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Journal Article
Molecular Biology and Evolution, ISSN 0737-4038, 2017, Volume 34, Issue 3, pp. 772 - 773
PartitionFinder 2 is a program for automatically selecting best-fit partitioning schemes and models of evolution for phylogenetic analyses. PartitionFinder 2... 
Molecular evolution | AIC | Partitioning | Model selection | BIC | AICc | PHYLOGENOMICS | EVOLUTIONARY BIOLOGY | BIOCHEMISTRY & MOLECULAR BIOLOGY | GENETICS & HEREDITY | model selection | partitioning | SITE RATES | molecular evolution | SCHEMES | Biological Evolution | Algorithms | Computer Simulation | Models, Genetic | Software | Phylogeny | Genome | Sequence Analysis, DNA - methods | Evolution, Molecular
Journal Article
Journal Article
Nature Reviews Genetics, ISSN 1471-0056, 08/2005, Volume 6, Issue 8, pp. 654 - 662
During the past four decades, the molecular-clock hypothesis has provided an invaluable tool for building evolutionary timescales, and has served as a null... 
CRETACEOUS-TERTIARY BOUNDARY | DARWINIAN EVOLUTION | METAZOAN PHYLA | NUCLEOTIDE SUBSTITUTION | GENETICS & HEREDITY | RELATIVE RATES | DETERMINING DIVERGENCE TIMES | DNA-SEQUENCE EVOLUTION | MITOCHONDRIAL-DNA | FOSSIL RECORD | AMINO-ACID SEQUENCE | Proteins - genetics | Animals | Humans | Evolution, Molecular
Journal Article
Methods in Molecular Biology, ISSN 1064-3745, 2017, Volume 1525, pp. 379 - 420
Most phylogenetic methods are model-based and depend on models of evolution designed to approximate the evolutionary processes. Several methods have been... 
Phylogenetic assumptions | Rate-heterogeneity across sites | Evolutionary processes | Model selection | Model evaluation | Homogeneous conditions | Stationary conditions | Markov models | Reversible conditions | Markov Chains | Models, Genetic | Algorithms | Phylogeny | Evolution, Molecular
Journal Article
Annual Review of Genetics, ISSN 0066-4197, 12/2000, Volume 34, Issue 1, pp. 401 - 437
Journal Article
Methods in Ecology and Evolution, ISSN 2041-210X, 10/2012, Volume 3, Issue 5, pp. 803 - 807
Summary 1. paleotree is a library of functions for the R statistical computing environment dedicated to analyses that combine paleontological and phylogenetic... 
macroevolution | comparative methods | diversification | paleobiology | birth‐death models | Macroevolution | Birth-death models | Diversification | Comparative methods | Paleobiology | PRESERVATION | RATES | PROBABILITY | ECOLOGY | TRILOBITES | FOSSIL RECORD | birth-death models
Journal Article
Proceedings of the Royal Society B: Biological Sciences, ISSN 0962-8452, 07/2013, Volume 280, Issue 1762, pp. 20130211 - 20130211
Ecological factors exert a range of effects on the dynamics of the evolutionary process. A particularly marked effect comes from population structure, which... 
Population structure | Fixation probability | Rate of evolution | EVOLUTIONARY BIOLOGY | population structure | fixation probability | GAMES | BIOLOGY | DYNAMICS | ECOLOGY | COOPERATION | rate of evolution | FIXATION | GRAPHS | STRATEGIES | Biological Evolution | Genetics, Population | Time Factors | Population Density | Selection, Genetic | Probability | Mutation Rate | Models, Genetic | 203 | 1001
Journal Article
Nature, ISSN 0028-0836, 06/2001, Volume 411, Issue 6841, pp. 1040 - 1049
If protein evolution is due in large part to slightly deleterious amino acid substitutions(1,2), then the rate of evolution should be greater in proteins that... 
YEAST | MULTIDISCIPLINARY SCIENCES | SITES | CONSTRAINTS | TIME | SUBSTITUTION RATE | GENES EVOLVE | GENOME | REGION | Proteins - physiology | Genes, Helminth | Helminth Proteins - genetics | Time | Fungal Proteins - genetics | Proteins - genetics | Caenorhabditis elegans | Fungal Proteins - physiology | Animals