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Proceedings of the National Academy of Sciences - PNAS, ISSN 0027-8424, 10/2010, Volume 107, Issue 40, pp. 17152 - 17157
Differences between the structures of bacterial, archaeal, and eukaryotic ribosomes account for the selective action of antibiotics. Even minor variations in... 
Ketolides | Antibiotics | Macrolides | Drug interactions | Ribosomes | Bacteria | Nucleotides | Electron density | Genetic mutation | Binding sites | Ribosome structure | Chloramphenicol | Telithromycin | Erythromycin | Clindamycin | PROTEIN | BACTERIAL RIBOSOME | RNA GENE | MULTIDISCIPLINARY SCIENCES | telithromycin | RESISTANCE MUTATIONS | CONFERRING RESISTANCE | erythromycin | DOMAIN-II | BINDING-SITE | chloramphenicol | MACROLIDE ANTIBIOTICS | ribosome structure | clindamycin | PLEUROMUTILINS | Haloarcula marismortui - genetics | Haloarcula marismortui - metabolism | Chloramphenicol - chemistry | Erythromycin - metabolism | Molecular Sequence Data | Ribosomes - metabolism | Deinococcus - metabolism | Deinococcus - genetics | Haloarcula marismortui - chemistry | X-Ray Diffraction | Anti-Bacterial Agents - chemistry | Base Sequence | Escherichia coli - metabolism | Ketolides - metabolism | Deinococcus - chemistry | Molecular Structure | Clindamycin - chemistry | Peptidyl Transferases - metabolism | Clindamycin - metabolism | Peptidyl Transferases - chemistry | Ribosomes - chemistry | Anti-Bacterial Agents - metabolism | Escherichia coli - chemistry | RNA, Ribosomal, 23S - chemistry | Erythromycin - chemistry | Escherichia coli - genetics | Ketolides - chemistry | RNA, Ribosomal, 23S - metabolism | Chloramphenicol - metabolism | Escherichia coli | Crystals | Genetic aspects | Research | Properties | Structure | Observations | Peptidyl transferases | Drugs | lincosamides | Pathogens | rRNA | rRNA 23S | Data processing | Ribosomal subunits | Ionizing radiation | Peptidyltransferase | Crystal structure | Tunnels | Biological Sciences
Journal Article
Science (American Association for the Advancement of Science), ISSN 0036-8075, 8/2009, Volume 325, Issue 5943, pp. 1014 - 1017
Protein biosynthesis on the ribosome requires repeated cycles of ratcheting, which couples rotation of the two ribosomal subunits with respect to each other,... 
Proteins | Head | Messenger RNA | Ribosomes | Reports | Rotational states | Nucleotides | Rotation | Binding sites | Transfer RNA | Crystal structure | ANGSTROM RESOLUTION | COMPLEX | MESSENGER-RNA | TRANSFER-RNA TRANSLOCATION | CRYSTAL-STRUCTURE | MULTIDISCIPLINARY SCIENCES | MOVEMENT | HYBRID STATE | TRANSLATION TERMINATION | BINDING | 70S RIBOSOME | Ribosomal Proteins - chemistry | Anticodon - metabolism | Protein Biosynthesis | RNA, Transfer, Phe - chemistry | Ribosome Subunits, Large, Bacterial - metabolism | Anticodon - chemistry | Ribosomes - metabolism | Crystallography, X-Ray | RNA, Messenger - metabolism | Ribosomal Proteins - metabolism | Escherichia coli Proteins - biosynthesis | Escherichia coli - metabolism | Nucleic Acid Conformation | RNA, Bacterial - metabolism | RNA, Transfer, Phe - metabolism | Ribosome Subunits, Small, Bacterial - metabolism | RNA, Transfer, Met - metabolism | Ribosome Subunits, Large, Bacterial - ultrastructure | Ribosomes - chemistry | Escherichia coli Proteins - metabolism | Escherichia coli - chemistry | Ribosome Subunits, Small, Bacterial - ultrastructure | Ribosomes - ultrastructure | RNA, Transfer, Met - chemistry | Ribosome Subunits, Large, Bacterial - chemistry | RNA, Bacterial - chemistry | Protein Conformation | RNA, Messenger - chemistry | Ribosome Subunits, Small, Bacterial - chemistry | Escherichia coli Proteins - chemistry | Escherichia coli - ultrastructure | Escherichia coli | Physiological aspects | Protein biosynthesis | Genetic aspects | Research | Structure | E coli | Molecular biology | Protein synthesis | Anticodons
Journal Article
Science (American Association for the Advancement of Science), ISSN 0036-8075, 11/2010, Volume 330, Issue 6008, pp. 1203 - 1209
Crystal structures of prokaryotic ribosomes have described in detail the universally conserved core of the translation mechanism. However, many facets of the... 
Proteins | Yeasts | RESEARCH ARTICLE | Messenger RNA | RNA | Prokaryotes | Ribosomes | Crystals | Eukaryotic cells | Transfer RNA | Crystal structure | E-SITE | ANGSTROM RESOLUTION | TRANSLOCATION | MESSENGER-RNA | MULTIDISCIPLINARY SCIENCES | MOVEMENT | TRANSLATION INITIATION | TRANSFER-RNA | 70S RIBOSOME | 80S RIBOSOME | SUBUNIT | Ribosomal Proteins - analysis | Ribosomal Proteins - chemistry | RNA, Fungal - analysis | Ribosome Subunits, Large, Eukaryotic - ultrastructure | Protein Biosynthesis | Ribosome Subunits, Small, Eukaryotic - chemistry | Saccharomyces cerevisiae - genetics | RNA, Messenger - analysis | Ribosomes - metabolism | Crystallography, X-Ray | Peptide Chain Initiation, Translational | Saccharomyces cerevisiae - ultrastructure | RNA, Messenger - metabolism | Ribosomal Proteins - metabolism | Saccharomyces cerevisiae - metabolism | Ribosome Subunits, Large, Eukaryotic - metabolism | Nucleic Acid Conformation | RNA, Transfer - chemistry | RNA, Transfer - metabolism | Ribosome Subunits, Large, Eukaryotic - chemistry | RNA, Fungal - chemistry | RNA, Ribosomal - chemistry | Crystallization | Ribosomes - chemistry | Models, Molecular | RNA, Ribosomal - metabolism | Ribosome Subunits, Small, Eukaryotic - ultrastructure | Saccharomyces cerevisiae - chemistry | RNA, Fungal - metabolism | Ribosomes - ultrastructure | Saccharomyces cerevisiae Proteins - metabolism | Protein Binding | Protein Conformation | RNA, Messenger - chemistry | RNA, Ribosomal - analysis | Ribosome Subunits, Small, Eukaryotic - metabolism | Saccharomyces cerevisiae Proteins - analysis | Saccharomyces cerevisiae Proteins - chemistry | Composition | Eukaryotes | Physiological aspects | Protein biosynthesis | Research | Structure | Conformation | Networks | Protein synthesis | Bacteria | Mathematical models | Ratcheting | Translations
Journal Article
Nature (London), ISSN 1476-4687, 2012, Volume 482, Issue 7386, pp. 501 - 506
Ribosome-driven protein biosynthesis is comprised of four phases: initiation, elongation, termination and recycling. In bacteria, ribosome recycling requires... 
THERMOCOCCUS-KODAKARAENSIS | CRYSTAL-STRUCTURE | MULTIDISCIPLINARY SCIENCES | NO-GO DECAY | X-RAY-STRUCTURE | FREE PROTEIN-SYNTHESIS | ELECTRON-MICROSCOPY | MESSENGER-RNA DECAY | TRANSLATION TERMINATION | ATP-BINDING | 80S RIBOSOME | Endoribonucleases - chemistry | Pyrococcus furiosus - chemistry | Pyrococcus furiosus - metabolism | Ribosomes - metabolism | Iron-Sulfur Proteins - chemistry | Cell Cycle Proteins - chemistry | Saccharomyces cerevisiae - metabolism | Multiprotein Complexes - metabolism | ATP-Binding Cassette Transporters - chemistry | ATP-Binding Cassette Transporters - metabolism | Protein Stability | Protein Structure, Tertiary | Movement | Endoribonucleases - metabolism | Cell Cycle Proteins - metabolism | Ribosomes - chemistry | Models, Molecular | Nuclear Proteins - metabolism | Nuclear Proteins - chemistry | Peptide Termination Factors - metabolism | Saccharomyces cerevisiae - chemistry | Cryoelectron Microscopy | Multiprotein Complexes - chemistry | Ribosomes - ultrastructure | Saccharomyces cerevisiae Proteins - metabolism | Protein Binding | Iron-Sulfur Proteins - metabolism | Peptide Termination Factors - chemistry | Evolution, Molecular | Saccharomyces cerevisiae Proteins - chemistry | Eukaryotes | Ribosomes | Physiological aspects | Protein biosynthesis | Research | Structure | Archaeabacteria | Proteins | Ribonucleic acid--RNA | Transfer RNA
Journal Article
Science (American Association for the Advancement of Science), ISSN 1095-9203, 2012, Volume 335, Issue 6074, pp. 1370 - 1372
In bacteria, the hybrid transfer-messenger RNA (tmRNA) rescues ribosomes stalled on defective messenger RNAs (mRNAs). However, certain gram-negative bacteria... 
Proteins | Hydrolysis | Messenger RNA | RNA | REPORTS | Ribosomes | Bacteria | Biochemistry | Catalysis | Codons | Transfer RNA | GGQ MOTIF | CRYSTAL-STRUCTURE | MULTIDISCIPLINARY SCIENCES | ESCHERICHIA-COLI | TRUNCATED MESSENGER-RNAS | SMPB | TERMINATION | PEPTIDYL-TRANSFER-RNA | TRANS-TRANSLATION | 70S RIBOSOME | TMRNA | Protein Biosynthesis | Carboxylic Ester Hydrolases - chemistry | Ribosome Subunits, Large, Bacterial - metabolism | RNA, Transfer, Amino Acyl - chemistry | Molecular Sequence Data | Ribosomes - metabolism | Thermus thermophilus - metabolism | Crystallography, X-Ray | Thermus thermophilus - ultrastructure | RNA, Messenger - metabolism | RNA, Transfer, Amino Acyl - metabolism | Nucleic Acid Conformation | RNA, Bacterial - metabolism | Protein Structure, Tertiary | Amino Acid Sequence | Ribosome Subunits, Small, Bacterial - metabolism | Thermus thermophilus - chemistry | RNA, Ribosomal - chemistry | RNA, Transfer, Met - metabolism | Ribosomes - chemistry | Models, Molecular | RNA, Ribosomal - metabolism | Escherichia coli Proteins - metabolism | Escherichia coli - chemistry | RNA, Transfer, Met - chemistry | Ribosome Subunits, Large, Bacterial - chemistry | RNA, Bacterial - chemistry | RNA, Messenger - chemistry | Ribosome Subunits, Small, Bacterial - chemistry | Escherichia coli Proteins - chemistry | Carboxylic Ester Hydrolases - metabolism | Physiological aspects | Research | Gram-negative bacteria | Molecular structure | Peptides | Ribonucleic acid--RNA | BACTERIA | BASIC BIOLOGICAL SCIENCES | HYDROLYSIS | CRYSTAL STRUCTURE | RIBOSOMES | PROTEINS | SENSORS | 60 APPLIED LIFE SCIENCES
Journal Article
Science (American Association for the Advancement of Science), ISSN 1095-9203, 2012, Volume 335, Issue 6074, pp. 1366 - 1369
In bacteria, ribosomes stalled at the end of truncated messages are rescued by transfer-messenger RNA (tmRNA), a bifunctional molecule that acts as both a... 
Proteins | Messenger RNA | RNA | REPORTS | Ribosomes | Nucleotides | Open reading frames | Codons | Anticodon | Transfer RNA | Crystal structure | AMINOACYL-TRANSFER-RNA | STRUCTURAL BASIS | CRYSTAL-STRUCTURE | MULTIDISCIPLINARY SCIENCES | ESCHERICHIA-COLI | TAGGING ACTIVITY | TRANSFER-MESSENGER-RNA | SMALL PROTEIN-B | BINDING PROTEIN | TRANS-TRANSLATION | STALLED RIBOSOMES | Protein Biosynthesis | Bacterial Proteins - chemistry | Molecular Sequence Data | Ribosomes - metabolism | Thermus thermophilus - metabolism | Crystallography, X-Ray | Thermus thermophilus - ultrastructure | RNA, Messenger - metabolism | Thermus thermophilus - genetics | Base Sequence | Nucleic Acid Conformation | RNA, Transfer - chemistry | RNA, Bacterial - metabolism | Ribosome Subunits, Small, Bacterial - metabolism | Thermus thermophilus - chemistry | RNA, Transfer - metabolism | RNA-Binding Proteins - chemistry | Ribosomes - chemistry | Models, Molecular | Peptide Elongation Factor Tu - chemistry | Peptide Elongation Factor Tu - metabolism | Ribosome Subunits, Small, Bacterial - ultrastructure | Ribosomes - ultrastructure | RNA, Bacterial - chemistry | Bacterial Proteins - metabolism | Protein Conformation | RNA, Messenger - chemistry | Ribosome Subunits, Small, Bacterial - chemistry | RNA-Binding Proteins - metabolism | Physiological aspects | Bacteria | Codon | Research | Molecular chemistry | Gram-negative bacteria | Peptides | Ribonucleic acid--RNA | Life Sciences | Biochemistry, Molecular Biology
Journal Article
FEBS Letters, ISSN 0014-5793, 07/2015, Volume 589, Issue 16, pp. 2080 - 2086
•Mutations in YsxC conserved positively charged patch do not affect 50S YsxC binding.•YsxC-R31A and YsxC-R116A strongly bind both 30S and 50S ribosomal... 
Ribosome binding | Bacillus subtilis | GTPase | YsxC | DOMAIN | PROTEIN | BIOCHEMISTRY & MOLECULAR BIOLOGY | IDENTIFICATION | CELL BIOLOGY | BIOPHYSICS | ERA | GROWTH | SUBUNIT | Ribosome Subunits, Large, Bacterial - metabolism | Molecular Conformation | Bacterial Proteins - chemistry | GTP Phosphohydrolases - chemistry | Protein Stability | Binding Sites | Peptide Fragments - genetics | RNA, Bacterial - metabolism | RNA, Ribosomal, 16S - metabolism | Recombinant Proteins - metabolism | Peptide Fragments - metabolism | Ribosome Subunits, Small, Bacterial - metabolism | Bacterial Proteins - genetics | Models, Molecular | Recombinant Proteins - chemistry | Mutant Proteins - metabolism | Bacillus subtilis - enzymology | Hot Temperature | Molecular Dynamics Simulation | Arginine - chemistry | RNA, Ribosomal, 23S - chemistry | Peptide Fragments - chemistry | RNA, Ribosomal, 16S - chemistry | GTP Phosphohydrolases - metabolism | GTP Phosphohydrolases - genetics | Ribosome Subunits, Large, Bacterial - chemistry | Mutant Proteins - chemistry | RNA, Bacterial - chemistry | Bacterial Proteins - metabolism | Ligands | Ribosome Subunits, Small, Bacterial - chemistry | Histidine - chemistry | Lysine - chemistry | RNA, Ribosomal, 23S - metabolism | Bacillus subtilis - metabolism | Amino Acid Substitution | Peptide Fragments | GTP Phosphohydrolases | Recombinant Proteins | Life Sciences | Histidine | Arginine | Ribosome Subunits, Small, Bacterial | Biomolecules | RNA, Bacterial | RNA, Ribosomal, 16S | Biochemistry, Molecular Biology | Bacterial Proteins | Mutant Proteins | Lysine | RNA, Ribosomal, 23S | Ribosome Subunits, Large, Bacterial
Journal Article
Proceedings of the National Academy of Sciences - PNAS, ISSN 0027-8424, 10/2010, Volume 107, Issue 40, pp. 17158 - 17163
The increasing prevalence of antibiotic-resistant pathogens reinforces the need for structures of antibiotic-ribosome complexes that are accurate enough to... 
Molecules | Antibiotics | Macrolides | Drug interactions | Ribosomes | Drug design | Biochemistry | Potassium | Functional groups | Lactones | Structure-based drug design | Crystal structure | structure-based drug design | DESIGN | RNA | MULTIDISCIPLINARY SCIENCES | KETOLIDES | MITOCHONDRIAL-DNA | NUCLEOTIDE | CHLORAMPHENICOL ACETYLTRANSFERASE | PEPTIDYL TRANSFERASE CENTER | crystal structure | RESISTANCE | BINDING-SITE | MACROLIDE ANTIBIOTICS | Haloarcula marismortui - genetics | Haloarcula marismortui - metabolism | Chloramphenicol - chemistry | Azithromycin - metabolism | Bacterial Proteins - chemistry | Erythromycin - metabolism | Ribosomes - metabolism | Thermus thermophilus - metabolism | Deinococcus - metabolism | Deinococcus - genetics | Haloarcula marismortui - chemistry | Thermus thermophilus - genetics | Anti-Bacterial Agents - chemistry | Ketolides - metabolism | Deinococcus - chemistry | Molecular Structure | Binding Sites | Thermus thermophilus - chemistry | Azithromycin - chemistry | Ribosomes - chemistry | Anti-Bacterial Agents - metabolism | Erythromycin - chemistry | Ketolides - chemistry | Bacterial Proteins - metabolism | Chloramphenicol - metabolism | Crystals | Chemical properties | Research | Properties | Bacterial genetics | Structure | Observations | Antibacterial agents | Pathogens | lactones | Azithromycin | Macrolide antibiotics | Chloramphenicol | Telithromycin | Models | Erythromycin | Conformation | ANTIBIOTICS | CHLORAMPHENICOL | ESCHERICHIA COLI | LACTONES | SPECIFICITY | ERYTHROMYCIN | ELECTRON DENSITY | RIBOSOMES | 60 APPLIED LIFE SCIENCES | PATHOGENS | Biological Sciences
Journal Article
Cell, ISSN 0092-8674, 11/2001, Volume 107, Issue 5, pp. 679 - 688
Journal Article
Nature, ISSN 0028-0836, 05/2016, Volume 534, Issue 7605, pp. 133 - 137
Ribosome biogenesis is a highly complex process in eukaryotes, involving temporally and spatially regulated ribosomal protein (r-protein) binding and ribosomal... 
REFINEMENT | COMPLEX | RNA | BIOGENESIS | INITIATION | MULTIDISCIPLINARY SCIENCES | RESOLUTION | MATURATION | IDENTIFICATION | ASSOCIATION | SUBUNIT | RNA, Fungal - ultrastructure | GTP Phosphohydrolases - ultrastructure | Saccharomyces cerevisiae - ultrastructure | DNA, Ribosomal Spacer - metabolism | RNA, Ribosomal - genetics | GTP Phosphohydrolases - chemistry | Saccharomyces cerevisiae - metabolism | Cell Nucleus - metabolism | Ribosome Subunits, Large, Eukaryotic - metabolism | DNA, Ribosomal Spacer - genetics | Base Sequence | DNA, Ribosomal Spacer - ultrastructure | Ribosome Subunits, Large, Eukaryotic - chemistry | Models, Molecular | Ribonucleoproteins - metabolism | Nuclear Proteins - chemistry | Saccharomyces cerevisiae - chemistry | RNA, Ribosomal - ultrastructure | Saccharomyces cerevisiae - cytology | Ribosomal Proteins - isolation & purification | GTP Phosphohydrolases - metabolism | Saccharomyces cerevisiae Proteins - metabolism | GTP-Binding Proteins - metabolism | Saccharomyces cerevisiae Proteins - chemistry | Ribosomal Proteins - chemistry | Ribosome Subunits, Large, Eukaryotic - ultrastructure | Nuclear Proteins - ultrastructure | Molecular Sequence Data | Cytoplasm - metabolism | Ribosomal Proteins - metabolism | Ribosomal Proteins - ultrastructure | Saccharomyces cerevisiae Proteins - isolation & purification | RNA, Fungal - genetics | Active Transport, Cell Nucleus | Ribonucleoproteins - chemistry | Saccharomyces cerevisiae Proteins - ultrastructure | Catalytic Domain | GTP-Binding Proteins - chemistry | RNA, Ribosomal - metabolism | Nuclear Proteins - metabolism | GTP-Binding Proteins - ultrastructure | DNA, Ribosomal Spacer - chemistry | Cell Nucleus - ultrastructure | Rotation | RNA, Fungal - metabolism | Cryoelectron Microscopy | Protein Binding | Cell Nucleus - chemistry | Ribonucleoproteins - ultrastructure | Nucleolus organizer region | Protein research | Research | Ribosomes | Protein binding | Genetic research | Proteins | G proteins | Ribosomal RNA | Adenosine triphosphatase | Protein biosynthesis | Cell research | Polypeptides | Molecular structure | Ribonucleic acid--RNA
Journal Article