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1. Full Text psRNATarget: a plant small RNA target analysis server
by Dai, Xinbin and Zhao, Patrick Xuechun
Nucleic Acids Research, ISSN 0305-1048, 7/2011, Volume 39, Issue suppl_2, pp. W155 - W159
Plant endogenous non-coding short small RNAs (20-24 nt), including microRNAs (miRNAs) and a subset of small interfering RNAs (ta-siRNAs), play important role... 
RECOGNITION | COMPUTATIONAL IDENTIFICATION | MIRNA | TRIGGER | BIOCHEMISTRY & MOLECULAR BIOLOGY | ACCESSIBILITY | GENES | SIRNA BIOGENESIS | MICRORNAS | PREDICTION | MicroRNAs - metabolism | RNA, Messenger - metabolism | RNA, Plant - metabolism | RNA, Small Interfering - chemistry | Sequence Analysis, RNA | RNA, Plant - chemistry | Gene Expression Regulation, Plant | RNA, Small Untranslated - chemistry | RNA, Messenger - chemistry | Software | MicroRNAs - chemistry | RNA, Small Untranslated - metabolism | RNA, Small Interfering - metabolism | Post-transcription | Transcription factors | Translation | Transcription | non-coding RNA | Data processing | siRNA | Gene expression | Secondary structure | Algorithms | Energy | miRNA | Internet | Protein structure
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2. Full Text Deep sequencing of RNA from immune cell-derived vesicles uncovers the selective incorporation of small non-coding RNA biotypes with potential regulatory functions
by Nolte-'t Hoen, E.N.M.|info:eu-repo/dai/nl/261632175 and Buermans, H.P and Waasdorp, M and Stoorvogel, W.|info:eu-repo/dai/nl/074352385 and Wauben, M.H.M.|info:eu-repo/dai/nl/112675735 and t Hoen, P.A.C
Nucleic Acids Research, ISSN 0305-1048, 2012, Volume 40, Issue 18, pp. 9272 - 9285
Cells release RNA-carrying vesicles and membrane-free RNA/protein complexes into the extracellular milieu. Horizontal vesicle-mediated transfer of such shuttle... 
PROTEIN | PARTICLE | MEMBRANE-VESICLES | BIOCHEMISTRY & MOLECULAR BIOLOGY | TRANSCRIPTION | COMPLEXES | EXOSOMES | MICROVESICLES | MICRORNAS | IDENTIFICATION | LYMPHOCYTES | Coculture Techniques | Dendritic Cells - immunology | Cells, Cultured | RNA, Small Untranslated - physiology | RNA, Transfer - analysis | Sequence Analysis, RNA | MicroRNAs - analysis | RNA, Small Untranslated - analysis | T-Lymphocytes - chemistry | RNA, Small Untranslated - chemistry | Repetitive Sequences, Nucleic Acid | T-Lymphocytes - immunology | Transport Vesicles - chemistry | High-Throughput Nucleotide Sequencing | RNA, Transfer - chemistry | MicroRNAs - chemistry | Dendritic Cells - chemistry | Biotypes | Vesicles | non-coding RNA | tRNA | Data processing | Evolution | miRNA | RNA
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3. Full Text Bacterial small RNA regulators: Versatile roles and rapidly evolving variations
by Gottesman, Susan and Storz, Gisela
Cold Spring Harbor Perspectives in Biology, ISSN 1943-0264, 12/2011, Volume 3, Issue 12, pp. a003798 - a003798
Small RNA regulators (sRNAs) have been identified in a wide range of bacteria and found to play critical regulatory roles in many processes. The major families... 
STAPHYLOCOCCUS-AUREUS RNAIII | OUTER-MEMBRANE PROTEINS | MESSENGER-RNA | 6S RNA | ENCODED ANTISENSE RNAS | ESCHERICHIA-COLI | GENE-EXPRESSION | SOLUBLE-RNA | BINDING PROTEIN | SMALL NONCODING RNAS | CELL BIOLOGY | Base Pairing | RNA, Bacterial - chemistry | RNA, Bacterial - physiology | RNA, Small Untranslated - chemistry | RNA, Bacterial - genetics | RNA, Small Untranslated - genetics | RNA, Small Untranslated - physiology | Bacteria - genetics | Evolution, Molecular | Concept | 052
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4. Full Text Computational analysis of bacterial RNA-Seq data
by McClure, Ryan and Balasubramanian, Divya and Sun, Yan and Bobrovskyy, Maksym and Sumby, Paul and Genco, Caroline A and Vanderpool, Carin K and Tjaden, Brian
Nucleic Acids Research, ISSN 0305-1048, 08/2013, Volume 41, Issue 14, pp. e140 - e140
Recent advances in high-throughput RNA sequencing (RNA-seq) have enabled tremendous leaps forward in our understanding of bacterial transcriptomes. However,... 
READ ALIGNMENT | TRANSCRIPTOMES | DIFFERENTIAL EXPRESSION | PATHOGEN | SEQUENCES | BIOCHEMISTRY & MOLECULAR BIOLOGY | OPERON PREDICTION | COMPLEXITY | ULTRAFAST | GENE-EXPRESSION | DISCOVERY | Genome, Bacterial | Operon | Gene Expression Profiling | Sequence Alignment | Algorithms | Sequence Analysis, RNA | 5' Untranslated Regions | RNA, Bacterial - chemistry | RNA, Small Untranslated - chemistry | Transcription, Genetic | High-Throughput Nucleotide Sequencing | Software | Genomics - methods | RNA, Bacterial - metabolism | RNA, Small Untranslated - metabolism | Methods Online
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5. Full Text CRISPR-Cas Systems in Bacteria and Archaea: Versatile Small RNAs for Adaptive Defense and Regulation
by Bhaya, Devaki and Davison, Michelle and Barrangou, Rodolphe
Annual Review of Genetics, ISSN 0066-4197, 12/2011, Volume 45, Issue 1, pp. 273 - 297
Bacteria and archaea have evolved defense and regulatory mechanisms to cope with various environmental stressors, including virus attack. This arsenal has been... 
RNAi | immunity | interference | bacteriophage | coevolution | Bacteriophage | Coevolution | Immunity | Interference | MYCOBACTERIUM-TUBERCULOSIS | ESCHERICHIA-COLI | PROVIDES ACQUIRED-RESISTANCE | REPEATS CRISPRS | IMMUNE-SYSTEM | GENOME SEQUENCE | ANTIVIRAL DEFENSE | STRUCTURAL BASIS | YERSINIA-PESTIS | GENETICS & HEREDITY | HORIZONTAL GENE-TRANSFER | RNA, Archaeal - immunology | Bacteria - chemistry | RNA, Archaeal - chemistry | Bacterial Proteins - chemistry | Archaea - chemistry | Virus Diseases - virology | Genetic Loci | Archaea - virology | Bacteria - immunology | RNA Interference | RNA, Small Untranslated - chemistry | Bacteriophages - genetics | RNA, Bacterial - genetics | RNA, Small Untranslated - genetics | Transcription, Genetic | Archaea - immunology | Bacterial Proteins - immunology | RNA, Archaeal - genetics | Virus Diseases - genetics | Bacteria - virology | Adaptive Immunity | Virus Diseases - immunology | RNA Processing, Post-Transcriptional | Plasmids - immunology | RNA, Small Untranslated - immunology | Bacterial Proteins - genetics | Computational Biology | Gene Expression Regulation, Archaeal | Endodeoxyribonucleases - chemistry | Bacteria - genetics | Bacteriophages - immunology | Endodeoxyribonucleases - genetics | Escherichia coli Proteins | RNA, Bacterial - chemistry | RNA, Bacterial - immunology | Archaea - genetics | CRISPR-Associated Proteins | Gene Expression Regulation, Bacterial | Evolution, Molecular | RNA | Physiological aspects | Bacteria | Genetic aspects | Research | Genetic regulation | Archaeabacteria
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6. Full Text Exosomes in human semen carry a distinctive repertoire of small non-coding RNAs with potential regulatory functions
by Vojtech, Lucia and Woo, Sangsoon and Hughes, Sean and Levy, Claire and Ballweber, Lamar and Sauteraud, Renan P and Strobl, Johanna and Westerberg, Katharine and Gottardo, Raphael and Tewari, Muneesh and Hladik, Florian
Nucleic Acids Research, ISSN 0305-1048, 2014, Volume 42, Issue 11, pp. 7290 - 7304
Semen contains relatively ill-defined regulatory components that likely aid fertilization, but which could also interfere with defense against infection. Each... 
CIRCULATING MICRORNAS | HUMAN SEMINAL PLASMA | DENDRITIC CELLS | BIOCHEMISTRY & MOLECULAR BIOLOGY | EXTRACELLULAR ORGANELLES PROSTASOMES | LUPUS-ERYTHEMATOSUS | MURINE LEUKEMIA-VIRUS | MEDIATED TRANSFER | CHROMOSOMAL DNA-REPLICATION | T-CELLS | PIWI-INTERACTING RNAS | RNA, Transfer - analysis | MicroRNAs - analysis | RNA, Small Untranslated - analysis | Humans | Semen - chemistry | RNA, Small Untranslated - chemistry | RNA, Messenger - analysis | Male | Exosomes - chemistry | Exosomes - ultrastructure | RNA
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7. Full Text Regulation by Small RNAs in Bacteria: Expanding Frontiers
by Storz, Gisela and Vogel, Jörg and Wassarman, Karen M
Molecular Cell, ISSN 1097-2765, 09/2011, Volume 43, Issue 6, pp. 880 - 891
Research on the discovery and characterization of small, regulatory RNAs in bacteria has exploded in recent years. These sRNAs act by base pairing with target... 
LISTERIA-MONOCYTOGENES | STAPHYLOCOCCUS-AUREUS REVEALS | 6S RNA | ANTISENSE RNAS | CATABOLITE REPRESSION | BIOCHEMISTRY & MOLECULAR BIOLOGY | ESCHERICHIA-COLI | GENE-EXPRESSION | TARGET MESSENGER-RNAS | SOLUBLE-RNA | TRANSLATIONAL INITIATION | CELL BIOLOGY | RNA-Binding Proteins - genetics | Base Pairing | RNA-Binding Proteins - physiology | RNA, Bacterial - chemistry | Gene Expression Regulation | RNA, Bacterial - physiology | RNA, Small Untranslated - chemistry | RNA, Small Untranslated - physiology | Models, Genetic | RNA, Messenger - metabolism | Bacteria - genetics | Proteins | Physiological aspects | RNA | University and college libraries | Protein binding
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