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Nature Methods, ISSN 1548-7091, 03/2015, Volume 12, Issue 4, pp. 357 - 360
HISAT (hierarchical indexing for spliced alignment of transcripts) is a highly efficient system for aligning reads from RNA sequencing experiments. HISAT uses... 
TRANSCRIPTOMES | TOPHAT | ALIGNMENT | GENE | ANNOTATION | BIOCHEMICAL RESEARCH METHODS | RNA-SEQ EXPERIMENTS | READS | Sequence Alignment - methods | Sequence Analysis, DNA - instrumentation | Limit of Detection | Pseudogenes - genetics | Sequence Analysis, RNA | Humans | RNA sequencing | Genetic research | Research | Genomics | Innovations | Ribonucleic acid--RNA | Genomes | Index Medicus
Journal Article
Nature, ISSN 0028-0836, 2013, Volume 496, Issue 7446, pp. 498 - 503
Journal Article
by Kim, Min-Sik and Pinto, Sneha M and Getnet, Derese and Nirujogi, Raja Sekhar and Manda, Srikanth S and Chaerkady, Raghothama and Madugundu, Anil K and Kelkar, Dhanashree S and Isserlin, Ruth and Jain, Shobhit and Thomas, Joji K and Muthusamy, Babylakshmi and Leal-Rojas, Pamela and Kumar, Praveen and Sahasrabuddhe, Nandini A and Balakrishnan, Lavanya and Advani, Jayshree and George, Bijesh and Renuse, Santosh and Selvan, Lakshmi Dhevi N and Patil, Arun H and Nanjappa, Vishalakshi and Radhakrishnan, Aneesha and Prasad, Samarjeet and Subbannayya, Tejaswini and Raju, Rajesh and Kumar, Manish and Sreenivasamurthy, Sreelakshmi K and Marimuthu, Arivusudar and Sathe, Gajanan J and Chavan, Sandip and Datta, Keshava K and Subbannayya, Yashwanth and Sahu, Apeksha and Yelamanchi, Soujanya D and Jayaram, Savita and Rajagopalan, Pavithra and Sharma, Jyoti and Murthy, Krishna R and Syed, Nazia and Goel, Renu and Khan, Aafaque A and Ahmad, Sartaj and Dey, Gourav and Mudgal, Keshav and Chatterjee, Aditi and Huang, Tai-Chung and Zhong, Jun and Wu, Xinyan and Shaw, Patrick G and Freed, Donald and Zahari, Muhammad S and Mukherjee, Kanchan K and Shankar, Subramanian and Mahadevan, Anita and Lam, Henry and Mitchell, Christopher J and Shankar, Susarla Krishna and Satishchandra, Parthasarathy and Schroeder, John T and Sirdeshmukh, Ravi and Maitra, Anirban and Leach, Steven D and Drake, Charles G and Halushka, Marc K and Prasad, T. S. Keshava and Hruban, Ralph H and Kerr, Candace L and Bader, Gary D and Iacobuzio-Donahue, Christine A and Gowda, Harsha and Pandey, Akhilesh
Nature, ISSN 0028-0836, 2014, Volume 509, Issue 7502, pp. 575 - 581
Journal Article
Journal Article
Nature, ISSN 0028-0836, 2004, Volume 432, Issue 7018, pp. 695 - 716
We present here a draft genome sequence of the red jungle fowl, Gallus gallus. Because the chicken is a modern descendant of the dinosaurs and the first... 
MOUSE GENOME | NON-LTR RETROTRANSPOSONS | ALCOHOL-DEHYDROGENASE | PHYLOGENETIC ANALYSIS | MULTIDISCIPLINARY SCIENCES | BROWN-NORWAY RAT | RECENT SEGMENTAL DUPLICATIONS | MAJOR HISTOCOMPATIBILITY COMPLEX | TISSUE-SPECIFIC GENES | OLFACTORY RECEPTOR | MAMMALIAN EVOLUTION | Gene Duplication | Multigene Family - genetics | Conserved Sequence - genetics | Vertebrates - genetics | Physical Chromosome Mapping | Genomics | Humans | Long Interspersed Nucleotide Elements - genetics | Mutagenesis - genetics | Synteny | Genes - genetics | Short Interspersed Nucleotide Elements - genetics | RNA, Untranslated - genetics | Sequence Analysis, DNA | Pseudogenes - genetics | Animals | Retroviridae - genetics | DNA Transposable Elements - genetics | Chickens - genetics | Genome | Avian Proteins - genetics | Evolution, Molecular | Birds | Evolution | Genetic diversity | Gene expression | Mammals | Chromosomes | Index Medicus | Research Support; U.S. Gov't; P.H.S | Research Support; U.S. Gov't; Non-P.H.S | Comparative Study | Long Interspersed Nucleotide Elements/genetics | Biology | Avian Proteins/genetics | Vertebrates/genetics | Short Interspersed Nucleotide Elements/genetics | Pseudogenes/genetics | Genetics | Research Support; Non-U.S. Gov't | Biologi | Natural Sciences | Biological Sciences | RNA; Untranslated/genetics | Mutagenesis/genetics | DNA Transposable Elements/genetics | Multigene Family/genetics | Retroviridae/genetics | Sequence Analysis; DNA | Genetik | Genes/genetics | Naturvetenskap | Conserved Sequence/genetics | Evolution; Molecular | Biologiska vetenskaper | Cell and molecular biology | Chickens/genetics | Cell- och molekylärbiologi | phylogenetic analysis | mammalian evolution | tissue-specific genes | brown-norway rat | non-ltr retrotransposons | major histocompatibility complex | olfactory receptor | mouse genome | recent segmental duplications | alcohol-dehydrogenase
Journal Article