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1. Full Text Microbiome analysis and bacterial isolation from Lejía Lake soil in Atacama Desert
by Mandakovic, Dinka and Maldonado, Jonathan and Pulgar, Rodrigo and Cabrera, Pablo and Gaete, Alexis and Urtuvia, Viviana and Seeger, Michael and Cambiazo, Verónica and González, Mauricio
Extremophiles, ISSN 1431-0651, 7/2018, Volume 22, Issue 4, pp. 665 - 673
As a consequence of the severe climatic change affecting our entire world, many lakes in the Andes Cordillera are likely to disappear within a few decades. One... 
Life Sciences | Biochemistry, general | Biotechnology | Microbial Ecology | Microbiology | Isolation and characterization | Soil extract medium (SEM) | Atacama Desert | Microbiome | COMMUNITY STRUCTURE | TEMPERATURE | BIOCHEMISTRY & MOLECULAR BIOLOGY | FUNGAL COMMUNITIES | SEQUENCE | MICROBIOLOGY | DIVERSITY | LIFE | Bacteria | RNA | Analysis | Genomics | Soil microbiology | Salt tolerance | rRNA 16S | Pipelines | Microbiomes | Tolerance | Environmental changes | Lake shores | Inland waters | Climate change | Soils | Microorganisms | Aquatic soils | Soil microorganisms | Relative abundance | Lakes | Culture media | Deserts | Soil bacteria | Index Medicus | Space life sciences
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2. Full Text Seasonality in bacterial diversity in north-west Mediterranean coastal waters: assessment through clone libraries, fingerprinting and FISH
by Alonso-Sáez, Laura and Balagué, Vanessa and Sà, Elisabet L and Sánchez, Olga and González, José M and Pinhassi, Jarone and Massana, Ramon and Pernthaler, Jakob and Pedrós-Alió, Carlos and Gasol, Josep M and Högskolan i Kalmar and Naturvetenskapliga institutionen
FEMS Microbiology Ecology, ISSN 0168-6496, 04/2007, Volume 60, Issue 1, pp. 98 - 112
Abstract We combined denaturing gradient gel electrophoresis (DGGE), catalysed reporter deposition-FISH (CARD-FISH) and clone libraries to investigate the... 
bacterial diversity | SAR11 | seasonality | marine | Roseobacter | Marine | Bacterial diversity | Seasonality | BACTERIOPLANKTON COMMUNITY STRUCTURE | IN-SITU HYBRIDIZATION | CATALYZED REPORTER DEPOSITION | MARINE BACTERIOPLANKTON | MICROBIOLOGY | GRADIENT GEL-ELECTROPHORESIS | GENETIC DIVERSITY | PELAGIC BACTERIA | FLOW-CYTOMETRY | TARGETED OLIGONUCLEOTIDE PROBES | 16S RIBOSOMAL-RNA | Molecular Sequence Data | Gammaproteobacteria - classification | Phylogeny | Gram-Negative Bacteria - isolation & purification | Genetic Variation | Cloning, Molecular | Polymerase Chain Reaction | DNA, Bacterial - analysis | Gammaproteobacteria - genetics | Gram-Negative Bacteria - genetics | Seasons | Mediterranean Sea | Alphaproteobacteria - isolation & purification | Bacteroidetes - isolation & purification | Seawater - microbiology | DNA, Bacterial - isolation & purification | Gene Library | In Situ Hybridization, Fluorescence | Bacteroidetes - classification | Sequence Analysis, DNA | DNA Fingerprinting - methods | Gammaproteobacteria - isolation & purification | Alphaproteobacteria - classification | Alphaproteobacteria - genetics | Polymorphism, Restriction Fragment Length | Gram-Negative Bacteria - growth & development | Bacteroidetes - genetics | Gram-Negative Bacteria - classification | Cloning | Libraries | Index Medicus | Mikrobiologi | Naturvetenskap | Natural Sciences | Microbiology
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3. Full Text Isolation of Bacterial RNA from Foods Inoculated with Pathogens
by Tyagi, Deepti and Kraft, Autumn L and Bergholz, Teresa M
Methods in Molecular Biology, ISSN 1064-3745, 2019, Volume 1918, pp. 129 - 137
One strategy bacteria use to acclimate to changing environmental conditions is modulation of gene expression. Alterations in gene expression are indicative of... 
RNA sequencing | Foodborne pathogens | RNA extraction | Transcriptional response | Foodborne Diseases - microbiology | Sequence Analysis, RNA | Food Contamination | Food Microbiology - methods | RNA, Bacterial - isolation & purification | High-Throughput Nucleotide Sequencing | Foodborne Diseases - diagnosis | Index Medicus
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4. Bacterial RNA isolation
by Ares, Manuel
Cold Spring Harbor Protocols, ISSN 1940-3402, 09/2012, Volume 7, Issue 9, pp. 1024 - 1027
In this bacterial RNA isolation protocol, an "RNA-protective" treatment is followed by lysozyme digestion of the peptidoglycan component of the cell wall. EDTA... 
Phenol - metabolism | Bacteriolysis | RNA, Bacterial - isolation & purification | Chloroform - metabolism | Muramidase - metabolism | Chemical Fractionation - methods | Bacteria - genetics | Molecular Biology - methods | Sodium Dodecyl Sulfate - metabolism
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5. Full Text Bacterial Community Variation in Human Body Habitats across Space and Time
by Elizabeth K. Costello and Christian L. Lauber and Micah Hamady and Noah Fierer and Jeffrey I. Gordon and Rob Knight
Science, ISSN 0036-8075, 12/2009, Volume 326, Issue 5960, pp. 1694 - 1697
Elucidating the biogeography of bacterial communities on the human body is critical for establishing healthy baselines from which to detect differences... 
Community structure | Hair | Microbiota | Forearm | Habitats | Communities | Mouth | Phylogenetics | Bacteria | Reports | Genetic diversity | DIVERSITY | MICROBIAL COMMUNITIES | FLORA | MULTIDISCIPLINARY SCIENCES | Skin - microbiology | DNA, Ribosomal - analysis | Hair - microbiology | Humans | Middle Aged | Male | Phylogeny | Biodiversity | Feces - microbiology | Time Factors | Bacteria - classification | Adult | DNA, Bacterial - analysis | Female | Principal Component Analysis | DNA, Ribosomal - genetics | DNA, Bacterial - isolation & purification | DNA, Ribosomal - isolation & purification | Ear Canal - microbiology | Bacteria - genetics | Bacteria - isolation & purification | DNA, Bacterial - genetics | Mouth - microbiology | RNA, Ribosomal, 16S - genetics | Genes, rRNA | Nose - microbiology | Metagenome | Cluster Analysis | Microbiota (Symbiotic organisms) | Biogeography | Research | Human body | Microbiology | Index Medicus
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6. Full Text Isolation of bacterial ribosomes with monolith chromatography
by Trauner, Andrej and Bennett, Mark H and Williams, Huw D
PLoS ONE, ISSN 1932-6203, 2011, Volume 6, Issue 2, pp. e16273 - e16273
We report the development of a rapid chromatographic method for the isolation of bacterial ribosomes from crude cell lysates in less than ten minutes. Our... 
RNA | MULTIDISCIPLINARY SCIENCES | ESCHERICHIA-COLI | PURIFICATION | SUPPORTS | ACTIVE RIBOSOMES | SUBUNITS | COLUMNS | SEPARATION | Sucrose - chemistry | Bacteria - metabolism | Bacteria - chemistry | Mycobacterium smegmatis - chemistry | Anion Exchange Resins - chemistry | Electrophoresis, Polyacrylamide Gel | Ribosomes - chemistry | Ribosomes - metabolism | Sucrose - pharmacology | Chromatography, High Pressure Liquid | Proteome - analysis | Proteome - chemistry | Mass Spectrometry | Chromatography, Ion Exchange - methods | Proteomics - methods | Chemical Fractionation - methods | Proteins | Antibiotics | Chromatography | Transfer RNA | Elution | Immunoglobulins | Sucrose | Genomics | Ribosomal DNA | Ribosomes | Ultracentrifugation | Anion exchange | Lysates | Anion exchanging | Proteomics | Bacteria | Life sciences | Genetic engineering | Deoxyribonucleic acid--DNA | Sugars | Index Medicus | Anions | Deoxyribonucleic acid | DNA
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7. Comparison of commercially-available RNA extraction methods for effective bacterial RNA isolation from milk spiked samples
by García-Nogales, Paula and Serrano, Alicia and Secchi, Sonia and Gutiérrez, Serafín and Arís, Anna
04/2011
Nucleic-acid based methods for bacterial identification are extremely useful in diagnostic applications due to their specificity and sensitivity. However, they... 
RNA | bacteria | purification | milk
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8. Full Text Isolation of Bacterial Strains Capable of Sulfamethoxazole Mineralization from an Acclimated Membrane Bioreactor
by Helene Bouju and Benjamin Ricken and Trello Beffa and Philippe F.-X. Corvini and Boris A. Kolvenbach
Applied and Environmental Microbiology, ISSN 0099-2240, 01/2012, Volume 78, Issue 1, pp. 277 - 279
Classifications Services AEM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit... 
MICROBIOLOGY | PHARMACEUTICALS | FATE | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | WASTE-WATER | Biodegradation, Environmental | Proteobacteria - metabolism | Molecular Sequence Data | Proteobacteria - genetics | Proteobacteria - isolation & purification | Base Sequence | Bioreactors - microbiology | Biotransformation | Actinobacteria - genetics | Actinobacteria - metabolism | RNA, Ribosomal, 16S - genetics | DNA, Bacterial - analysis | Actinobacteria - isolation & purification | Sulfamethoxazole - metabolism | Proteobacteria | Sulfamethoxazole | Usage | Microbial enzymes | Physiological aspects | Microbiological synthesis | Actinomycetes | Chemical properties | Research | Microbiology | Membrane reactors | Bacteria | Index Medicus | Biodegradation
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9. Full Text Composition of the Vaginal Microbiota in Women of Reproductive Age - Sensitive and Specific Molecular Diagnosis of Bacterial Vaginosis Is Possible?
by Shipitsyna, Elena and Roos, Annika and Datcu, Raluca and Hallén, Anders and Fredlund, Hans and Jensen, Jørgen S and Engstrand, Lars and Unemo, Magnus and Region Örebro län
PLoS ONE, ISSN 1932-6203, 04/2013, Volume 8, Issue 4, pp. e60670 - e60670
Background and Objective: Bacterial vaginosis (BV) is the most common vaginal disorder, characterized by depletion of the normal lactobacillus-dominant... 
PELVIC-INFLAMMATORY-DISEASE | REAL-TIME PCR | MYCOPLASMA-HOMINIS | GARDNERELLA-VAGINALIS | ATOPOBIUM-VAGINAE | INDEPENDENT ANALYSIS | GRAM-STAIN | MULTIDISCIPLINARY SCIENCES | QUANTITATIVE PCR | JAPANESE WOMEN | METRONIDAZOLE THERAPY | Lactobacillus - genetics | DNA, Bacterial - isolation & purification | Vaginosis, Bacterial - diagnosis | Humans | Middle Aged | Case-Control Studies | Metagenome - genetics | DNA, Bacterial - genetics | Gardnerella vaginalis - genetics | Gardnerella vaginalis - isolation & purification | Vaginosis, Bacterial - microbiology | Actinobacteria - genetics | Adolescent | Megasphaera - isolation & purification | RNA, Ribosomal, 16S - genetics | RNA, Ribosomal, 16S - isolation & purification | Adult | Female | Actinobacteria - isolation & purification | High-Throughput Nucleotide Sequencing | Vagina - microbiology | Megasphaera - genetics | Real-Time Polymerase Chain Reaction | Lactobacillus - isolation & purification | Women | Microbiota (Symbiotic organisms) | RNA | Analysis | Bacteria | Diagnosis | Health aspects | Vaginosis | rRNA 16S | Microbiology | Laboratories | Infections | Criteria | Medical diagnosis | Microbiota | Microorganisms | Quality | Age | Anaerobic bacteria | Thresholds | Vagina | Abundance | Gonorrhea | Multiculturalism & pluralism | Depletion | Microscopy | Surveillance | Womens health | Flora | Relative abundance | Sampling methods | Diagnostic systems | Clinical medicine | Index Medicus | Basic Medicine | Medical and Health Sciences | Microbiology in the medical area | Mikrobiologi inom det medicinska området | Medicin och hälsovetenskap | Medicinska och farmaceutiska grundvetenskaper
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10. Full Text Cellulose utilization in forest litter and soil: identification of bacterial and fungal decomposers
by Štursová, Martina and Žifčáková, Lucia and Leigh, Mary Beth and Burgess, Robert and Baldrian, Petr
FEMS Microbiology Ecology, ISSN 0168-6496, 06/2012, Volume 80, Issue 3, pp. 735 - 746
Abstract Organic matter decomposition in the globally widespread coniferous forests has an important role in the carbon cycle, and cellulose decomposition is... 
decomposition | litter | cellobiohydrolase | microbial ecology | cellulose | forest soil | Microbial ecology | Decomposition | Forest soil | Litter | Cellobiohydrolase | Cellulose | PHYLOGENETIC ANALYSIS | MICROBIOLOGY | SP NOV | COMMUNITIES | RIBOSOMAL-RNA | REVEAL | RESPONSES | SPHAGNUM | GENES | DIVERSITY | ENZYME-PRODUCTION | Bacteria - metabolism | DNA, Bacterial - isolation & purification | Picea - microbiology | Soil Microbiology | Fungi - isolation & purification | Biomass | DNA, Fungal - isolation & purification | Carbon Isotopes - analysis | Fungi - metabolism | Bacteria - genetics | Fungi - genetics | Sequence Analysis, DNA | Bacteria - isolation & purification | Polymorphism, Restriction Fragment Length | Soil | Trees - microbiology | Genes, Fungal | Cellulose - metabolism | Fungi | Bacteria | Index Medicus
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11. Full Text Abundance and Diversity of Bacterial, Archaeal, and Fungal Communities Along an Altitudinal Gradient in Alpine Forest Soils: What Are the Driving Factors?
by Siles, José A and Margesin, Rosa
Microbial Ecology, ISSN 0095-3628, 7/2016, Volume 72, Issue 1, pp. 207 - 220
Shifts in soil microbial communities over altitudinal gradients and the driving factors are poorly studied. Their elucidation is indispensable to gain a... 
Microbiology | Archaea | Water Quality/Water Pollution | Ecology | Life Sciences | Fungi | Microbial Ecology | Climate change | Nature Conservation | Geoecology/Natural Processes | Soil metagenomics | Elevational gradient | Bacteria | CHINA | DECOMPOSITION | CLIMATE-CHANGE | PATTERNS | MICROBIOLOGY | MICROBIAL COMMUNITY | ELEVATION GRADIENT | ARABLE SOIL | PH GRADIENT | LITTER | MARINE & FRESHWATER BIOLOGY | ECOLOGY | PCR | DNA, Archaeal - genetics | Temperature | DNA, Bacterial - isolation & purification | DNA, Fungal - genetics | Fungi - classification | Soil Microbiology | Fungi - isolation & purification | Archaea - isolation & purification | DNA, Fungal - isolation & purification | Biodiversity | Archaea - classification | Sequence Analysis, DNA | Bacteria - isolation & purification | DNA, Bacterial - genetics | DNA, Archaeal - isolation & purification | Chemical Phenomena | Soil - chemistry | Bacteria - classification | RNA, Ribosomal, 16S - genetics | RNA, Ribosomal, 16S - isolation & purification | Italy | Altitude | Greenhouse effect | Global temperature changes | Ecosystems | Soil acidity | Soil microbiology | Forest soils | Index Medicus
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12. Full Text Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns
by Maria G. Dominguez-Bello and Elizabeth K. Costello and Monica Contreras and Magda Magris and Glida Hidalgo and Noah Fierer and Rob Knight and Jeffrey I. Gordon
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 6/2010, Volume 107, Issue 26, pp. 11971 - 11975
Upon delivery, the neonate is exposed for the first time to a wide array of microbes from a variety of sources, including maternal bacteria. Although prior... 
Taxa | Microbiota | Microorganisms | Habitats | rRNA genes | Vagina | Bacteria | Infants | Cesarean section | Lactobacillus | Human microbiome | Pioneer community | Host-microbe interactions | Neonatal bacterial assemblages | PROTEIN | pioneer community | SEQUENCES | INTESTINAL MICROBIOTA | MULTIDISCIPLINARY SCIENCES | host-microbe interactions | neonatal bacterial assemblages | CESAREAN DELIVERY | COLONIZATION | MECHANISMS | GUT MICROBIOTA | EVOLUTION | human microbiome | BACTERIAL COMMUNITIES | DIVERSITY | Skin - microbiology | Humans | Male | DNA Primers - genetics | Young Adult | Delivery, Obstetric - methods | Metagenome - genetics | Base Sequence | Ecosystem | Bacteria - classification | RNA, Bacterial - genetics | RNA, Ribosomal, 16S - isolation & purification | Adult | Female | Nasopharynx - microbiology | Infant, Newborn | Mouth Mucosa - microbiology | Bacteria - genetics | Pregnancy | Cesarean Section | Venezuela | Bacteria - isolation & purification | RNA, Bacterial - isolation & purification | RNA, Ribosomal, 16S - genetics | Vagina - microbiology | Host-bacteria relationships | Neonatology | Bacterial growth | Bacteriology, Medical | Research | Observations | Neonatal care | Maternal & child health | Newborn babies | Ribonucleic acid--RNA | Gene expression | Bacteriology | Index Medicus | Biological Sciences | host–microbe interactions
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