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1. Full Text Synthesis of activated pyrimidine ribonucleotides in prebiotically plausible conditions
by Gerland, Béatrice and Sutherland, John D and Powner, Matthew W
Nature (London), ISSN 0028-0836, 05/2009, Volume 459, Issue 7244, pp. 239 - 242
Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Genetics of eukaryotes. Biological and molecular evolution | Biological evolution | Acetaldehyde - chemistry | Arabinose - chemistry | Phosphorylation | Ribonucleotides - chemistry | Models, Chemical | Pyrimidines - chemical synthesis | Cyanamide - chemistry | Glyceraldehyde - chemistry | Phosphates - chemistry | Origin of Life | Oxazoles - chemistry | Pyrimidines - chemistry | Arabinose - analogs & derivatives | Oxazoles - chemical synthesis | Acetylene - chemistry | Ribonucleotides - chemical synthesis | Ribose | Nitriles - chemistry | Acetylene - analogs & derivatives | Catalysis | Buffers | Acetaldehyde - analogs & derivatives | Hydrogen-Ion Concentration | Ribonucleotides | Pyrimidines | Heterocyclic compounds | Protein biosynthesis | Biochemistry | Research | Properties | Aqueous solutions | Chemical synthesis | Chemistry | Index Medicus
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2. Full Text RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme
by Miao, Zhichao and Adamiak, Ryszard W and Antczak, Maciej and Batey, Robert T and Becka, Alexander J and Biesiada, Marcin and Boniecki, Michał J and Bujnicki, Janusz M and Chen, Shi-Jie and Cheng, Clarence Yu and Chou, Fang-Chieh and Ferré-D'Amaré, Adrian R and Das, Rhiju and Dawson, Wayne K and Ding, Feng and Dokholyan, Nikolay V and Dunin-Horkawicz, Stanisław and Geniesse, Caleb and Kappel, Kalli and Kladwang, Wipapat and Krokhotin, Andrey and Łach, Grzegorz E and Major, François and Mann, Thomas H and Magnus, Marcin and Pachulska-Wieczorek, Katarzyna and Patel, Dinshaw J and Piccirilli, Joseph A and Popenda, Mariusz and Purzycka, Katarzyna J and Ren, Aiming and Rice, Greggory M and Santalucia, John and Sarzynska, Joanna and Szachniuk, Marta and Tandon, Arpit and Trausch, Jeremiah J and Tian, Siqi and Wang, Jian and Weeks, Kevin M and Williams, Benfeard and Xiao, Yi and Xu, Xiaojun and Zhang, Dong and Zok, Tomasz and Westhof, Eric
RNA (Cambridge), ISSN 1355-8382, 05/2017, Volume 23, Issue 5, pp. 655 - 672
3D prediction | Models | Structure quality | Force fields | Bioinformatics | X-ray structures | Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Endoribonucleases - chemistry | Ribonucleotides - metabolism | Riboswitch | Ribonucleotides - chemistry | Endoribonucleases - metabolism | RNA, Catalytic - metabolism | Aptamers, Nucleotide - chemistry | Glutamine - metabolism | Models, Molecular | S-Adenosylmethionine - chemistry | Aptamers, Nucleotide - metabolism | Dinucleoside Phosphates - metabolism | Aminoimidazole Carboxamide - chemistry | Ligands | Glutamine - chemistry | Aminoimidazole Carboxamide - metabolism | Nucleic Acid Conformation | RNA, Catalytic - chemistry | S-Adenosylmethionine - metabolism | Index Medicus | Life Sciences | Molecular biology | Biochemistry, Molecular Biology | models | structure quality | force fields | bioinformatics
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3. Full Text An Active Dimanganese(III)−Tyrosyl Radical Cofactor in Escherichia coli Class Ib Ribonucleotide Reductase
by Cotruvo, Joseph A and Stubbe, JoAnne
Biochemistry (Easton), ISSN 0006-2960, 02/2010, Volume 49, Issue 6, pp. 1297 - 1309
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Catalytic Domain | Oxidants - chemistry | Coenzymes - biosynthesis | Oxidation-Reduction | Ribonucleotide Reductases - chemistry | Free Radicals - chemistry | Metalloproteins - biosynthesis | Peroxides - chemistry | Metalloproteins - classification | Escherichia coli Proteins - classification | Protein Subunits - classification | Ribonucleotide Reductases - classification | Multiprotein Complexes - chemistry | Metalloproteins - chemistry | Multiprotein Complexes - classification | Coenzymes - classification | Escherichia coli Proteins - biosynthesis | Oxygen - chemistry | Ribonucleotide Reductases - biosynthesis | Protein Subunits - chemistry | Coenzymes - chemistry | Escherichia coli Proteins - chemistry | Manganese Compounds - chemistry | Tyrosine - chemistry | Ribonucleotides | Escherichia coli | Analysis | Organometallic compounds | Physiological aspects | Oxidation-reduction reaction | Genetic aspects | Chemical properties | Structure | Manganese | Index Medicus
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4. Full Text The Origin of Life—Out of the Blue
by Sutherland, John D
Angewandte Chemie (International ed.), ISSN 1433-7851, 01/2016, Volume 55, Issue 1, pp. 104 - 121
prebiotic chemistry | systems chemistry | hydrogen cyanide | ribonucleotides | amino acids | Physical Sciences | Chemistry | Chemistry, Multidisciplinary | Science & Technology | Autotrophic Processes | Lipids - chemistry | Ribonucleotides - chemistry | Lipids - chemical synthesis | Hydrogen Cyanide - chemistry | Ribonucleotides - chemical synthesis | Amino Acids - chemistry | Heterotrophic Processes | Amino Acids - chemical synthesis | Origin of Life | Hydrogen | Nitriles | Cyanide | Hydrogen cyanide | Heterotrophy | Raw materials | Cyanides | Autotrophy | Chemical synthesis | Index Medicus
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5. Full Text Divergent prebiotic synthesis of pyrimidine and 8-oxo-purine ribonucleotides
by Stairs, Shaun and Nikmal, Arif and Bǔar, Dejan-Krešimir and Zheng, Shao-Liang and Szostak, Jack W and Powner, Matthew W
Nature communications, ISSN 2041-1723, 05/2017, Volume 8, Issue 1, pp. 15270 - 15270
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Phosphorylation | Sugars - chemistry | Purines - chemistry | Ribonucleotides - chemistry | Pentoses - chemistry | Furans - chemistry | Stereoisomerism | Thiones - chemistry | Purine Nucleotides - chemistry | Oxazoles - chemistry | Pyrimidines - chemistry | Prebiotics | Index Medicus
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6. Full Text Structural Basis for Superoxide Activation of Flavobacterium johnsoniae Class I Ribonucleotide Reductase and for Radical Initiation by Its Dimanganese Cofactor
by Rose, Hannah R and Ghosh, Manas K and Maggiolo, Ailiena O and Pollock, Christopher J and Blaesi, Elizabeth J and Hajj, Viviane and Wei, Yifeng and Rajakovich, Lauren J and Chang, Wei-chen and Han, Yilin and Hajj, Mariana and Krebs, Carsten and Silakov, Alexey and Pandelia, Maria-Eirini and Bollinger, J. Martin and Boal, Amie K and Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Advanced Light Source (ALS) and Argonne National Lab. (ANL), Argonne, IL (United States). Advanced Photon Source (APS) and SLAC National Accelerator Lab., Menlo Park, CA (United States). Stanford Synchrotron Radiation Lightsource (SSRL)
Biochemistry (Easton), ISSN 0006-2960, 05/2018, Volume 57, Issue 18, pp. 2679 - 2693
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Flavoproteins - chemistry | Catalytic Domain | Flavoproteins - metabolism | Oxidation-Reduction | Ribonucleotide Reductases - chemistry | Iron - chemistry | Superoxides - chemistry | Manganese - chemistry | Ribonucleotide Reductases - classification | Flavobacterium - enzymology | Flavobacterium - chemistry | Oxygen - chemistry | Ribonucleotide Reductases - metabolism | Catalysis | Tyrosine - chemistry | Index Medicus | Transition metals | INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY | BASIC BIOLOGICAL SCIENCES | Electron paramagnetic resonance spectroscopy | Peptides and proteins | Cluster chemistry | Monomers
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7. Full Text Biochemistry and Theory of Proton-Coupled Electron Transfer
by Migliore, Agostino and Polizzi, Nicholas F and Therien, Michael J and Beratan, David N
Chemical reviews, ISSN 0009-2665, 04/2014, Volume 114, Issue 7, pp. 3381 - 3465
Physical Sciences | Chemistry | Chemistry, Multidisciplinary | Science & Technology | Protons | Deoxyribodipyrimidine Photo-Lyase - chemistry | Electron Transport | Ribonucleotide Reductases - chemistry | Amino Acids - chemistry | Models, Molecular | Deoxyribodipyrimidine Photo-Lyase - metabolism | Photosystem II Protein Complex - metabolism | Amino Acids - metabolism | Quantum Theory | Photosystem II Protein Complex - chemistry | Ribonucleotide Reductases - metabolism | Kinetics | Electrons | Electron transport | Biochemistry | Research | Electron transfer | Electron transfer reactions | Index Medicus | Review
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