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1. Full Text Structures of the Bacterial Ribosome in Classical and Hybrid States of tRNA Binding
by Jack A. Dunkle and Leyi Wang and Michael B. Feldman and Arto Pulk and Vincent B. Chen and Gary J. Kapral and Jonas Noeske and Jane S. Richardson and Scott C. Blanchard and Jamie H. Doudna Cate
Science (American Association for the Advancement of Science), ISSN 0036-8075, 5/2011, Volume 332, Issue 6032, pp. 981 - 984
Messenger RNA | RNA | REPORTS | Ribosomes | Amino acids | Nucleotides | Recycling | Rotation | Hybridity | Transfer RNA | Crystal structure | Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Structure in molecular biology | Molecular biophysics | Crystalline structure | Anticodon - metabolism | Protein Biosynthesis | RNA, Transfer, Phe - chemistry | Ribosome Subunits, Large, Bacterial - metabolism | Escherichia coli | RNA, Transfer, Amino Acyl - chemistry | Anticodon - chemistry | Crystallography, X-Ray | RNA, Messenger - metabolism | Ribosomal Proteins - metabolism | RNA, Transfer, Amino Acyl - metabolism | Nucleic Acid Conformation | RNA, Bacterial - metabolism | RNA, Ribosomal, 16S - metabolism | RNA, Transfer, Phe - metabolism | Ribosome Subunits, Small, Bacterial - metabolism | Ribosome Subunits, Large, Bacterial - ultrastructure | Models, Molecular | Escherichia coli Proteins - metabolism | RNA, Ribosomal, 23S - chemistry | Ribosome Subunits, Small, Bacterial - ultrastructure | RNA, Ribosomal, 16S - chemistry | Ribosome Subunits, Large, Bacterial - chemistry | RNA, Bacterial - chemistry | RNA, Messenger - chemistry | Ribosome Subunits, Small, Bacterial - chemistry | RNA, Ribosomal, 23S - metabolism | Physiological aspects | Protein biosynthesis | Properties | E coli | Microbiology | Ribonucleic acid--RNA | Protein synthesis | Binding sites | Index Medicus
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2. Full Text Allosteric control of the ribosome by small-molecule antibiotics
by Wang, Leyi and Pulk, Arto and Wasserman, Michael R and Feldman, Michael B and Altman, Roger B and Doudna Cate, Jamie H and Blanchard, Scott C
Nature structural & molecular biology, ISSN 1545-9993, 09/2012, Volume 19, Issue 9, pp. 957 - 963
Biochemistry & Molecular Biology | Biophysics | Life Sciences & Biomedicine | Science & Technology | Cell Biology | Ribosome Subunits, Small, Bacterial - metabolism | Ribosome Subunits, Large, Bacterial - metabolism | Escherichia coli - drug effects | RNA, Ribosomal - chemistry | Models, Molecular | RNA, Ribosomal - metabolism | Crystallography, X-Ray | Escherichia coli Proteins - metabolism | Ribosome Subunits, Small, Bacterial - drug effects | Escherichia coli - chemistry | Ribosome Subunits, Large, Bacterial - drug effects | Neomycin - chemistry | Ribosome Subunits, Large, Bacterial - chemistry | Anti-Bacterial Agents - chemistry | RNA, Bacterial - chemistry | Escherichia coli - metabolism | Neomycin - pharmacology | RNA, Transfer, Amino Acyl - metabolism | Protein Biosynthesis - drug effects | Anti-Bacterial Agents - pharmacology | Ribosome Subunits, Small, Bacterial - chemistry | RNA, Bacterial - metabolism | Antibiotics | Ribosomal RNA | Physiological aspects | Protein biosynthesis | Genetic aspects | Research | Health aspects | Transfer RNA | Molecular biology | Protein synthesis | Crystallography | Index Medicus
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3. Full Text The pathway to GTPase activation of elongation factor SelB on the ribosome
by Fischer, Niels and Neumann, Piotr and Bock, Lars V and Maracci, Cristina and Wang, Zhe and Paleskava, Alena and Konevega, Andrey L and Schröder, Gunnar F and Grubmüller, Helmut and Ficner, Ralf and Rodnina, Marina V and Stark, Holger
Nature (London), ISSN 0028-0836, 12/2016, Volume 540, Issue 7631, pp. 80 - 85
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Selenocysteine - metabolism | Protein Biosynthesis | Ribosome Subunits, Large, Bacterial - metabolism | Codon, Terminator - genetics | Bacterial Proteins - chemistry | RNA, Transfer, Amino Acid-Specific - metabolism | Ribosomes - metabolism | GTP Phosphohydrolases - ultrastructure | Ribosomes - enzymology | Escherichia coli - metabolism | Protein Domains | Nucleic Acid Conformation | Binding Sites | Codon, Terminator - chemistry | Ribosome Subunits, Small, Bacterial - metabolism | Endoribonucleases - metabolism | Ribosome Subunits, Large, Bacterial - ultrastructure | Ribosomes - chemistry | Models, Molecular | RNA, Transfer, Amino Acid-Specific - genetics | Escherichia coli - chemistry | Codon, Terminator - metabolism | Cryoelectron Microscopy | RNA, Transfer, Amino Acid-Specific - chemistry | Ribosome Subunits, Small, Bacterial - ultrastructure | Ribosomes - ultrastructure | GTP Phosphohydrolases - metabolism | Ricin - metabolism | Escherichia coli - genetics | Ribosome Subunits, Large, Bacterial - chemistry | Protein Binding | Bacterial Proteins - metabolism | Bacterial Proteins - ultrastructure | Enzyme Activation | RNA, Transfer, Amino Acid-Specific - ultrastructure | Ribosome Subunits, Small, Bacterial - chemistry | Escherichia coli - ultrastructure | Fungal Proteins - metabolism | Physiological aspects | Protein research | Protein biosynthesis | Research | Guanosine triphosphatase | Ribosomes | Enzymes | E coli | Ribonucleic acid--RNA | Crystal structure | Index Medicus
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4. Full Text Structures of the Ribosome in Intermediate States of Ratcheting
by Wen Zhang and Jack A. Dunkle and Jamie H. D. Cate
Science (American Association for the Advancement of Science), ISSN 0036-8075, 8/2009, Volume 325, Issue 5943, pp. 1014 - 1017
Proteins | Head | Messenger RNA | Ribosomes | Reports | Rotational states | Nucleotides | Rotation | Binding sites | Transfer RNA | Crystal structure | Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Structure in molecular biology | Molecular biophysics | Crystalline structure | Ribosomal Proteins - chemistry | Anticodon - metabolism | Protein Biosynthesis | RNA, Transfer, Phe - chemistry | Ribosome Subunits, Large, Bacterial - metabolism | Anticodon - chemistry | Ribosomes - metabolism | Crystallography, X-Ray | RNA, Messenger - metabolism | Ribosomal Proteins - metabolism | Escherichia coli Proteins - biosynthesis | Escherichia coli - metabolism | Nucleic Acid Conformation | RNA, Bacterial - metabolism | RNA, Transfer, Phe - metabolism | Ribosome Subunits, Small, Bacterial - metabolism | RNA, Transfer, Met - metabolism | Ribosome Subunits, Large, Bacterial - ultrastructure | Ribosomes - chemistry | Escherichia coli Proteins - metabolism | Escherichia coli - chemistry | Ribosome Subunits, Small, Bacterial - ultrastructure | Ribosomes - ultrastructure | RNA, Transfer, Met - chemistry | Ribosome Subunits, Large, Bacterial - chemistry | RNA, Bacterial - chemistry | Protein Conformation | RNA, Messenger - chemistry | Ribosome Subunits, Small, Bacterial - chemistry | Escherichia coli Proteins - chemistry | Escherichia coli - ultrastructure | Escherichia coli | Physiological aspects | Protein biosynthesis | Genetic aspects | Research | Structure | E coli | Molecular biology | Protein synthesis | Anticodons | Index Medicus
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5. Full Text Structure of Ribosomal Silencing Factor Bound to Mycobacterium tuberculosis Ribosome
by Li, Xiaojun and Sun, Qingan and Jiang, Cai and Yang, Kailu and Hung, Li-Wei and Zhang, Junjie and Sacchettini, James C
Structure (London), ISSN 0969-2126, 10/2015, Volume 23, Issue 10, pp. 1858 - 1865
Biochemistry & Molecular Biology | Biophysics | Life Sciences & Biomedicine | Science & Technology | Cell Biology | Ribosomal Proteins - chemistry | Protein Biosynthesis | Transcription Factors - chemistry | Mycobacterium smegmatis - metabolism | Ribosome Subunits, Large, Bacterial - metabolism | Protein Multimerization | Bacterial Proteins - chemistry | Crystallography, X-Ray | RNA, Ribosomal - genetics | Ribosomal Proteins - metabolism | Escherichia coli - metabolism | RNA, Bacterial - genetics | Binding Sites | Mycobacterium tuberculosis - metabolism | RNA, Bacterial - metabolism | Protein Structure, Tertiary | Recombinant Proteins - metabolism | Ribosome Subunits, Small, Bacterial - metabolism | Mycobacterium smegmatis - genetics | Protein Structure, Secondary | Ribosomal Proteins - genetics | RNA, Ribosomal - chemistry | Ribosome Subunits, Large, Bacterial - ultrastructure | Bacterial Proteins - genetics | Models, Molecular | RNA, Ribosomal - metabolism | Recombinant Proteins - chemistry | Recombinant Proteins - genetics | Transcription Factors - genetics | Ribosome Subunits, Small, Bacterial - genetics | Ribosome Subunits, Large, Bacterial - genetics | Cryoelectron Microscopy | Ribosome Subunits, Small, Bacterial - ultrastructure | Transcription Factors - metabolism | Escherichia coli - genetics | RNA, Bacterial - chemistry | Protein Binding | Bacterial Proteins - metabolism | Gene Expression Regulation, Bacterial | Mycobacterium tuberculosis - genetics | Protein biosynthesis | Tuberculosis | RNA | Hydrogen | Structure | Crystals | Index Medicus
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6. Full Text Visualizing Ribosome Biogenesis: Parallel Assembly Pathways for the 30S Subunit
by Anke M. Mulder and Craig Yoshioka and Andrea H. Beck and Anne E. Bunner and Ronald A. Milligan and Clinton S. Potter and Bridget Carragher and James R. Williamson
Science (American Association for the Advancement of Science), ISSN 0036-8075, 10/2010, Volume 330, Issue 6004, pp. 673 - 677
Thermodynamics | Head | RNA | Ribosomal proteins | REPORTS | Ribosomes | Kinetics | Electron microscopy | Crystal structure | Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Fundamental and applied biological sciences. Psychology | Translation. Translation factors. Protein processing | Biological and medical sciences | Molecular and cellular biology | Molecular genetics | Ribosomal Proteins - chemistry | Ribosome Subunits, Small, Bacterial - metabolism | RNA, Ribosomal - chemistry | Bacterial Proteins - chemistry | Models, Molecular | Ribosomal Proteins - metabolism | Ribosome Subunits, Small, Bacterial - ultrastructure | Image Processing, Computer-Assisted | Microscopy, Electron - methods | Mass Spectrometry | RNA, Bacterial - chemistry | Protein Binding | Bacterial Proteins - metabolism | Protein Conformation | Ribosome Subunits, Small, Bacterial - chemistry | Nucleic Acid Conformation | Physiological aspects | Biosynthesis | Research | Proteins | Electron microscopes | Cellular biology | E coli | Deoxyribonucleic acid--DNA | Index Medicus
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7. Full Text The C-terminal α-helix of YsxC is essential for its binding to 50S ribosome and rRNAs
by Wicker-Planquart, Catherine and Ceres, Nicoletta and Jault, Jean-Michel
FEBS letters, ISSN 0014-5793, 07/2015, Volume 589, Issue 16, pp. 2080 - 2086
Ribosome binding | Bacillus subtilis | GTPase | YsxC | Biochemistry & Molecular Biology | Biophysics | Life Sciences & Biomedicine | Science & Technology | Cell Biology | Ribosome Subunits, Large, Bacterial - metabolism | Molecular Conformation | Bacterial Proteins - chemistry | GTP Phosphohydrolases - chemistry | Protein Stability | Binding Sites | Peptide Fragments - genetics | RNA, Bacterial - metabolism | RNA, Ribosomal, 16S - metabolism | Recombinant Proteins - metabolism | Peptide Fragments - metabolism | Ribosome Subunits, Small, Bacterial - metabolism | Bacterial Proteins - genetics | Models, Molecular | Recombinant Proteins - chemistry | Mutant Proteins - metabolism | Bacillus subtilis - enzymology | Hot Temperature | Molecular Dynamics Simulation | Arginine - chemistry | RNA, Ribosomal, 23S - chemistry | Peptide Fragments - chemistry | RNA, Ribosomal, 16S - chemistry | GTP Phosphohydrolases - metabolism | GTP Phosphohydrolases - genetics | Ribosome Subunits, Large, Bacterial - chemistry | Mutant Proteins - chemistry | RNA, Bacterial - chemistry | Bacterial Proteins - metabolism | Ligands | Ribosome Subunits, Small, Bacterial - chemistry | Histidine - chemistry | Lysine - chemistry | RNA, Ribosomal, 23S - metabolism | Bacillus subtilis - metabolism | Amino Acid Substitution | Index Medicus | Peptide Fragments | GTP Phosphohydrolases | Recombinant Proteins | Life Sciences | Histidine | Arginine | Ribosome Subunits, Small, Bacterial | Biomolecules | RNA, Bacterial | RNA, Ribosomal, 16S | Biochemistry, Molecular Biology | Bacterial Proteins | Mutant Proteins | Lysine | RNA, Ribosomal, 23S | Ribosome Subunits, Large, Bacterial
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8. Full Text Head swivel on the ribosome facilitates translocation by means of intra-subunit tRNA hybrid sites
by Yu, Yanan and Fucini, Paola and Sanbonmatsu, Karissa Y and Wilson, Daniel N and Starosta, Agata L and Onuchic, José N and Mikolajka, Aleksandra and Brünner, Matthias and Hildebrand, Peter W and Ratje, Andreas H and Connell, Sean R and Penczek, Pawel A and Spahn, Christian M. T and Loerke, Justus and Dönhöfer, Alexandra and Whitford, Paul C and Mielke, Thorsten and Hartmann, Roland K
Nature (London), ISSN 0028-0836, 12/2010, Volume 468, Issue 7324, pp. 713 - 716
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Fundamental and applied biological sciences. Psychology | Translation. Translation factors. Protein processing | Biological and medical sciences | Molecular and cellular biology | Molecular genetics | Protein Biosynthesis | Ribosome Subunits, Small, Bacterial - metabolism | Thermus thermophilus - chemistry | Movement | RNA, Transfer - metabolism | Models, Molecular | Crystallography, X-Ray | Protein Subunits - metabolism | RNA, Transfer - ultrastructure | Cryoelectron Microscopy | Ribosome Subunits, Small, Bacterial - ultrastructure | Peptide Elongation Factor G - chemistry | Peptide Elongation Factor G - metabolism | Protein Conformation | Protein Subunits - chemistry | Guanosine Diphosphate - chemistry | Guanosine Diphosphate - metabolism | Ribosome Subunits, Small, Bacterial - chemistry | RNA, Transfer - chemistry | Binding Sites | Physiological aspects | Protein biosynthesis | Research | Structure | Ribosomes | Transfer RNA | Proteins | Gram-negative bacteria | Peptides | Ribonucleic acid--RNA | Binding sites | Index Medicus
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