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1. Full Text Structure of the SARS-CoV‑2 Nsp1/5′-Untranslated Region Complex and Implications for Potential Therapeutic Targets, a Vaccine, and Virulence
by Vankadari, Naveen and Jeyasankar, Nandhini Nisha and Lopes, Wilma Jerom
The journal of physical chemistry letters, ISSN 1948-7185, 11/2020, Volume 11, Issue 22, pp. 9659 - 9668
Physical Insights into Chemistry, Catalysis, and Interfaces | Physical Sciences | Chemistry | Materials Science | Nanoscience & Nanotechnology | Technology | Materials Science, Multidisciplinary | Science & Technology - Other Topics | Physics, Atomic, Molecular & Chemical | Chemistry, Physical | Physics | Science & Technology | SARS-CoV-2 - chemistry | Ribosome Subunits, Small, Eukaryotic - chemistry | Depsides - metabolism | Virulence | Glycyrrhizic Acid - chemistry | Glycyrrhizic Acid - metabolism | Depsides - chemistry | Pregnatrienes - chemistry | Lactones - metabolism | Pregnatrienes - metabolism | Molecular Dynamics Simulation | Salicylates - chemistry | Viral Nonstructural Proteins - chemistry | RNA, Viral - chemistry | SARS-CoV-2 - pathogenicity | 5' Untranslated Regions | COVID-19 Vaccines | Protein Binding - drug effects | Viral Nonstructural Proteins - metabolism | RNA, Viral - metabolism | Salicylates - metabolism | Ribosome Subunits, Small, Eukaryotic - metabolism | Lactones - chemistry | Index Medicus | Letter
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2. Full Text West Nile virus encodes a microRNA-like small RNA in the 3' untranslated region which up-regulates GATA4 mRNA and facilitates virus replication in mosquito cells
by Hussain, M and Torres, S and Schnettler, E and Funk, A and Grundhoff, A and Pijlman, G.P and Khromykh, A.A and Asgari, S
Nucleic acids research, ISSN 0305-1048, 2012, Volume 40, Issue 5, pp. 2210 - 2223
drosophila-melanogaster | viral micrornas | flavivirus rna | antiviral immunity | kunjin virus | aedes-aegypti | vitellogenin gene | gene-expression | infected-cells | double-stranded-rna | Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | GATA4 Transcription Factor - biosynthesis | RNA Precursors - chemistry | Genome, Viral | Up-Regulation | West Nile virus - physiology | MicroRNAs - antagonists & inhibitors | GATA4 Transcription Factor - genetics | MicroRNAs - metabolism | Ribonuclease III - antagonists & inhibitors | West Nile virus - metabolism | RNA, Messenger - biosynthesis | Aedes - virology | Animals | RNA, Viral - chemistry | West Nile virus - genetics | RNA Interference | Virus Replication | Cloning, Molecular | Aedes - cytology | 3' Untranslated Regions | MicroRNAs - chemistry | Index Medicus | RNA
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3. Full Text A SNP in a let-7 microRNA complementary site in the KRAS 3′ untranslated region increases non-small cell lung cancer risk
by Chin, Lena J and Ratner, Elena and Leng, Shuguang and Zhai, Rihong and Nallur, Sunitha and Babar, Imran and Muller, Roman-Ulrich and Straka, Eva and Su, Li and Burki, Elizabeth A and Crowell, Richard E and Patel, Rajeshvari and Kulkarni, Trupti and Homer, Robert and Zelterman, Daniel and Kidd, Kenneth K and Zhu, Yong and Christiani, David C and Belinsky, Steven A and Slack, Frank J and Weidhaas, Joanne B
Cancer research (Chicago, Ill.), ISSN 0008-5472, 10/2008, Volume 68, Issue 20, pp. 8535 - 8540
Life Sciences & Biomedicine | Oncology | Science & Technology | Lung Neoplasms - genetics | Smoking - adverse effects | ras Proteins - genetics | Genetic Predisposition to Disease | Proto-Oncogene Proteins p21(ras) | Carcinoma, Non-Small-Cell Lung - genetics | Humans | Carcinoma, Non-Small-Cell Lung - etiology | Male | Proto-Oncogene Proteins - genetics | Risk | 3' Untranslated Regions - chemistry | Case-Control Studies | Lung Neoplasms - etiology | Alleles | Female | MicroRNAs - genetics | Polymorphism, Single Nucleotide | Index Medicus
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4. Full Text Modified ribosome profiling reveals high abundance of ribosome protected mRNA fragments derived from 3′ untranslated regions
by Miettinen, Teemu P and Björklund, Mikael
Nucleic acids research, ISSN 0305-1048, 01/2015, Volume 43, Issue 2, pp. 1019 - 1034
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Ribosomal Proteins - analysis | Cell Line | Protein Biosynthesis | Ribosome Subunits, Small, Eukaryotic - chemistry | Drosophila | Humans | Ribosomes - metabolism | RNA, Messenger - metabolism | Animals | Ribonuclease, Pancreatic | RNA, Messenger - chemistry | Micrococcal Nuclease | 3' Untranslated Regions | Index Medicus | Genomics
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5. Full Text In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways
by Chao, Yanjie and Li, Lei and Girodat, Dylan and Förstner, Konrad U and Said, Nelly and Corcoran, Colin and Śmiga, Michał and Papenfort, Kai and Reinhardt, Richard and Wieden, Hans-Joachim and Luisi, Ben F and Vogel, Jörg
Molecular cell, ISSN 1097-2765, 01/2017, Volume 65, Issue 1, pp. 39 - 51
Hfq | non-coding RNA | sRNA maturation | 3′ UTR | uridine ruler | TIER-seq | RNA degradome | ArcZ | RNase E | RprA | Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Science & Technology | Cell Biology | RNA Precursors - chemistry | Endoribonucleases - chemistry | Endoribonucleases - genetics | Bacterial Proteins - chemistry | Transcriptome | Databases, Genetic | Salmonella enterica - genetics | Structure-Activity Relationship | RNA, Messenger - metabolism | Host Factor 1 Protein - metabolism | RNA, Small Untranslated - chemistry | Salmonella enterica - enzymology | RNA, Bacterial - genetics | RNA, Small Untranslated - genetics | RNA Precursors - metabolism | Catalysis | 3' Untranslated Regions | Nucleic Acid Conformation | Host Factor 1 Protein - genetics | RNA, Bacterial - metabolism | RNA, Small Untranslated - metabolism | Endoribonucleases - metabolism | RNA, Messenger - genetics | Bacterial Proteins - genetics | Computational Biology | RNA Precursors - genetics | Molecular Dynamics Simulation | RNA, Bacterial - chemistry | Bacterial Proteins - metabolism | RNA, Messenger - chemistry | Uridine - metabolism | Gene Expression Regulation, Bacterial | Nucleases | Messenger RNA | Nucleotides | Ribonuclease | Research institutes | Index Medicus
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6. Full Text Migration of Small Ribosomal Subunits on the 5 ' Untranslated Regions of Capped Messenger RNA
by Shirokikh, Nikolay E and Dutikova, Yulia S and Staroverova, Maria A and Hannan, Ross D and Preiss, Thomas
International journal of molecular sciences, ISSN 1422-0067, 09/2019, Volume 20, Issue 18, p. 4464
Biochemistry & Molecular Biology | Physical Sciences | Chemistry | Life Sciences & Biomedicine | Chemistry, Multidisciplinary | Science & Technology | RNA Helicases - metabolism | Protein Biosynthesis | RNA, Messenger - genetics | Ribosomes - metabolism | 5' Untranslated Regions - genetics | Eukaryotic Initiation Factor-4F - metabolism | Ribosome Subunits, Small - metabolism | Ribosome Subunits, Small - genetics | Animals | Cell-Free System | Ribosomes - genetics | Adenosine Triphosphate - metabolism | Adenylyl Imidodiphosphate - metabolism | Cell Line, Tumor | Mice | Models, Genetic | RNA Caps - genetics | Translation | Scanning | AMP | Mechanical properties | mRNA | Genomes | RNA polymerase | Mammals | Gene expression | Electron microscopy | DNA-directed RNA polymerase | Gene sequencing | Proteins | Ribosomal subunits | 5' Untranslated Regions | Queues | Magnesium | Codons | Index Medicus | eukaryotes | 5′ UTR | mRNA translation | ribosomal scanning | 40S ribosomal subunit | SSU | eIF4F | translation initiation | 5′UTR | cap-dependent initiation | eIF4A | gene expression control
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7. Full Text Expression of distinct RNAs from 3′ untranslated regions
by Mercer, Tim R and Wilhelm, Dagmar and Dinger, Marcel E and Soldà, Giulia and Korbie, Darren J and Glazov, Evgeny A and Truong, Vy and Schwenke, Maren and Simons, Cas and Matthaei, Klaus I and Saint, Robert and Koopman, Peter and Mattick, John S
Nucleic acids research, ISSN 0305-1048, 03/2011, Volume 39, Issue 6, pp. 2393 - 2403
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Drosophila melanogaster - metabolism | Animals | RNA Processing, Post-Transcriptional | RNA, Untranslated - metabolism | Exons | Humans | Embryonic Development - genetics | Gene Expression Profiling | Mice | 3' Untranslated Regions | Drosophila melanogaster - genetics | Index Medicus | RNA
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8. Full Text deepBase v2.0: Identification, expression, evolution and function of small RNAs, LncRNAs and circular RNAs from deep-sequencing data
by Zheng, Ling-Ling and Li, Jun-Hao and Wu, Jie and Sun, Wen-Ju and Liu, Shun and Wang, Ze-Lin and Zhou, Hui and Yang, Jian-Hua and Qu, Liang-Hu
Nucleic acids research, ISSN 0305-1048, 2016, Volume 44, Issue 1, pp. D196 - D202
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | RNA - physiology | RNA, Long Noncoding - chemistry | Humans | Molecular Sequence Annotation | RNA, Small Untranslated - physiology | RNA, Long Noncoding - genetics | RNA, Long Noncoding - physiology | RNA - chemistry | RNA - genetics | Animals | Sequence Analysis, RNA | RNA, Small Untranslated - chemistry | RNA, Small Untranslated - genetics | High-Throughput Nucleotide Sequencing | Mice | Software | Databases, Nucleic Acid | RNA, Long Noncoding - metabolism | RNA, Small Untranslated - metabolism | Evolution, Molecular | RNA - metabolism | Index Medicus | Database Issue
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