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1. Full Text Structure of the zinc-binding domain of an essential component of the hepatitis C virus replicase
by Tellinghuisen, Timothy L and Marcotrigiano, Joseph and Rice, Charles M and Brookhaven National Laboratory (BNL) National Synchrotron Light Source (NSLS)
Nature, ISSN 0028-0836, 05/2005, Volume 435, Issue 7040, pp. 374 - 379
Hepatitis C virus (HCV) is a human pathogen affecting nearly 3% of the world's population. Chronic infections can lead to cirrhosis and liver cancer. The RNA... 
CELL-CULTURE | BOND | RNA REPLICATION | NS5A | NONSTRUCTURAL PROTEIN 5A | MULTIDISCIPLINARY SCIENCES | Disulfides - metabolism | Protein Structure, Tertiary | Zinc - metabolism | RNA Replicase - metabolism | Hepacivirus - genetics | Models, Molecular | Viral Nonstructural Proteins - genetics | Crystallography, X-Ray | Amino Acid Motifs | Hepacivirus - enzymology | Viral Nonstructural Proteins - chemistry | Disulfides - chemistry | RNA Replicase - chemistry | Protein Structure, Quaternary | Viral Nonstructural Proteins - metabolism | Binding Sites | Dimerization | Proteins | Hepatitis | Zinc | Binding sites | Index Medicus | CHEMICAL BONDS | HEPATITIS | BASIC BIOLOGICAL SCIENCES | ZINC COMPOUNDS | ENZYMES | national synchrotron light source | VIRUSES
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2. Full Text In-ice evolution of RNA polymerase ribozyme activity
by Attwater, James and Wochner, Aniela and Holliger, Philipp
Nature Chemistry, ISSN 1755-4330, 2013, Volume 5, Issue 12, pp. 1011 - 1018
Mechanisms of molecular self-replication have the potential to shed light on the origins of life. In particular, self-replication through RNA-catalysed... 
CATALYSIS | CHEMISTRY, MULTIDISCIPLINARY | ORIGIN | Cold Temperature | RNA Replicase - genetics | Adaptation, Biological - genetics | RNA Replicase - metabolism | RNA, Catalytic - metabolism | Molecular Sequence Data | Ice | RNA - chemistry | RNA - genetics | RNA Replicase - chemistry | Base Sequence | Models, Genetic | RNA, Catalytic - genetics | Nucleic Acid Conformation | RNA, Catalytic - chemistry | Evolution, Molecular | RNA - metabolism | Index Medicus
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3. Full Text Molecular insights into replication initiation by Qβ replicase using ribosomal protein S1
by Takeshita, Daijiro and Yamashita, Seisuke and Tomita, Kozo
Nucleic Acids Research, ISSN 0305-1048, 09/2014, Volume 42, Issue 16, pp. 10809 - 10822
Ribosomal protein S1, consisting of six contiguous OB-folds, is the largest ribosomal protein and is essential for translation initiation in Escherichia coli.... 
M-SITE | RNA-BINDING | QBETA REPLICASE | MESSENGER-RNA | Q(BETA) RNA | BIOCHEMISTRY & MOLECULAR BIOLOGY | ESCHERICHIA-COLI | TRANSLATION INITIATION | SECONDARY STRUCTURE | TEMPLATE | FACTORS EF-TU | Ribosomal Proteins - chemistry | RNA, Viral - biosynthesis | Models, Molecular | Escherichia coli Proteins - metabolism | Q beta Replicase - metabolism | Q beta Replicase - chemistry | Protein Folding | Ribosomal Proteins - metabolism | RNA, Viral - chemistry | Protein Binding | Protein Subunits - chemistry | RNA, Viral - metabolism | Escherichia coli Proteins - chemistry | Binding Sites | Index Medicus | Structural Biology
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4. Full Text The Structure of Native Influenza Virion Ribonucleoproteins
by Rocío Arranz and Rocío Coloma and Francisco Javier Chichón and José Javier Conesa and José L. Carrascosa and José M. Valpuesta and Juan Ortín and Jaime Martín-Benito
Science, ISSN 0036-8075, 12/2012, Volume 338, Issue 6114, pp. 1634 - 1637
The influenza viruses cause annual epidemics of respiratory disease and occasional pandemics, which constitute a major public-health issue. The segmented... 
Pandemics | RNA | Particle interactions | Virions | REPORTS | Ribonucleoproteins | Orthomyxoviridae | Viruses | Viral morphology | Atomic structure | Monomers | LOCALIZATION | NUCLEAR | REPLICATION | PARTICLES | RECONSTRUCTION | MULTIDISCIPLINARY SCIENCES | COMPLEXES | POLYMERASE | A VIRUS NUCLEOPROTEIN | OLIGOMERIZATION | Viral Core Proteins - ultrastructure | RNA Replicase - metabolism | Influenza A Virus, H1N1 Subtype - physiology | Virion - chemistry | Viral Proteins - metabolism | Influenza A Virus, H1N1 Subtype - ultrastructure | RNA Replicase - ultrastructure | Cell Nucleus - metabolism | Cell Nucleus - virology | Madin Darby Canine Kidney Cells | Viral Core Proteins - metabolism | Transcription, Genetic | RNA, Viral - metabolism | Ribonucleoproteins - chemistry | Viral Core Proteins - chemistry | Protein Structure, Secondary | Electron Microscope Tomography | Viral Proteins - chemistry | RNA-Binding Proteins - chemistry | Models, Molecular | Ribonucleoproteins - metabolism | Viral Proteins - ultrastructure | Microscopy, Electron | Cryoelectron Microscopy | RNA-Binding Proteins - ultrastructure | Animals | RNA, Viral - chemistry | Image Processing, Computer-Assisted | RNA Replicase - chemistry | Virion - ultrastructure | Protein Conformation | Influenza A Virus, H1N1 Subtype - chemistry | Ribonucleoproteins - ultrastructure | RNA-Binding Proteins - metabolism | Influenza viruses | Properties | RNA-protein interactions | Influenza | Genomics | Virology | Index Medicus | Ribonucleic acids | Mortality | Replication | Genomes | Online | Assembly
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5. Full Text Ribozyme-Catalyzed Transcription of an Active Ribozyme
by Aniela Wochner and James Attwater and Alan Coulson and Philipp Holliger
Science, ISSN 0036-8075, 4/2011, Volume 332, Issue 6026, pp. 209 - 212
A critical event in the origin of life is thought to have been the emergence of an RNA molecule capable of replicating a primordial RNA "genome." Here we... 
Molecules | RNA | RESEARCH ARTICLES | Nucleotide sequences | Evolution | Libraries | Nucleotides | Polymers | Genetic mutation | Binding sites | SEQUENCES | LIGANDS | MULTIDISCIPLINARY SCIENCES | MOLECULAR EVOLUTION | POLYMERIZATION | EXTENSION | RNA-POLYMERASE RIBOZYME | SELECTION | Biocatalysis | RNA Replicase - genetics | RNA Replicase - metabolism | RNA, Catalytic - metabolism | Selection, Genetic | Templates, Genetic | Directed Molecular Evolution | RNA - chemistry | RNA - genetics | Genetic Engineering | RNA Replicase - chemistry | Base Sequence | Transcription, Genetic | Mutation | RNA, Catalytic - genetics | Nucleic Acid Conformation | RNA, Catalytic - chemistry | RNA - metabolism | Genetic transcription | Properties | Catalytic RNA | RNA polymerases | Methods | Index Medicus
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6. Full Text Crystal structure of an avian influenza polymerase PA(N) reveals an endonuclease active site
by Yuan, PW and Bartlam, M and Lou, ZY and Chen, SD and Zhou, J and He, XJ and Lv, ZY and Ge, RW and Li, XM and Deng, T and Fodor, E and Rao, ZH and Liu, YF
NATURE, ISSN 0028-0836, 04/2009, Volume 458, Issue 7240, pp. 909 - U12
The heterotrimeric influenza virus polymerase, containing the PA, PB1 and PB2 proteins, catalyses viral RNA replication and transcription in the nucleus of... 
A VIRUS | PA SUBUNIT | PROMOTER-BINDING | PB1 SUBUNIT | PROTEIN | REPLICATION | MULTIDISCIPLINARY SCIENCES | TERMINAL REGION | CAP-BINDING | PROTEOLYSIS | VIRUS-RNA-POLYMERASE | Influenza A Virus, H5N1 Subtype - enzymology | Catalytic Domain | Endonucleases - genetics | RNA Replicase - genetics | Viral Proteins - chemistry | RNA Replicase - metabolism | Birds - virology | Models, Molecular | Viral Proteins - genetics | Crystallography, X-Ray | Endonucleases - metabolism | Viral Proteins - metabolism | Protein Subunits - metabolism | Endonucleases - chemistry | Animals | RNA Replicase - chemistry | Influenza in Birds - virology | Protein Subunits - chemistry | Protein Subunits - genetics | Index Medicus
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7. Full Text An Overlapping Protein-Coding Region in Influenza A Virus Segment 3 Modulates the Host Response
by B. W. Jagger and H. M. Wise and J. C. Kash and K.-A. Walters and N. M. Wills and Y.-L. Xiao and R. L. Dunfee and L. M. Schwartzman and A. Ozinsky and G. L. Bell and R. M. Dalton and A. Lo and S. Efstathiou and J. F. Atkins and A. E. Firth and J. K. Taubenberger and P. Digard
Science, ISSN 0036-8075, 7/2012, Volume 337, Issue 6091, pp. 199 - 204
Influenza A virus (IAV) infection leads to variable and imperfectly understood pathogenicity. We report that segment 3 of the virus contains a second open... 
Proteins | Messenger RNA | RNA | Lungs | RESEARCH ARTICLES | Viruses | Infections | Open reading frames | Gene expression | Codons | Genetic mutation | SYSTEM | PA SUBUNIT | ENDONUCLEASE | MULTIDISCIPLINARY SCIENCES | SIGNALS | DEGRADATION | INFECTION | SUPPRESSION | BINDING | CELL-DEATH | Humans | Influenza A virus - genetics | RNA Replicase - metabolism | Reassortant Viruses - genetics | RNA, Messenger - metabolism | Viral Proteins - metabolism | Orthomyxoviridae Infections - genetics | Base Sequence | Repressor Proteins - metabolism | Amino Acid Sequence | RNA Replicase - genetics | Viral Proteins - chemistry | Orthomyxoviridae Infections - pathology | Repressor Proteins - genetics | Viral Proteins - genetics | Proteome | Influenza A virus - metabolism | Viral Nonstructural Proteins - metabolism | Mice | Mice, Inbred BALB C | Mutation | Orthomyxoviridae Infections - virology | Open Reading Frames | Molecular Sequence Data | Influenza A Virus, H1N1 Subtype - growth & development | Lung - virology | Viral Nonstructural Proteins - chemistry | Codon | Frameshifting, Ribosomal | RNA, Viral - genetics | HEK293 Cells | Conserved Sequence | Female | Protein Interaction Domains and Motifs | RNA, Viral - metabolism | Influenza A Virus, H1N1 Subtype - genetics | Viral Proteins - biosynthesis | Cell Line | Genome, Viral | Lung - pathology | Repressor Proteins - chemistry | RNA, Messenger - genetics | Gene Expression Regulation | Viral Nonstructural Proteins - genetics | Influenza A Virus, H1N1 Subtype - pathogenicity | Animals | Virus Replication | RNA Replicase - chemistry | Orthomyxoviridae Infections - immunology | Pathology | Genetic aspects | Research | Influenza | Influenza research | Pathogenesis | Virology | Index Medicus | Ribonucleic acids | Genes | Molecular interactions | Segments | Genomes | Constraining
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8. Full Text Proteomics Analysis of the Tombusvirus Replicase: Hsp70 Molecular Chaperone Is Associated with the Replicase and Enhances Viral RNA Replication
by Saulius Serva and Peter D. Nagy
Journal of Virology, ISSN 0022-538X, 03/2006, Volume 80, Issue 5, pp. 2162 - 2169
Article Usage Stats Services JVI Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley... 
BINDING DOMAINS | BUSHY-STUNT-VIRUS | GENOME REPLICATION | VIROLOGY | POLYMERASE COMPLEX | DEFECTIVE INTERFERING RNA | IN-VIVO | NUCLEAR RIBONUCLEOPROTEIN A1 | INFECTED-CELLS | CUCUMBER-NECROSIS-VIRUS | SACCHAROMYCES-CEREVISIAE | Surface Plasmon Resonance | Adenosine Triphosphatases - isolation & purification | Molecular Chaperones - metabolism | Saccharomyces cerevisiae - genetics | RNA Replicase - metabolism | Pyruvate Decarboxylase - isolation & purification | Electrophoresis, Gel, Two-Dimensional | Glyceraldehyde-3-Phosphate Dehydrogenase (Phosphorylating) - isolation & purification | Saccharomyces cerevisiae - metabolism | HSP70 Heat-Shock Proteins - analysis | Tombusvirus - physiology | Adenosine Triphosphatases - analysis | Mass Spectrometry | Saccharomyces cerevisiae Proteins - isolation & purification | Pyruvate Decarboxylase - analysis | Fungal Proteins - isolation & purification | Molecular Chaperones - analysis | RNA, Viral - biosynthesis | Adenosine Triphosphatases - metabolism | Tombusvirus - enzymology | HSP70 Heat-Shock Proteins - metabolism | Fungal Proteins - analysis | Glyceraldehyde-3-Phosphate Dehydrogenase (Phosphorylating) - metabolism | Chromatography, Affinity | RNA Replicase - chemistry | Proteomics | Saccharomyces cerevisiae Proteins - metabolism | Glyceraldehyde-3-Phosphate Dehydrogenase (Phosphorylating) - analysis | Protein Binding | HSP70 Heat-Shock Proteins - isolation & purification | Mutation | Molecular Chaperones - isolation & purification | Pyruvate Decarboxylase - metabolism | Saccharomyces cerevisiae Proteins - analysis | Fungal Proteins - metabolism | Index Medicus | Genome and Regulation of Viral Gene Expression
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9. Full Text Conformational Flexibility of the Dengue Virus RNA-Dependent RNA Polymerase Revealed by a Complex with an Inhibitor
by Christian G. Noble and Siew Pheng Lim and Yen-Liang Chen and Chong Wai Liew and Lijian Yap and Julien Lescar and Pei-Yong Shi
Journal of Virology, ISSN 0022-538X, 05/2013, Volume 87, Issue 9, pp. 5291 - 5295
Article Usage Stats Services JVI Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley... 
DOMAIN | VIROLOGY | CRYSTAL-STRUCTURE | RESOLUTION | Enzyme Inhibitors - metabolism | RNA Replicase - genetics | Viral Proteins - chemistry | RNA Replicase - metabolism | Crystallization | Dengue Virus - enzymology | Models, Molecular | Viral Proteins - genetics | RNA Replicase - antagonists & inhibitors | Viral Proteins - antagonists & inhibitors | Dengue Virus - chemistry | Viral Proteins - metabolism | Dengue Virus - genetics | RNA Replicase - chemistry | Enzyme Inhibitors - chemistry | Dimerization | Index Medicus | Structure and Assembly
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10. Full Text Identification, Characterization, and Natural Selection of Mutations Driving Airborne Transmission of A/H5N1 Virus
by Linster, Martin and van Boheemen, Sander and de Graaf, Miranda and Schrauwen, Eefje J.A and Lexmond, Pascal and Mänz, Benjamin and Bestebroer, Theo M and Baumann, Jan and van Riel, Debby and Rimmelzwaan, Guus F and Osterhaus, Albert D.M.E and Matrosovich, Mikhail and Fouchier, Ron A.M and Herfst, Sander
Cell, ISSN 0092-8674, 04/2014, Volume 157, Issue 2, pp. 329 - 339
Recently, A/H5N1 influenza viruses were shown to acquire airborne transmissibility between ferrets upon targeted mutagenesis and virus passage. The critical... 
A VIRUS | UPPER RESPIRATORY-TRACT | RECEPTOR-BINDING PROPERTIES | H5 HA | SPECIFICITY | BIOCHEMISTRY & MOLECULAR BIOLOGY | AVIAN INFLUENZA-VIRUS | FERRETS | HOST | HEMAGGLUTININ PROTEIN | DROPLET | CELL BIOLOGY | Genome, Viral | Influenza A Virus, H5N1 Subtype - physiology | RNA Replicase - genetics | Receptors, Virus - metabolism | Humans | RNA Replicase - metabolism | Selection, Genetic | Influenza A Virus, H5N1 Subtype - genetics | Influenza, Human - transmission | Ferrets | Hemagglutinin Glycoproteins, Influenza Virus - metabolism | Hemagglutinin Glycoproteins, Influenza Virus - genetics | Animals | RNA Replicase - chemistry | Influenza, Human - virology | Mutation | Amino Acid Substitution | Avian influenza | Avian influenza viruses | Genetic aspects | Genetic transcription | RNA | Health aspects | Organic acids | Index Medicus
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11. Full Text Localized reconstruction of subunits from electron cryomicroscopy images of macromolecular complexes
by Ilca, Serban L and Kotecha, Abhay and Sun, Xiaoyu and Poranen, Minna M and Stuart, David I and Huiskonen, Juha T
Nature Communications, ISSN 2041-1723, 11/2015, Volume 6, Issue 1, pp. 8843 - 8843
Electron cryomicroscopy can yield near-atomic resolution structures of highly ordered macromolecular complexes. Often however some subunits bind in a flexible... 
STRUCTURAL BIOLOGY | PROTEIN | MULTIDISCIPLINARY SCIENCES | RESOLUTION | POLYMERASE | EM STRUCTURE DETERMINATION | CRYO-EM | MODEL | RNA BACTERIOPHAGE PHI-6 | BINDING-SITES | CRYOELECTRON-MICROSCOPY | Protein Subunits | Macromolecular Substances - chemistry | Macromolecular Substances - ultrastructure | Rotavirus | Capsid Proteins - metabolism | RNA Replicase - chemistry | RNA Replicase - metabolism | Capsid Proteins - chemistry | Cryoelectron Microscopy - methods | Capsid Proteins - ultrastructure | Macromolecular Substances - metabolism | RNA Replicase - ultrastructure | Index Medicus
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12. Full Text Influenza Polymerase Can Adopt an Alternative Configuration Involving a Radical Repacking of PB2 Domains
by Thierry, Eric and Guilligay, Delphine and Kosinski, Jan and Bock, Thomas and Gaudon, Stephanie and Round, Adam and Pflug, Alexander and Hengrung, Narin and El Omari, Kamel and Baudin, Florence and Hart, Darren J and Beck, Martin and Cusack, Stephen
Molecular Cell, ISSN 1097-2765, 01/2016, Volume 61, Issue 1, pp. 125 - 137
Influenza virus polymerase transcribes or replicates the segmented RNA genome (vRNA) into respectively viral mRNA or full-length copies and initiates RNA... 
NUCLEAR IMPORT | COMPLEX | VIRUS | REPLICATION | ENDONUCLEASE | TERMINAL DOMAIN | BIOCHEMISTRY & MOLECULAR BIOLOGY | TRANSCRIPTION | MACHINERY | RNA-POLYMERASE | SUBUNIT | CELL BIOLOGY | Influenza A Virus, H5N1 Subtype - enzymology | Humans | RNA Replicase - metabolism | Molecular Sequence Data | Crystallography, X-Ray | Influenza A Virus, H5N1 Subtype - genetics | Structure-Activity Relationship | Viral Proteins - metabolism | Influenza B virus - genetics | Lasers | Mass Spectrometry | Protein Interaction Domains and Motifs | RNA, Viral - metabolism | Amino Acid Sequence | Influenza B virus - enzymology | RNA Replicase - genetics | Viral Proteins - chemistry | Models, Molecular | Nuclear Localization Signals - metabolism | Scattering, Small Angle | Viral Proteins - genetics | Ribonucleoproteins - metabolism | Influenzavirus C - enzymology | RNA Replicase - chemistry | Influenzavirus C - genetics | Synthesis | RNA | Influenza | Genomics | Nucleases | Messenger RNA | Resveratrol | Index Medicus | Biochemistry, Molecular Biology | Ribonucleoproteins | Influenza A Virus, H5N1 Subtype | Viral Proteins | Influenza B virus | Nuclear Localization Signals | Life Sciences | Influenzavirus C | RNA, Viral | Biomolecules | RNA Replicase
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13. Full Text Crystal Structure of the Bacteriophage Qβ Coat Protein in Complex with the RNA Operator of the Replicase Gene
by Rumnieks, Janis and Tars, Kaspars
Journal of Molecular Biology, ISSN 0022-2836, 03/2014, Volume 426, Issue 5, pp. 1039 - 1049
The coat proteins of single-stranded RNA bacteriophages specifically recognize and bind to a hairpin structure in their genome at the beginning of the... 
RNA recognition | Leviviridae | translational repression | protein–RNA interaction | allolevivirus | protein-RNA interaction | MS2 RNA | RECOGNITION | SPECIFICITY | TRANSLATIONAL OPERATOR | BIOCHEMISTRY & MOLECULAR BIOLOGY | PHAGE | REFINEMENT | MUTANTS | FRAGMENTS | BINDING-SITE | NUCLEOTIDE-SEQUENCE | Capsid Proteins - metabolism | RNA Replicase - genetics | RNA Replicase - metabolism | Models, Molecular | Crystallography, X-Ray | RNA, Viral - chemistry | RNA, Viral - genetics | RNA Replicase - chemistry | Capsid Proteins - chemistry | Protein Binding | Protein Conformation | RNA, Viral - metabolism | Nucleic Acid Conformation | Operator Regions, Genetic - genetics | Capsid Proteins - genetics | Index Medicus
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