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microbiology (226) 226
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1. Full Text Reverse gyrase is essential for microbial growth at 95 °C
by Lipscomb, Gina L and Hahn, Elin M and Crowley, Alexander T and Adams, Michael W. W and Univ. of Georgia, Athens, GA (United States)
Extremophiles, ISSN 1431-0651, 05/2017, Volume 21, Issue 3, pp. 603 - 608
Reverse gyrase is an enzyme that induces positive supercoiling in closed circular DNA in vitro. It is unique to thermophilic organisms and found without... 
Pyrococcus furiosus | Hyperthermophile | Reverse gyrase | Archaea | Archaeal Proteins - metabolism | Pyrococcus furiosus - physiology | Extreme Environments | DNA Topoisomerases, Type I - metabolism | Cell Division | Gene Deletion | DNA Topoisomerases, Type I - genetics | Enzyme Stability | Archaeal Proteins - genetics | Hot Temperature | Pyrococcus furiosus - enzymology | Pyrococcus furiosus - genetics | Microbiology | Biochemistry & Molecular Biology
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2. Full Text Direct observation of DNA overwinding by reverse gyrase
by Taisaku Ogawa and Katsunori Yogo and Shou Furuike and Kazuo Sutoh and Akihiko Kikuchi and Kazuhiko Kinosita
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 6/2015, Volume 112, Issue 24, pp. 7495 - 7500
Reverse gyrase, found in hyperthermophiles, is the only enzyme known to overwind (introduce positive supercoils into) DNA. The ATP-dependent activity, detected... 
DNA overwinding | Magnetic tweezers | Topoisomerase | Reverse gyrase | Torsion | magnetic tweezers | MECHANISM | MULTIDISCIPLINARY SCIENCES | HIGH-TEMPERATURE | I TOPOISOMERASE | SUPERCOILED DNA | reverse gyrase | torsion | SUBSTRATE | topoisomerase | SULFOLOBUS-ACIDOCALDARIUS | ATP | Archaeal Proteins - metabolism | Biophysical Phenomena | DNA Topoisomerases, Type I - metabolism | Sulfolobus - enzymology | Models, Molecular | Hot Temperature | Magnetics | Hydrolysis | Thermodynamics | Adenosine Triphosphate - metabolism | DNA, Superhelical - chemistry | Kinetics | DNA, Superhelical - metabolism | Nucleic Acid Conformation | Topoisomerases | Bacteria, Thermophilic | Genetic aspects | Nucleotide sequencing | Health aspects | Methods | DNA sequencing | Biological Sciences
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3. Full Text Torsional stress in DNA limits collaboration among reverse gyrase molecules
by Ogawa, Taisaku and Sutoh, Kazuo and Kikuchi, Akihiko and Kinosita, Kazuhiko
The FEBS Journal, ISSN 1742-464X, 04/2016, Volume 283, Issue 8, pp. 1372 - 1384
Reverse gyrase is an enzyme that can overwind (introduce positive supercoils into) DNA using the energy obtained from ATP hydrolysis. The enzyme is found in... 
DNA overwinding | mismatched base pairs | torsional stress | reverse gyrase | DNA topoisomerase | Hydrolysis | Biomechanical Phenomena | DNA Topoisomerases, Type I - metabolism | Sulfolobus - enzymology | Adenosine Triphosphate - metabolism | Base Sequence | DNA, Superhelical - chemistry | Cooperative Behavior | Models, Molecular | Molecular Sequence Data | Nucleic Acid Conformation | Sequence Homology, Nucleic Acid | Enzymes | DNA | Biophysics | Molecular biology | Deoxyribonucleic acid--DNA | Viscosity | Temperature requirements | Stress concentration | Temperature | Torsional stress | Energy use | Overwinding | Saturation | Base pairs | Hyperthermophiles | Bubbles | Friction | Microscopy | Energy | Temperature effects | Collaboration | Reverse gyrase | Acceleration | ATP
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4. Full Text Direct observation of positive supercoils introduced by reverse gyrase through atomic force microscopy
by Li, Dawei and Lv, Bei and wang, Qiang and Liu, Yun and Zhuge, Qiang
Bioorganic & Medicinal Chemistry Letters, ISSN 0960-894X, 09/2017, Volume 27, Issue 17, pp. 4086 - 4090
It is demonstrated in our studies that positive DNA supercoils can be induced into both pBR322 vector and an artificial synthesized mini-plasmid DNA by reverse... 
Positive supercoil | DNA writhe | Reverse gyrases | AFM examination | DNA-STRUCTURE | VISUALIZATION | CHEMISTRY, MEDICINAL | CRUCIFORM | PLASMID DNA | DYNAMICS | CHEMISTRY, ORGANIC | G-QUADRUPLEX | Microscopy, Atomic Force | DNA Topoisomerases, Type I - metabolism | DNA, Superhelical - biosynthesis | DNA Topoisomerases, Type I - chemistry | DNA, Superhelical - chemistry | Atomic force microscopy | Enzymes | Nucleases | Analysis | Microscope and microscopy | DNA | Forests and forestry
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5. Full Text Reverse gyrase functions in genome integrity maintenance by protecting DNA breaks in vivo
by Han, Wenyuan and Feng, Xu and She, Qunxin
International Journal of Molecular Sciences, ISSN 1661-6596, 07/2017, Volume 18, Issue 7, p. 1340
Reverse gyrase introduces positive supercoils to circular DNA and is implicated in genome stability maintenance in thermophiles. The extremely thermophilic... 
MMS | Sulfolobus | Reverse gyrase | CRISPRi approach | Genomic DNA degradation | Genomic DNA breakage | METHYLATING AGENTS | PROTEIN | TOPOISOMERASES | BIOCHEMISTRY & MOLECULAR BIOLOGY | ISLANDICUS | genomic DNA degradation | DOUBLE-STRAND BREAKS | SACCHAROMYCES-CEREVISIAE | CRENARCHAEA | CHEMISTRY, MULTIDISCIPLINARY | reverse gyrase | INTERFERENCE | genomic DNA breakage | ARCHAEON SULFOLOBUS-SOLFATARICUS | HYPERTHERMOPHILES | Archaeal Proteins - metabolism | DNA, Archaeal - genetics | Genomic Instability | DNA Topoisomerases, Type I - metabolism | Sulfolobus - enzymology | RNA, Messenger - genetics | DNA Topoisomerases, Type I - genetics | DNA, Archaeal - metabolism | Sulfolobus - genetics | CRISPR-Cas Systems | DNA Breaks | Archaeal Proteins - genetics | Sulfolobus - metabolism
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6. Full Text Inhibition of DNA gyrase and DNA topoisomerase IV of Staphylococcus aureus and Escherichia coli by aminocoumarin antibiotics
by Alt, Silke and Mitchenall, Lesley A and Maxwell, Anthony and Heide, Lutz
Journal of Antimicrobial Chemotherapy, ISSN 0305-7453, 9/2011, Volume 66, Issue 9, pp. 2061 - 2069
Objectives Aminocoumarin antibiotics are potent inhibitors of bacterial DNA gyrase. We investigated the inhibitory and antibacterial activity of naturally... 
MICs | Supercoiling assays | Decatenation assays | Potassium glutamate | INFECTIOUS DISEASES | potassium glutamate | decatenation assays | QUINOLONES | MICROBIOLOGY | SIMOCYCLINONE D8 | supercoiling assays | II TOPOISOMERASES | OVEREXPRESSION | IN-VITRO | BIOSYNTHESIS | FLUOROQUINOLONES | RESISTANCE | PHARMACOLOGY & PHARMACY | MUTASYNTHESIS | CLOROBIOCIN | Aminocoumarins - pharmacology | Staphylococcus aureus - genetics | Staphylococcus aureus - enzymology | Escherichia coli - enzymology | Escherichia coli - drug effects | Structure-Activity Relationship | Reverse Transcriptase Polymerase Chain Reaction | Microbial Sensitivity Tests | Topoisomerase Inhibitors - pharmacology | DNA Gyrase - genetics | Escherichia coli - genetics | Anti-Bacterial Agents - chemistry | Topoisomerase II Inhibitors | Cloning, Molecular | DNA Topoisomerase IV - antagonists & inhibitors | DNA, Superhelical - chemistry | Glutamates - pharmacology | Anti-Bacterial Agents - pharmacology | Bacterial Proteins - biosynthesis | DNA Topoisomerase IV - genetics | Sodium Glutamate - pharmacology | Aminocoumarins - chemistry | Staphylococcus aureus - drug effects | Bacterial Proteins - isolation & purification
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7. Full Text Adenosine 5′-O-(3-thio)triphosphate (ATPγS) Promotes Positive Supercoiling of DNA by T. maritima Reverse Gyrase
by Jungblut, Stefan P and Klostermeier, Dagmar
Journal of Molecular Biology, ISSN 0022-2836, 2007, Volume 371, Issue 1, pp. 197 - 209
Reverse gyrases are topoisomerases that catalyze ATP-dependent positive supercoiling of circular covalently closed DNA. They consist of an N-terminal... 
non-hydrolyzable ATP analog | topoisomerase | nucleotide-driven conformational changes | reverse gyrase | DEAD-BOX PROTEIN | MECHANISM | NUCLEOTIDE HYDROLYSIS | RNA HELICASE | CRYSTAL-STRUCTURE | BIOCHEMISTRY & MOLECULAR BIOLOGY | ESCHERICHIA-COLI | COMPARATIVE GENOMICS | NUCLEOSIDE PHOSPHOROTHIOATES | BINDING | Protein Structure, Tertiary | Recombinant Proteins - metabolism | DNA Topoisomerases, Type I - metabolism | Bacterial Proteins - chemistry | Bacterial Proteins - genetics | DNA Topoisomerases, Type I - chemistry | DNA Topoisomerases, Type I - genetics | Models, Molecular | Recombinant Proteins - chemistry | Recombinant Proteins - genetics | Thermotoga maritima - genetics | Nucleotides - metabolism | Plasmids - metabolism | Thermotoga maritima - enzymology | Adenosine Triphosphate - analogs & derivatives | Adenosine Triphosphate - metabolism | DNA, Superhelical - chemistry | Plasmids - genetics | Bacterial Proteins - metabolism | Mutation | DNA, Superhelical - metabolism | Nucleic Acid Conformation | Bacterial Proteins - isolation & purification | DNA Topoisomerases, Type I - isolation & purification
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8. Full Text Transformation of a thermostable g-quadruplex structure into DNA duplex driven by reverse gyrase
by Li, Dawei and Wang, Qiang and Liu, Yun and Liu, Kun and Zhuge, Qiang and Lv, Bei
Molecules, ISSN 1420-3049, 11/2017, Volume 22, Issue 11, p. 2021
Reverse gyrase is a topoisomerase that can introduce positive supercoils to its substrate DNA. It is demonstrated in our studies that a highly thermal stable... 
DNA supercoiling | Topoisomerase | Atomic Force Microscope examination | Topoisomer | G-quadruplex | VISUALIZATION | NON-B DNA | BIOCHEMISTRY & MOLECULAR BIOLOGY | I TOPOISOMERASE | GENOME STABILITY | CHEMISTRY, MULTIDISCIPLINARY | topoisomer | ATOMIC-FORCE MICROSCOPY | KINETICS | PLASMID DNA | topoisomerase | Thermodynamics | G-Quadruplexes | DNA - chemistry | Microscopy, Atomic Force - methods | DNA - metabolism | DNA Topoisomerases, Type I - metabolism | DNA structure | Atomic force microscopy | Transformation | Overwinding | Gel electrophoresis | Disintegration | DNA topoisomerase | Substrates | Hyperthermophiles | Microscopy | Reverse gyrase | Endonuclease | Atomic structure | Plasmid DNA | Deoxyribonucleic acid--DNA | Conformation
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9. Full Text Reverse gyrase is essential for microbial growth at 95 degrees C
by Lipscomb, GL and Hahn, EM and Crowley, AT and Adams, MWW
EXTREMOPHILES, ISSN 1431-0651, 05/2017, Volume 21, Issue 3, pp. 603 - 608
Reverse gyrase is an enzyme that induces positive supercoiling in closed circular DNA in vitro. It is unique to thermophilic organisms and found without... 
Hyperthermophile | HYPERTHERMOPHILIC ARCHAEON | Archaea | BIOCHEMISTRY & MOLECULAR BIOLOGY | MICROBIOLOGY | GENOME STABILITY | TEMPERATURE | ARCHAEON PYROCOCCUS-FURIOSUS | GENES | Pyrococcus furiosus | DNA TOPOLOGY | KEY ROLE | Reverse gyrase | TOPOISOMERASE
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10. Full Text Crystal structures of Thermotoga maritima reverse gyrase: Inferences for the mechanism of positive DNA supercoiling
by Rudolph, Markus G and Del Toro Duany, Yoandris and Jungblut, Stefan P and Ganguly, Agneyo and Klostermeier, Dagmar
Nucleic Acids Research, ISSN 0305-1048, 01/2013, Volume 41, Issue 2, pp. 1058 - 1070
Reverse gyrase is an ATP-dependent topoisomerase that is unique to hyperthermophilic archaea and eubacteria. The only reverse gyrase structure determined to... 
NUCLEOTIDE | HELICASE-LIKE DOMAIN | COMPLEX | DEAD-BOX PROTEIN | BIOCHEMISTRY & MOLECULAR BIOLOGY | TOPOISOMERASE-I | LATCH | HYPERTHERMOPHILE | SINGLE-STRANDED-DNA | BINDING | ATP | Protein Structure, Tertiary | DNA Helicases - chemistry | Zinc Fingers | DNA Topoisomerases, Type I - metabolism | Bacterial Proteins - chemistry | DNA Topoisomerases, Type I - chemistry | Models, Molecular | Crystallography, X-Ray | Thermotoga maritima - enzymology | DNA, Superhelical - chemistry | Bacterial Proteins - metabolism | DNA, Superhelical - metabolism | Binding Sites | DNA helicase | DNA-binding protein | Molecular modelling | reverse gyrase | Cooperation | DNA | hyperthermophilic archaea | DNA topoisomerase | Supercoiling | Catalysis | Zinc finger proteins | Crystal structure | Nucleic Acid Enzymes
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11. Full Text The mechanism of negative DNA supercoiling: A cascade of DNA-induced conformational changes prepares gyrase for strand passage
by Gubaev, Airat and Klostermeier, Dagmar
DNA Repair, ISSN 1568-7864, 04/2014, Volume 16, Issue 1, pp. 23 - 34
DNA topoisomerases inter-convert different DNA topoisomers in the cell. They catalyze the introduction or relaxation of DNA supercoils, as well as catenation... 
Strand passage | Topoisomerase mechanism | DNA topology | Negative supercoiling | Molecular machine | ATP-driven conformational changes | REVERSE GYRASE | TOPOISOMERASE-II-ALPHA | CRYSTAL-STRUCTURE | ESCHERICHIA-COLI DNA | NUCLEOTIDE-BINDING | BACILLUS-SUBTILIS GYRASE | STEADY-STATE ANALYSIS | SUPERHELICAL TURNS | GENETICS & HEREDITY | TOXICOLOGY | C-TERMINAL-DOMAIN | ATP-OPERATED CLAMP | Protein Structure, Tertiary | DNA Topoisomerase IV - chemistry | DNA Topoisomerase IV - metabolism | Bacteria - metabolism | DNA Gyrase - chemistry | DNA, Bacterial - metabolism | Models, Molecular | DNA, Bacterial - chemistry | Bacteria - genetics | DNA Gyrase - metabolism | DNA, Superhelical - chemistry | Bacteria - classification | Bacteria - enzymology | Protein Conformation | DNA, Superhelical - metabolism | Nucleic Acid Conformation | Binding Sites | DNA
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12. Full Text Reverse Gyrase Transiently Unwinds Double-Stranded DNA in an ATP-Dependent Reaction
by Ganguly, Agneyo and del Toro Duany, Yoandris and Klostermeier, Dagmar
Journal of Molecular Biology, ISSN 0022-2836, 01/2013, Volume 425, Issue 1, pp. 32 - 40
Reverse gyrase is a unique DNA topoisomerase that catalyzes the introduction of positive supercoils into DNA in an ATP-dependent reaction. It consists of a... 
topoisomerase | helicase | positive DNA supercoiling | reverse gyrase | unwinding | HELICASE-LIKE DOMAIN | PROTEIN | MECHANISM | BIOCHEMISTRY & MOLECULAR BIOLOGY | I TOPOISOMERASE | HYDROLYSIS | LATCH | BINDING | CYCLE | Protein Structure, Tertiary | DNA Topoisomerases, Type I - metabolism | Bacterial Proteins - genetics | DNA Topoisomerases, Type I - chemistry | DNA Topoisomerases, Type I - genetics | Models, Molecular | DNA, Superhelical - genetics | Thermotoga maritima - genetics | Thermotoga maritima - enzymology | DNA - genetics | DNA Helicases - metabolism | DNA, Bacterial - genetics | Adenosine Triphosphate - metabolism | Protein Binding | Bacterial Proteins - metabolism | DNA Helicases - genetics | DNA | Analysis
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13. Full Text A hot story from comparative genomics: reverse gyrase is the only hyperthermophile-specific protein
by Forterre, Patrick
Trends in Genetics, ISSN 0168-9525, 2002, Volume 18, Issue 5, pp. 236 - 237
I have looked for proteins that are present in all hyperthermophile genomes, but absent from all mesophile or thermophile genomes by using the phylogenetic... 
reverse gyrase | high temperature adaptation | hyperthermophile | thermophile | comparative genomics | BACTERIA | ARCHAEA | CRENARCHAEON | MEMBRANE | GENETICS & HEREDITY | TOPOISOMERASE | Genome, Bacterial | Species Specificity | Genome, Archaeal | DNA Topoisomerases, Type I - genetics | Bacteria - enzymology | Archaea - genetics | Hot Temperature | Archaea - enzymology | Bacteria - genetics
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14. Full Text Origin and evolution of DNA topoisomerases
by Forterre, Patrick and Gribaldo, Simonetta and Gadelle, Danièle and Serre, Marie-Claude
Biochimie, ISSN 0300-9084, 2007, Volume 89, Issue 4, pp. 427 - 446
The DNA topoisomerases are essential for DNA replication, transcription, recombination, as well as for chromosome compaction and segregation. They may have... 
Evolution | Topoisomerases | REVERSE GYRASE | EUKARYOTIC TOPOISOMERASE | CRYSTAL-STRUCTURE | BIOCHEMISTRY & MOLECULAR BIOLOGY | ESCHERICHIA-COLI | I TOPOISOMERASE | DOUBLE-STRAND BREAKS | topoisomerases | evolution | POSITIVELY SUPERCOILED DNA | N-TERMINAL FRAGMENT | ARCHAEON SULFOLOBUS-SOLFATARICUS | HORIZONTAL GENE-TRANSFER | Bacterial Proteins - genetics | DNA Topoisomerases, Type I - genetics | Viral Proteins - genetics | Phylogeny | DNA Topoisomerases, Type I - classification | Animals | DNA Gyrase - genetics | DNA Gyrase - classification | DNA Replication - genetics | Archaeal Proteins - genetics | DNA Topoisomerases, Type II - genetics | DNA Topoisomerases, Type II - classification | Evolution, Molecular | DNA replication | Analysis | Genes | Genomics | DNA | Bacteria | Genetic transcription | Biochemistry, Molecular Biology | DNA Topoisomerases, Type I | DNA Replication | DNA Gyrase | Viral Proteins | Bacterial Proteins | Life Sciences | DNA Topoisomerases, Type II | Genetics | Archaeal Proteins
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15. Full Text TopR2, the Second Reverse Gyrase of Sulfolobus solfataricus, Exhibits Unusual Properties
by Bizard, Anna and Garnier, Florence and Nadal, Marc
Journal of Molecular Biology, ISSN 0022-2836, 2011, Volume 408, Issue 5, pp. 839 - 849
Whereas reverse gyrase is considered as a strong marker of thermophily, the function of this peculiar type IA topoisomerase still remains to be elucidated. The... 
DNA supercoiling | topoisomerase | reverse gyrase | Archaea | thermophile | HELICASE-LIKE DOMAIN | MECHANISM | BIOCHEMISTRY & MOLECULAR BIOLOGY | STRAND BINDING-PROTEIN | I TOPOISOMERASE | DNA TOPOISOMERASE-III | CLEAVAGE | GENE | PURIFICATION | THERMOTOGA-MARITIMA | ATP | Sulfolobus solfataricus - enzymology | Adenosine Triphosphate - chemistry | Sulfolobus solfataricus - genetics | DNA Topoisomerases, Type I - chemistry | DNA Topoisomerases, Type I - genetics | DNA, Superhelical - chemistry | Enzymes | Exhibitions | DNA | Life Sciences | Microbiology and Parasitology | Biochemistry, Molecular Biology
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