Trends in Ecology & Evolution, ISSN 0169-5347, 01/2014, Volume 29, Issue 1, pp. 33 - 41
Does evolution proceed faster in larger or smaller populations? The relationship between effective population size ( ) and the rate of evolution has...
mutation rate | natural selection | molecular evolution | substitution rate | genetic drift | population size | Genetic drift | Molecular evolution | Population size | Mutation rate | Substitution rate | Natural selection | MITOCHONDRIAL GENETIC DIVERSITY | MUTATION-RATE | PROTEIN-CODING GENES | BENEFICIAL MUTATIONS | EVOLUTIONARY BIOLOGY | SELECTION COEFFICIENTS | NATURAL-SELECTION | GENETICS & HEREDITY | RECOMBINATION RATES | ECOLOGY | SUBSTITUTION RATES | NEUTRAL THEORY | Biological Evolution | Models, Genetic | Population Density | Evolution, Molecular | Genetic research
mutation rate | natural selection | molecular evolution | substitution rate | genetic drift | population size | Genetic drift | Molecular evolution | Population size | Mutation rate | Substitution rate | Natural selection | MITOCHONDRIAL GENETIC DIVERSITY | MUTATION-RATE | PROTEIN-CODING GENES | BENEFICIAL MUTATIONS | EVOLUTIONARY BIOLOGY | SELECTION COEFFICIENTS | NATURAL-SELECTION | GENETICS & HEREDITY | RECOMBINATION RATES | ECOLOGY | SUBSTITUTION RATES | NEUTRAL THEORY | Biological Evolution | Models, Genetic | Population Density | Evolution, Molecular | Genetic research
Journal Article
Molecular Biology and Evolution, ISSN 0737-4038, 2017, Volume 34, Issue 3, pp. 772 - 773
PartitionFinder 2 is a program for automatically selecting best-fit partitioning schemes and models of evolution for phylogenetic analyses. PartitionFinder 2...
Molecular evolution | AIC | Partitioning | Model selection | BIC | AICc | PHYLOGENOMICS | EVOLUTIONARY BIOLOGY | BIOCHEMISTRY & MOLECULAR BIOLOGY | GENETICS & HEREDITY | model selection | partitioning | SITE RATES | molecular evolution | SCHEMES | Biological Evolution | Algorithms | Computer Simulation | Models, Genetic | Software | Phylogeny | Genome | Sequence Analysis, DNA - methods | Evolution, Molecular
Molecular evolution | AIC | Partitioning | Model selection | BIC | AICc | PHYLOGENOMICS | EVOLUTIONARY BIOLOGY | BIOCHEMISTRY & MOLECULAR BIOLOGY | GENETICS & HEREDITY | model selection | partitioning | SITE RATES | molecular evolution | SCHEMES | Biological Evolution | Algorithms | Computer Simulation | Models, Genetic | Software | Phylogeny | Genome | Sequence Analysis, DNA - methods | Evolution, Molecular
Journal Article
Astrophysical Journal Letters, ISSN 2041-8205, 01/2013, Volume 762, Issue 2, pp. L31 - 6
Using reconstructed galaxy star formation histories, we calculate the instantaneous efficiency of galaxy star formation (i.e., the star formation rate divided...
galaxies: abundances | galaxies: evolution | dark matter | FORMATION RATES | HALO MASS | LUMINOSITY FUNCTION | DARK MATTER CONNECTION | GAS ACCRETION | HIGH-REDSHIFT | ASTRONOMY & ASTROPHYSICS | CONSTRAINTS | ANALYTIC MODEL | MILKY-WAY | STELLAR MASS | Halos | Star formation | Galaxy formation | Mathematical analysis | Milky Way Galaxy | Computational efficiency | Computing time | Star formation rate | Physics - Cosmology and Nongalactic Astrophysics | SHAPE | NONLUMINOUS MATTER | ASTROPHYSICS, COSMOLOGY AND ASTRONOMY | SCALING | MASS | STARS | GALACTIC EVOLUTION | MILKY WAY | BARYONS | SHOCK HEATING
galaxies: abundances | galaxies: evolution | dark matter | FORMATION RATES | HALO MASS | LUMINOSITY FUNCTION | DARK MATTER CONNECTION | GAS ACCRETION | HIGH-REDSHIFT | ASTRONOMY & ASTROPHYSICS | CONSTRAINTS | ANALYTIC MODEL | MILKY-WAY | STELLAR MASS | Halos | Star formation | Galaxy formation | Mathematical analysis | Milky Way Galaxy | Computational efficiency | Computing time | Star formation rate | Physics - Cosmology and Nongalactic Astrophysics | SHAPE | NONLUMINOUS MATTER | ASTROPHYSICS, COSMOLOGY AND ASTRONOMY | SCALING | MASS | STARS | GALACTIC EVOLUTION | MILKY WAY | BARYONS | SHOCK HEATING
Journal Article
Nature Reviews Genetics, ISSN 1471-0056, 08/2005, Volume 6, Issue 8, pp. 654 - 662
During the past four decades, the molecular-clock hypothesis has provided an invaluable tool for building evolutionary timescales, and has served as a null...
CRETACEOUS-TERTIARY BOUNDARY | DARWINIAN EVOLUTION | METAZOAN PHYLA | NUCLEOTIDE SUBSTITUTION | GENETICS & HEREDITY | RELATIVE RATES | DETERMINING DIVERGENCE TIMES | DNA-SEQUENCE EVOLUTION | MITOCHONDRIAL-DNA | FOSSIL RECORD | AMINO-ACID SEQUENCE | Proteins - genetics | Animals | Humans | Evolution, Molecular
CRETACEOUS-TERTIARY BOUNDARY | DARWINIAN EVOLUTION | METAZOAN PHYLA | NUCLEOTIDE SUBSTITUTION | GENETICS & HEREDITY | RELATIVE RATES | DETERMINING DIVERGENCE TIMES | DNA-SEQUENCE EVOLUTION | MITOCHONDRIAL-DNA | FOSSIL RECORD | AMINO-ACID SEQUENCE | Proteins - genetics | Animals | Humans | Evolution, Molecular
Journal Article
Materials & Design, ISSN 0264-1275, 05/2016, Volume 97, pp. 13 - 24
Hot compression tests of a nickel-based superalloy with δ phase (Ni Nb) are performed. The evolution of dynamic recrystallization (DRX) grains and δ phase, as...
Hot deformation | Nickel-based superalloy | δ Phase | Dynamic recrystallization | EBSD | MICROSTRUCTURAL EVOLUTION | INCONEL 718 | PROCESSING MAP | NI-BASED SUPERALLOY | GH4169 SUPERALLOY | BEHAVIOR | MATERIALS SCIENCE, MULTIDISCIPLINARY | ALLOY 617B | IN718 SUPERALLOY | FRACTURE CHARACTERISTICS | delta Phase | ELEVATED-TEMPERATURE | Grain boundaries | Nickel base alloys | Nucleation | Deformation | Grains | Dissolution | True strain | Strain rate
Hot deformation | Nickel-based superalloy | δ Phase | Dynamic recrystallization | EBSD | MICROSTRUCTURAL EVOLUTION | INCONEL 718 | PROCESSING MAP | NI-BASED SUPERALLOY | GH4169 SUPERALLOY | BEHAVIOR | MATERIALS SCIENCE, MULTIDISCIPLINARY | ALLOY 617B | IN718 SUPERALLOY | FRACTURE CHARACTERISTICS | delta Phase | ELEVATED-TEMPERATURE | Grain boundaries | Nickel base alloys | Nucleation | Deformation | Grains | Dissolution | True strain | Strain rate
Journal Article
Methods in Molecular Biology, ISSN 1064-3745, 2017, Volume 1525, pp. 379 - 420
Most phylogenetic methods are model-based and depend on models of evolution designed to approximate the evolutionary processes. Several methods have been...
Phylogenetic assumptions | Rate-heterogeneity across sites | Evolutionary processes | Model selection | Model evaluation | Homogeneous conditions | Stationary conditions | Markov models | Reversible conditions | Markov Chains | Models, Genetic | Algorithms | Phylogeny | Evolution, Molecular
Phylogenetic assumptions | Rate-heterogeneity across sites | Evolutionary processes | Model selection | Model evaluation | Homogeneous conditions | Stationary conditions | Markov models | Reversible conditions | Markov Chains | Models, Genetic | Algorithms | Phylogeny | Evolution, Molecular
Journal Article
Annual Review of Genetics, ISSN 0066-4197, 12/2000, Volume 34, Issue 1, pp. 401 - 437
Changes in ploidy occurred early in the diversification of some animal and plant lineages and represent an ongoing phenomenon in others. While the prevalence...
triploid | animals | tetraploid | plants | gene duplication | rate of evolution | Triploid | Rate of evolution | Gene duplication | Animals | Plants | Tetraploid | DRABA BRASSICACEAE | PARTHENOGENETIC ARTEMIA | DUPLICATE GENES | VERTEBRATE GENOME EVOLUTION | NATURAL-SELECTION | GENETICS & HEREDITY | SEX DETERMINATION | DAPHNIA-PULEX | FLOWERING PLANTS | RUTILUS ALBURNOIDES | YEAST GENOME | Biological Evolution | Gene Duplication | Polyploidy | Plants - genetics | Evolution | Genetic aspects | Research | Genetic regulation | Flowers & plants | Genes
triploid | animals | tetraploid | plants | gene duplication | rate of evolution | Triploid | Rate of evolution | Gene duplication | Animals | Plants | Tetraploid | DRABA BRASSICACEAE | PARTHENOGENETIC ARTEMIA | DUPLICATE GENES | VERTEBRATE GENOME EVOLUTION | NATURAL-SELECTION | GENETICS & HEREDITY | SEX DETERMINATION | DAPHNIA-PULEX | FLOWERING PLANTS | RUTILUS ALBURNOIDES | YEAST GENOME | Biological Evolution | Gene Duplication | Polyploidy | Plants - genetics | Evolution | Genetic aspects | Research | Genetic regulation | Flowers & plants | Genes
Journal Article
Methods in Ecology and Evolution, ISSN 2041-210X, 10/2012, Volume 3, Issue 5, pp. 803 - 807
Summary 1. paleotree is a library of functions for the R statistical computing environment dedicated to analyses that combine paleontological and phylogenetic...
macroevolution | comparative methods | diversification | paleobiology | birth‐death models | Macroevolution | Birth-death models | Diversification | Comparative methods | Paleobiology | PRESERVATION | RATES | PROBABILITY | ECOLOGY | TRILOBITES | FOSSIL RECORD | birth-death models
macroevolution | comparative methods | diversification | paleobiology | birth‐death models | Macroevolution | Birth-death models | Diversification | Comparative methods | Paleobiology | PRESERVATION | RATES | PROBABILITY | ECOLOGY | TRILOBITES | FOSSIL RECORD | birth-death models
Journal Article
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 1/2013, Volume 110, Issue 2, pp. 571 - 576
To gauge the relative importance of contingency and determinism in evolution is a fundamental problem that continues to motivate much theoretical and empirical...
Determinism | Predictability | Ecological competition | Evolution | Population size | Evolutionary genetics | Entropy | Trajectories | Genetic mutation | Genotypes | asexual evolution | rugged fitness landscapes | epistasis | selection | trajectories | escherichia-coli | adaptation | beneficial mutations | model | dna-sequences | Clonal interference | Epistasis | Experimental evolution | DNA-SEQUENCES | experimental evolution | BENEFICIAL MUTATIONS | MULTIDISCIPLINARY SCIENCES | ESCHERICHIA-COLI | TRAJECTORIES | MODEL | ASEXUAL EVOLUTION | ADAPTATION | RUGGED FITNESS LANDSCAPES | SELECTION | clonal interference | Biological Evolution | Models, Theoretical | Genetic Fitness | Aspergillus niger - genetics | Adaptation, Biological - genetics | Computer Simulation | Population Density | Mutation Rate | Aspergillus | Microbial genetics | Physiological aspects | Genetic aspects | Research | Population genetics | Biological Sciences
Determinism | Predictability | Ecological competition | Evolution | Population size | Evolutionary genetics | Entropy | Trajectories | Genetic mutation | Genotypes | asexual evolution | rugged fitness landscapes | epistasis | selection | trajectories | escherichia-coli | adaptation | beneficial mutations | model | dna-sequences | Clonal interference | Epistasis | Experimental evolution | DNA-SEQUENCES | experimental evolution | BENEFICIAL MUTATIONS | MULTIDISCIPLINARY SCIENCES | ESCHERICHIA-COLI | TRAJECTORIES | MODEL | ASEXUAL EVOLUTION | ADAPTATION | RUGGED FITNESS LANDSCAPES | SELECTION | clonal interference | Biological Evolution | Models, Theoretical | Genetic Fitness | Aspergillus niger - genetics | Adaptation, Biological - genetics | Computer Simulation | Population Density | Mutation Rate | Aspergillus | Microbial genetics | Physiological aspects | Genetic aspects | Research | Population genetics | Biological Sciences
Journal Article
Proceedings of the Royal Society B: Biological Sciences, ISSN 0962-8452, 07/2013, Volume 280, Issue 1762, pp. 20130211 - 20130211
Ecological factors exert a range of effects on the dynamics of the evolutionary process. A particularly marked effect comes from population structure, which...
Population structure | Fixation probability | Rate of evolution | EVOLUTIONARY BIOLOGY | population structure | fixation probability | GAMES | BIOLOGY | DYNAMICS | ECOLOGY | COOPERATION | rate of evolution | FIXATION | GRAPHS | STRATEGIES | Biological Evolution | Genetics, Population | Time Factors | Population Density | Selection, Genetic | Probability | Mutation Rate | Models, Genetic | 203 | 1001
Population structure | Fixation probability | Rate of evolution | EVOLUTIONARY BIOLOGY | population structure | fixation probability | GAMES | BIOLOGY | DYNAMICS | ECOLOGY | COOPERATION | rate of evolution | FIXATION | GRAPHS | STRATEGIES | Biological Evolution | Genetics, Population | Time Factors | Population Density | Selection, Genetic | Probability | Mutation Rate | Models, Genetic | 203 | 1001
Journal Article
Nature, ISSN 0028-0836, 06/2001, Volume 411, Issue 6841, pp. 1040 - 1049
If protein evolution is due in large part to slightly deleterious amino acid substitutions(1,2), then the rate of evolution should be greater in proteins that...
YEAST | MULTIDISCIPLINARY SCIENCES | SITES | CONSTRAINTS | TIME | SUBSTITUTION RATE | GENES EVOLVE | GENOME | REGION | Proteins - physiology | Genes, Helminth | Helminth Proteins - genetics | Time | Fungal Proteins - genetics | Proteins - genetics | Caenorhabditis elegans | Fungal Proteins - physiology | Animals
YEAST | MULTIDISCIPLINARY SCIENCES | SITES | CONSTRAINTS | TIME | SUBSTITUTION RATE | GENES EVOLVE | GENOME | REGION | Proteins - physiology | Genes, Helminth | Helminth Proteins - genetics | Time | Fungal Proteins - genetics | Proteins - genetics | Caenorhabditis elegans | Fungal Proteins - physiology | Animals