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Bioinformatics, ISSN 1367-4803, 09/2018, Volume 34, Issue 18, pp. 3094 - 3100
.... Existing alignment programs are unable or inefficient to process such data at scale, which presses for the development of new alignment algorithms... 
READ ALIGNMENT | RNA | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | LONG SEQUENCES | ALGORITHM | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | LIBRARY | GENERATION | GENOME | BURROWS-WHEELER TRANSFORM | Quantitative Biology - Genomics | Original Papers
Journal Article
Bioinformatics, ISSN 1367-4803, 10/2012, Volume 28, Issue 20, pp. 2678 - 2679
Motivation: The sequence alignment/map (SAM) and the binary alignment/map (BAM) formats have become the standard method of representation of nucleotide sequence alignments for next-generation sequencing data... 
RNA-SEQ | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | READS | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | Sequence Alignment - standards | Algorithms | Genomics | Humans | High-Throughput Nucleotide Sequencing | Software | Quality Control
Journal Article
Genome biology, ISSN 1474-760X, 2014, Volume 15, Issue 11, pp. 524 - 524
Whole-genome sequences are now available for many microbial species and clades, however existing whole-genome alignment methods are limited in their ability to perform sequence comparisons of multiple... 
MYCOBACTERIUM-TUBERCULOSIS | MULTIPLE-SEQUENCE ALIGNMENT | READ ALIGNMENT | MAXIMUM-LIKELIHOOD | HIGH-THROUGHPUT | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | ESCHERICHIA-COLI | MOLECULAR EVOLUTION | GENETICS & HEREDITY | WHOLE GENOMES | CLOSTRIDIUM-DIFFICILE | BURROWS-WHEELER TRANSFORM
Journal Article
by Li, H and Homer, N
Briefings in bioinformatics, ISSN 1477-4054, 2010, Volume 11, Issue 5, pp. 473 - 483
Journal Article
PloS one, ISSN 1932-6203, 2015, Volume 10, Issue 4, p. e0126409
Journal Article
Bioinformatics, ISSN 1367-4803, 08/2010, Volume 26, Issue 20, pp. 2534 - 2540
.... This triggers the need for fast and accurate alignment software. Common techniques often restrict indels in the alignment to improve speed, whereas more flexible aligners are too slow for large- scale applications... 
BIOTECHNOLOGY & APPLIED MICROBIOLOGY | ULTRAFAST | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | SHORT READ ALIGNMENT | GENOME | PROGRAM | BURROWS-WHEELER TRANSFORM | Sequence Alignment - methods | Software | Algorithms | Sequence Analysis, DNA - methods | Base Sequence | Life Sciences | Quantitative Methods | Bioinformatics | Computer Science | Original Paper
Journal Article
RNA (Cambridge), ISSN 1469-9001, 2016, Volume 22, Issue 8, pp. 1120 - 1138
Journal Article
Theoretical Computer Science, ISSN 0304-3975, 02/2018, Volume 710, pp. 148 - 157
Journal Article