypermobility by lateral transduction
by Chen, John and Quiles-Puchalt, Nuria and Chiang, Yin Ning and Bacigalupe, Rodrigo and Fillol-Salom, Alfred and Chee, Melissa Su Juan and Fitzgerald, J. Ross and Penadés, José R
Science, ISSN 0036-8075, 10/2018, Volume 362, Issue 6411, pp. 207 - 212
Genetic transduction is a major evolutionary force that underlies bacterial adaptation. Here we report that the temperate bacteriophages of Staphylococcus... 
BACTERIOPHAGE-P22 | CHROMOSOME | DNA | MULTIDISCIPLINARY SCIENCES | SALMONELLA-TYPHIMURIUM | GIANT PROTEIN EBH | HOST | STAPHYLOCOCCUS-AUREUS | EXCISION | PHAGE | PROPHAGE | Staphylococcus aureus - genetics | Genome, Bacterial | Lysogeny - genetics | Virus Activation - physiology | Chromosomes, Bacterial - genetics | Transduction, Genetic | Lysogeny - physiology | Virus Activation - genetics | Prophages - genetics | Staphylococcus Phages - genetics | DNA Packaging | Virus Replication | Staphylococcus Phages - physiology | Staphylococcus aureus - virology | Chromosomes, Bacterial - virology | Prophages - physiology | Bacteriophages | Genetic research | Genetic aspects | Transduction | Research | Staphylococcus aureus | Genomics | Genomes | Pathogens | Gene transfer | Genes | Phages | Biological evolution | Viruses | DNA biosynthesis | Pathogenicity | Amplification | Antibiotics | Pathogenicity islands | Antibiotic resistance | Packaging | Replication | Bacteria | Prophages | Chromosomes | Automotive components | Deoxyribonucleic acid--DNA | Life cycles | Index Medicus
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