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Journal of Molecular Biology, ISSN 0022-2836, 04/2019, Volume 431, Issue 8, pp. 1540 - 1564
Protein folding/unfolding is a complicated process that defies high-resolution characterization by experimental methods. As an alternative, atomistic molecular... 
protein folding | biovisualization | protein unfolding | molecular dynamics | DENATURED STATE | ENGRAILED HOMEODOMAIN | STRUCTURAL BASIS | SEQUENCE IDENTITY | PATHWAY | UBIQUITIN | BIOCHEMISTRY & MOLECULAR BIOLOGY | NANOSECONDS | MUTATIONS | MOLECULAR-DYNAMICS SIMULATIONS | NUCLEIC-ACIDS | Proteins | Protein folding | Analysis | Denaturation | Crystals | Molecular dynamics | Structure
Journal Article
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 3/2016, Volume 113, Issue 12, pp. 3159 - 3163
Journal Article
Current Opinion in Structural Biology, ISSN 0959-440X, 2004, Volume 14, Issue 3, pp. 374 - 379
Single-molecule studies of RNA folding and unfolding are providing impressive details of the intermediates that occur and their rates of interconversion. The... 
FRET | Fluorescence resonance energy transfer | Fluorescence correlation spectroscopy | FCS | RIBOZYME | HELICASES | FORCE | SINGLE-MOLECULE | BIOCHEMISTRY & MOLECULAR BIOLOGY | EQUALITY | PROTEINS | CELL BIOLOGY | Thermodynamics | Base Sequence | Molecular Sequence Data | Kinetics | Nucleic Acid Conformation | RNA - chemistry | RNA - metabolism
Journal Article
Biopolymers, ISSN 0006-3525, 11/2013, Volume 99, Issue 11, pp. 860 - 869
Journal Article
Journal Article
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 03/2016, Volume 113, Issue 12, p. 3159
  We use ...H NMR to probe the energy landscape in the protein folding and unfolding process. Using the scheme ... reversible unfolded (intermediate) ...... 
Proteins | Water | Temperature | Nuclear magnetic resonance--NMR | Energy | Peptides | Hydrogen
Journal Article
Journal of the American Chemical Society, ISSN 0002-7863, 03/2015, Volume 137, Issue 10, pp. 3540 - 3546
Journal Article
Physica A: Statistical Mechanics and its Applications, ISSN 0378-4371, 09/2018, Volume 506, pp. 987 - 992
Thermal response of the inner (iCorA) and outer (oCorA) segments of a transmembrane protein CorA is investigated by a large-scale coarse-grained Monte Carlo... 
Transmembrane protein CorA | Protein folding | Monte Carlo simulation | Coarse-grained model | Thermal response | SYSTEM | MECHANISM | PHYSICS, MULTIDISCIPLINARY | CRYSTAL-STRUCTURE | MAGNESIUM TRANSPORT | DYNAMICS | MG2 | SELECTIVITY | Proteins | Monte Carlo method | Models | Analysis
Journal Article
Journal of Chemical Theory and Computation, ISSN 1549-9618, 08/2016, Volume 12, Issue 8, pp. 3473 - 3481
Because standard molecular dynamics (MD) simulations are unable to access time scales of interest in complex biomolecular systems, it is common to "stitch... 
WEIGHTED ENSEMBLE | RATE CONSTANTS | TRAJECTORIES | PHYSICS, ATOMIC, MOLECULAR & CHEMICAL | CHEMISTRY, PHYSICAL | EXCHANGE MOLECULAR-DYNAMICS | 1ST-PASSAGE TIME | SIMULATIONS | Index Medicus | Proteins | Molecular dynamics | Mathematical models | Markov models | Trajectories | Dynamical systems | Tuning | Folding
Journal Article