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1. Full Text The age of major monocot groups inferred from 800 rbcL sequences
by JANSSEN, THOMAS and BREMER, KARE
Botanical Journal of the Linnean Society, ISSN 0024-4074, 12/2004, Volume 146, Issue 4, pp. 385 - 398
Phylogenetic research on monocots has been extraordinarily active over the past years. With the familial interrelationships being sufficiently understood, the... 
fossils | phylogeny | dating | Cretaceous | Tertiary | NPRS | Phylogeny | Dating | Fossils | CONFIDENCE-INTERVALS | DIVERSIFICATION | MOLECULAR EVOLUTION | ANGIOSPERMS | DIVERGENCE TIMES | PLANT SCIENCES | DIOSCOREALES | FLOWERING PLANTS | 18S RDNA | RBCL
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2. Full Text Angiosperm phylogeny inferred from 18S rDNA, rbcL, and atpB sequences
by SOLTIS, PAMELA S and SOLTIS, DOUGLAS E and CHASE, MARK W and MORT, MARK E and ALBACH, DIRK C and ZANIS, MICHAEL and SAVOLAINEN, VINCENT and HAHN, WILLIAM H and HOOT, SARA B and FAY, MICHAEL F and AXTELL, MICHAEL and SWENSEN, SUSAN M and PRINCE, LINDA M and KRESS, W JOHN and NIXON, KEVIN C and FARRIS, JAMES S
Botanical Journal of the Linnean Society, ISSN 0024-4074, 08/2000, Volume 133, Issue 4, pp. 381 - 461
A phylogenetic analysis of a combined data set for 560 angiosperms and seven outgroups based on three genes, 18S rDNA (1855 bp), rbcL (1428 bp), and atpB (1450... 
classification – molecular systematics – large data sets | Large data sets | Classification | Molecular systematics | COMPLEX PHYLOGENIES | MORPHOLOGICAL DATA | PLASTID GENE RBCL | classification | NUCLEOTIDE-SEQUENCES | CLADISTIC-ANALYSIS | FAMILY | PLANT SCIENCES | RIBOSOMAL DNA-SEQUENCES | large data sets | SAXIFRAGACEAE SENSU-LATO | RNA SEQUENCES | molecular systematics | DATA SETS | rbcL gene | rRNA 18S | atpB gene
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3. Full Text Plastid and mitochondrion genomic sequences from Arctic Chlorella sp. ArM0029B
by Jeong, Haeyoung and Lim, Jong-Min and Park, Jihye and Sim, Young M and Choi, Han-Gu and Lee, Jungho and Jeong, Won-Joong
BMC Genomics, ISSN 1471-2164, 04/2014, Volume 15, Issue 1, pp. 286 - 286
Background: Chorella is the representative taxon of Chlorellales in Trebouxiophyceae, and its chloroplast (cp) genomic information has been thought to depend... 
RBCL SEQUENCES | OVERLAPPING GENES | TREBOUXIOPHYCEAE | CHLOROPLAST GENOME | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | PHYLOGENETIC ANALYSIS | DNA | GENETICS & HEREDITY | GREEN-ALGA HELICOSPORIDIUM | VULGARIS | CHLOROPHYTA | GROUP-I INTRON | Amino Acid Sequence | Multigene Family | Genes, Plant | Introns | Chlorella - classification | Genomics | Genome, Chloroplast | Molecular Sequence Data | Phylogeny | Genome, Plastid | Amino Acid Motifs | Chlorella - genetics | Sequence Alignment | Base Sequence | Gene Rearrangement | Genome, Mitochondrial | Nucleic Acid Conformation | Gene Order | Evolution, Molecular | Chlorella | Mitochondria | Chloroplasts | Genetic aspects | Nucleotide sequencing | Methods | DNA sequencing | Analysis | Evolution | Algae | Genes
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4. Full Text Towards resolving lamiales relationships: Insights from rapidly evolving chloroplast sequences
by Schäferhoff, Bastian and Fleischmann, Andreas and Fischer, Eberhard and Albach, Dirk C and Borsch, Thomas and Heubl, Günther and Müller, Kai F
BMC Evolutionary Biology, ISSN 1471-2148, 2010, Volume 10, Issue 1, pp. 352 - 352
Background: In the large angiosperm order Lamiales, a diverse array of highly specialized life strategies such as carnivory, parasitism, epiphytism, and... 
PARSIMONY JACKKNIFE | SCROPHULARIACEAE | EVOLUTIONARY BIOLOGY | PLASTID MATK | EVOLUTION | PHOSPHATASE-ACTIVITY | PHYLOGENETIC ANALYSIS | DNA | GENETICS & HEREDITY | BREMER SUPPORT | FLOWERING PLANTS | RBCL | Magnoliopsida - genetics | Phylogeny | Magnoliopsida - classification | Chloroplasts - genetics | DNA, Plant - genetics | Evolution, Molecular | Noncoding DNA | Lamiales | Chloroplasts | Physiological aspects | Genetic aspects | Research | Identification and classification | Natural history | Studies | Phylogenetics | Evolution | Genetics | Genomes | Manuscripts | Museum exhibits
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5. Full Text Phylogeny of North American Tolypella (Charophyceae, Charophyta) based on plastid DNA sequences with a description of Tolypella ramosissima sp. nov
by Pérez, William and Hall, John D and McCourt, Richard M and Karol, Kenneth G and Vis, M
Journal of Phycology, ISSN 0022-3646, 10/2014, Volume 50, Issue 5, pp. 776 - 789
Characeae (Charophyceae, Charophyta) contains two tribes with six genera: tribe Chareae with four genera and tribe Nitelleae, which includes Tolypella and... 
oospore | Charophyta | Tolypella | Characeae | North America | atpB, psbC, and rbcL phylogeny | Charophyceae | Tolypella ramosissima sp. nov | Oospore | GROUP-II INTRON | MAXIMUM-LIKELIHOOD | MIXED MODELS | Tolypella ramosissima sp nov | atpB | GREEN-ALGAE | GENE-SEQUENCES | PLANT SCIENCES | psbC | RBCL SEQUENCES | OOSPORE WALL ORNAMENTATION | NITELLA CHARALES | MARINE & FRESHWATER BIOLOGY | TAXONOMIC REEXAMINATION | and rbcL phylogeny | Genetic research | Nucleotide sequencing | Phylogeny | Analysis | DNA | DNA sequencing
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6. Full Text Phylogeny of Gracilariaceae (Rhodophyta): evidence from plastid and mitochondrial nucleotide sequences
by Lyra, Goia de M and Costa, Emmanuelle da S and Jesus, Priscila B and Matos, João Carlos G and Caires, Taiara A and Oliveira, Mariana C and Oliveira, Eurico C and Xi, Zhenxiang and Nunes, José Marcos de C and Davis, Charles C and Müller, K
Journal of Phycology, ISSN 0022-3646, 04/2015, Volume 51, Issue 2, pp. 356 - 366
Gracilariaceae are mostly pantropical red algae and include ~230 species in seven genera. Infrafamilial classification of the group has long been based on... 
Hydropuntia | taxonomy | Gracilariopsis | systematics | Gracilaria | Systematics | Taxonomy | MARKER | PACIFIC | PLANT SCIENCES | BOOTSTRAP | RED ALGAE RHODOPHYTA | MODELS | DNA | MARINE & FRESHWATER BIOLOGY | DIVERSITY | GIGARTINALES | RBCL | Analysis | Phylogeny
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7. Full Text Angiosperm phylogeny based on matK sequence information
by Hilu, Khidir W and Borsch, Thomas and Muller, Kai and Soltis, Douglas E and Soltis, Pamela S and Savolainen, Vincent and Chase, Mark W and Powell, Martyn P and Alice, Lawrence A and Evans, Rodger and Sauquet, Herve and Neinhuis, Christoph and Slotta, Tracey A. B and Rohwer, Jens G and Campbell, Christopher S and Chatrou, Lars W
American Journal of Botany, ISSN 0002-9122, 12/2003, Volume 90, Issue 12, pp. 1758 - 1776
Plastid matK gene sequences for 374 genera representing all angiosperm orders and 12 genera of gymnosperms were analyzed using parsimony (MP) and Bayesian... 
Datasets | Taxa | Systematics | Parsimony | Ribosomal DNA | Phylogenetics | Evolution | Phylogeny | Plants | Plastids | Angiosperms | matK | phylogeny | Bayesian inference | systematics | angiosperms | SYNAPOMORPHY ANALYSIS RASA | PLASTID GENE RBCL | PLANT SYSTEMATICS | NUCLEOTIDE-SEQUENCES | PLANT SCIENCES | MOLECULAR-DATA SETS | BASAL ANGIOSPERMS | FLOWERING PLANTS | NONCODING CHLOROPLAST DNA | 18S RDNA | 3 GENOMIC COMPARTMENTS | Genetic aspects | Research | Phylogeny (Botany) | flowering plants | 18s rdna | nucleotide-sequences | plastid gene rbcl | bayesian-inference | basal angiosperms | molecular-data sets | 3 genomic compartments | noncoding chloroplast dna | parsimony analysis
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8. Full Text Noncoding plastid trnT‐trnF sequences reveal a well resolved phylogeny of basal angiosperms
by Borsch, T and Hilu, K. W and Quandt, D and Wilde, V and Neinhuis, C and Barthlott, W
Journal of Evolutionary Biology, ISSN 1010-061X, 07/2003, Volume 16, Issue 4, pp. 558 - 576
Recent contributions from DNA sequences have revolutionized our concept of systematic relationships in angiosperms. However, parts of the angiosperm tree... 
secondary structure | noncoding DNA | angiosperms | group I intron | trnT‐trnF | phylogeny | molecular evolution | chloroplast genome | Noncoding DNA | Molecular evolution | trnT-trnF | Phylogeny | Group I intron | Secondary structure | Chloroplast genome | Angiosperms | MOLECULAR SYSTEMATICS | CHLOROPLAST DNA | SEED PLANT PHYLOGENY | GROUP-I INTRONS | NUCLEOTIDE-SEQUENCES | EVOLUTIONARY BIOLOGY | INTERGENIC SPACER | GENETICS & HEREDITY | FLOWERING PLANTS | ECOLOGY | GENE RBCL | 3 GENOMIC COMPARTMENTS | EXTANT GYMNOSPERMS | Base Sequence | DNA, Chloroplast - genetics | Molecular Sequence Data | Magnoliopsida - genetics | Sequence Analysis, DNA | RNA, Transfer | Evolution, Molecular
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9. Full Text Phylogeny, character evolution, and biogeography of Cuscuta (dodders; Convolvulaceae) inferred from coding plastid and nuclear sequences
by García, Miguel A and Costea, Mihai and Kuzmina, Maria and Stefanović, Saša
American Journal of Botany, ISSN 0002-9122, 04/2014, Volume 101, Issue 4, pp. 670 - 690
• Premise of the study: The parasitic genus Cuscuta, containing some 200 species circumscribed traditionally in three subgenera, is nearly cosmopolitan,... 
reticulate evolution | molecular phylogeny | character evolution | nrLSU | Cuscuta | parasitic plants | rbcL | Convolvulaceae | Molecular phylogeny | Character evolution | NrLSU | Parasitic plants | RbcL | Reticulate evolution | DNA-SEQUENCES | MAJOR LINEAGES | PLANT SCIENCES | SUBGENUS GRAMMICA | COMPLEX CONVOLVULACEAE | GENOME EVOLUTION | SYSTEMATICS | PLANTS | HOLOCENTRIC CHROMOSOMES | PARASITIC GENUS CUSCUTA | NORTH-AMERICA | Geography | Ribulose-Bisphosphate Carboxylase - genetics | Molecular Sequence Data | Phylogeny | DNA Barcoding, Taxonomic | Sequence Analysis, DNA | Biological Evolution | Cell Nucleus - genetics | Polymerase Chain Reaction | Plastids - genetics | Cuscuta - genetics | DNA, Plant - genetics | DNA, Ribosomal - genetics | Phylogeny (Botany) | Research
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10. Full Text DNA sequences from Miocene fossils: an ndhF sequence of Magnolia latahensis (Magnoliaceae) and an rbcL sequence of Persea pseudocarolinensis (Lauraceae)
by Kim, Sangtae and Soltis, Douglas E and Soltis, Pamela S and Suh, Youngbae
American Journal of Botany, ISSN 0002-9122, 04/2004, Volume 91, Issue 4, pp. 615 - 620
We report a partial ndhF sequence (1528 bp) of Magnolia latahensis and a partial rbcL sequence (699 bp) of Persea pseudocarolinensis from the Clarkia fossil... 
Taxa | Biological taxonomies | Systematics | DNA | Parsimony | Phylogenetics | Nucleotide sequences | Plants | Codons | Sequencing | Fossils | Clarkia | fossil DNA | Magnolia latahensis | Persea pseudocarolinensis | ndhF | Miocene | rbcL | Fossil DNA | RDNA | NUCLEAR GENOMES | CHLOROPLAST | ANGIOSPERMS | PLANT SCIENCES | PHYLOGENETIC-RELATIONSHIPS | DEOXYRIBONUCLEIC ACID | PLANTS | Genetic research | Toiletries industry | Comparative analysis
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11. Full Text A genetic diversity assessment of Halymenia malaysiana (Halymeniaceae, Rhodophyta) from Malaysia and the Philippines based on COI-5P and rbcL sequences
by Tan, Pui-Ling and Lim, Phaik-Eem and Lin, Showe-Mei and Phang, Siew-Moi and Draisma, Stefano G.A and Liao, Lawrence M
Journal of Applied Phycology, ISSN 0921-8971, 12/2018, Volume 30, Issue 6, pp. 3445 - 3454
Little is known about the genetic diversity and phylogeographic structure of seaweeds in Southeast Asia particularly for Halymenia species. Herein, molecular... 
Life Sciences | Rhodophyta | Halymenia malaysiana | COI-5P | Genetic variation | Phylogeography | Red algae | Freshwater & Marine Ecology | Plant Physiology | Ecology | rbc L | Plant Sciences | rbcL | COMPUTER-PROGRAM | MARKERS | PHAEOPHYCEAE | MITOCHONDRIAL COX1 | RED | FLORIDEOPHYCEAE | SOUTHEAST-ASIA | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | MARINE & FRESHWATER BIOLOGY | ALGAE | DNA BARCODE | SP-NOV | Haplotypes | Divergence | Populations | Nucleotide sequence | Genetic structure | Algae | Genetic diversity | Low level | Population genetics | Seaweeds | Molecular chains | Gene sequencing | DNA | Species | Deoxyribonucleic acid--DNA
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12. A new classification and linear sequence of extant gymnosperms
by Christenhusz, Maarten J.M and Reveal, James L and Farjon, Aljos and Gardner, Martin F and Mill, Robert R and Chase, Mark W
Phytotaxa, ISSN 1179-3155, 02/2011, Volume 19, pp. 55 - 70
A new classification and linear sequence of the gymnosperms based on previous molecular and morphological phylogenetic and other studies is presented.... 
APG III | PHYLOGENY | NUCLEAR | RIBOSOMAL-RNA SEQUENCES | SEED PLANT EVOLUTION | FAMILIES | PODOCARPACEAE | CHLOROPLAST | GENE RBCL | CUPRESSACEAE | PLANT SCIENCES
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13. Full Text A Phylogeny of the Violaceae (Malpighiales) Inferred from Plastid DNA Sequences: Implications for Generic Diversity and Intrafamilial Classification
by Gregory A. Wahlert and Thomas Marcussen and Juliana de Paula-Souza and Min Feng and Harvey E. Ballard , Jr
Systematic Botany, ISSN 0363-6445, 2014, Volume 39, Issue 1, pp. 239 - 252
Abstract The Violaceae consist of 1,000–1,100 species of herbs, shrubs, lianas, and trees that are placed in 22 recognized genera. In this study we tested the... 
Rinorea | Non-monophyletic genus | rbcL | Viola | trnL/trnL-F | zygomorphy | Zygomorphy | TrnL/trnLF | RbcL | RINOREA VIOLACEAE | CHLOROPLAST DNA | MELICYTUS VIOLACEAE | NAME | PLANT SCIENCES | EVOLUTIONARY BIOLOGY | PLANTS | Plant genetics | Physiological aspects | Genetic research | Genetic aspects | Research | Nucleotide sequencing | Dicotyledons | Phylogeny | DNA sequencing | Biological diversity
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14. Full Text Complete chloroplast genome sequences of Lilium: Insights into evolutionary dynamics and phylogenetic analyses
by Du, Yun-Peng and Bi, Yu and Yang, Feng-Ping and Zhang, Ming-Fang and Chen, Xu-Qing and Xue, Jing and Zhang, Xiu-Hai
Scientific Reports, ISSN 2045-2322, 12/2017, Volume 7, Issue 1, pp. 5751 - 10
Lilium is a large genus that includes approximately 110 species distributed throughout cold and temperate regions of the Northern Hemisphere. The species-level... 
LILIALES | NUCLEAR | DIVERSIFICATION | MULTIDISCIPLINARY SCIENCES | ALGORITHM | LILIACEAE | TORTOISE | MODEL | TRANSCRIBED SPACER REGION | MOLECULAR PHYLOGENY | RBCL | Phylogenetics | Genomes | Single-nucleotide polymorphism | Phylogeny | Chloroplasts | Species
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