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1. Full Text NODULE INCEPTION Directly Targets NF-Y Subunit Genes to Regulate Essential Processes of Root Nodule Development in Lotus japonicus
by Soyano, Takashi and Kouchi, Hiroshi and Hirota, Atsuko and Hayashi, Makoto
PLoS Genetics, ISSN 1553-7390, 2013, Volume 9, Issue 3, p. e1003352
The interactions of legumes with symbiotic nitrogen-fixing bacteria cause the formation of specialized lateral root organs called root nodules. It has been... 
TRANSCRIPTION FACTORS | MEDICAGO-TRUNCATULA | RHIZOBIAL INFECTION | GENETICS & HEREDITY | FUNCTIONAL-ANALYSIS | CELL-CYCLE | NODULATION FACTORS | INTRACELLULAR ACCOMMODATION | SYMBIOTIC SIGNALS | GRAS PROTEINS | KINASE GENE | Root Nodules, Plant - metabolism | Signal Transduction | CCAAT-Binding Factor - genetics | Root Nodules, Plant - microbiology | Root Nodules, Plant - genetics | Organogenesis | Symbiosis - genetics | Biological Evolution | Plant Proteins - genetics | CCAAT-Binding Factor - metabolism | Fabaceae - metabolism | Gene Expression Regulation, Plant | Loteae - growth & development | Plant Proteins - metabolism | Transcription Factors | Fabaceae - genetics | Root Nodules, Plant - growth & development | Loteae - genetics | Transcription factors | Plant physiology | Plant genetics | Development | Genetic aspects | Research | Plants | Identification and classification | Testing | Symbiosis | Proteins | Cell division | Legumes | Kinases
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2. Full Text An integrated analysis of plant and bacterial gene expression in symbiotic root nodules using laser‐capture microdissection coupled to RNA sequencing
by Roux, Brice and Rodde, Nathalie and Jardinaud, Marie‐Françoise and Timmers, Ton and Sauviac, Laurent and Cottret, Ludovic and Carrère, Sébastien and Sallet, Erika and Courcelle, Emmanuel and Moreau, Sandra and Debellé, Frédéric and Capela, Delphine and Carvalho‐Niebel, Fernanda and Gouzy, Jérôme and Bruand, Claude and Gamas, Pascal
The Plant Journal, ISSN 0960-7412, 03/2014, Volume 77, Issue 6, pp. 817 - 837
Summary Rhizobium‐induced root nodules are specialized organs for symbiotic nitrogen fixation. Indeterminate‐type nodules are formed from an apical meristem... 
model legume | Medicago truncatula | nitrogen‐fixing symbiosis | regulators | transcriptome | Sinorhizobium meliloti | nitrogen-fixing symbiosis | ANAPHASE-PROMOTING COMPLEX | SINORHIZOBIUM-MELILOTI | POTENTIAL REGULATORS | PLANT SCIENCES | NITROGEN-FIXATION | LOTUS-JAPONICUS | MEDICAGO-TRUNCATULA | NITRIC-OXIDE | ERF TRANSCRIPTION FACTOR | RHIZOBIUM-MELILOTI | Symbiosis | Sinorhizobium meliloti - genetics | Gene Expression | Medicago truncatula - genetics | Genes, Bacterial - genetics | Plant Roots - genetics | Root Nodules, Plant - genetics | Gene Expression Profiling | Laser Capture Microdissection - methods | Sequence Analysis, RNA - methods | Sinorhizobium meliloti - cytology | Medicago truncatula - cytology | Meristem - genetics | Gene Expression Regulation, Plant | Nitrogen Fixation | Plant biology | Bacteria | Gene expression | Ribonucleic acid--RNA
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3. Full Text Genome-Wide Medicago truncatula Small RNA Analysis Revealed Novel MicroRNAs and Isoforms Differentially Regulated in Roots and Nodules
by Christine Lelandais-Brière and Loreto Naya and Erika Sallet and Fanny Calenge and Florian Frugier and Caroline Hartmann and Jérome Gouzy and Martin Crespi
The Plant Cell, ISSN 1040-4651, 9/2009, Volume 21, Issue 9, pp. 2780 - 2796
Posttranscriptional regulation of a variety of mRNAs by small 21-to 24-nucleotide RNAs, notably the microRNAs (miRNAs), is emerging as a novel developmental... 
Protein isoforms | RNA precursors | MicroRNA | RNA | Small interfering RNA | Genomes | Plants | Nucleotides | Root tips | Nodules | ARABIDOPSIS-THALIANA | BIOCHEMISTRY & MOLECULAR BIOLOGY | TARGET RECOGNITION | DOWN-REGULATION | PLANT SCIENCES | CELL BIOLOGY | ORYZA-SATIVA | MESSENGER-RNA | COMPUTATIONAL IDENTIFICATION | MIRNA | GENES | SMALL NONCODING RNAS | PLANT MICRORNAS | Medicago truncatula - genetics | RNA Processing, Post-Transcriptional | Plant Roots - genetics | Root Nodules, Plant - genetics | Chromosome Mapping | Gene Expression Profiling | Genome, Plant | RNA, Plant - genetics | Sequence Analysis, RNA | Comparative Genomic Hybridization | Meristem - genetics | Gene Expression Regulation, Plant | MicroRNAs - genetics | Legumes | Genomics | Research | Properties | Genetic regulation | Nitrogen | Mimosaceae | Beans | Messenger RNA | Fixation | Physiological aspects | Roots (Botany) | Genetic aspects | RNA, Plant | Medicago truncatula | Meristem | Life Sciences | Plant Roots | Root Nodules, Plant | MicroRNAs | Vegetal Biology
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4. Full Text NODULE ROOT and COCHLEATA Maintain Nodule Development and Are Legume Orthologs of Arabidopsis BLADE-ON-PETIOLE Genes
by Jean-Malo Couzigou and Vladimir Zhukov and Samuel Mondy and Ghada Abu el Heba and Viviane Cosson and T.H. Noel Ellis and Mike Ambrose and Jiangqi Wen and Million Tadege and Igor Tikhonovich and Kirankumar S. Mysore and Joanna Putterill and Julie Hofer and Alexei Y. Borisov and Pascal Ratet
The Plant Cell, ISSN 1040-4651, 11/2012, Volume 24, Issue 11, pp. 4498 - 4510
During their symbiotic interaction with rhizobia, legume plants develop symbiosis-specific organs on their roots, called nodules, that house nitrogen-fixing... 
Symbiosis | Legumes | Meristems | Peas | Phenotypes | RESEARCH ARTICLES | Plant roots | Plants | Genetic mutation | Nodules | Stipules | SINORHIZOBIUM-MELILOTI | BIOCHEMISTRY & MOLECULAR BIOLOGY | CONTROLS LEAF | BLADE-ON-PETIOLE1 | CLE PEPTIDES | MEDICAGO-TRUNCATULA NODULATION | LARGE-SCALE | PLANT SCIENCES | CELL BIOLOGY | BTB/POZ DOMAIN | INFECTION | EXPRESSION | SYMBIOSIS | Medicago truncatula - genetics | Sinorhizobium meliloti - physiology | Root Nodules, Plant - microbiology | Molecular Sequence Data | Plant Roots - genetics | Root Nodules, Plant - genetics | Peas - microbiology | Medicago truncatula - microbiology | Phylogeny | Recombinant Fusion Proteins | Base Sequence | Gene Expression Regulation, Plant | Flowers - microbiology | Plant Proteins - metabolism | Root Nodules, Plant - growth & development | Plant Roots - growth & development | Nitrogen Fixation | Protein Structure, Tertiary | Medicago truncatula - growth & development | Peas - growth & development | Flowers - cytology | Plant Roots - cytology | Root Nodules, Plant - cytology | Plant Roots - microbiology | Sequence Analysis, DNA | Flowers - growth & development | Plant Leaves - cytology | Arabidopsis - genetics | Plant Proteins - genetics | Phenotype | Medicago truncatula - cytology | Plant Leaves - genetics | Plant Leaves - growth & development | Mutation | Peas - genetics | Flowers - genetics | Plant Leaves - microbiology
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5. Full Text NODULE INCEPTION creates a long-distance negative feedback loop involved in homeostatic regulation of nodule organ production
by Takashi Soyano and Hideki Hirakawa and Shusei Sato and Makoto Hayashi and Masayoshi Kawaguchi
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 10/2014, Volume 111, Issue 40, pp. 14607 - 14612
Autoregulatory negative-feedback loops play important roles in fine-balancing tissue and organ development. Such loops are composed of short-range... 
Cytokinins | Genes | Plant roots | Control loops | Nodulation | Cell division | Gene expression regulation | Infections | Plants | Nodules | NODULATION | LOTUS-JAPONICUS | STEM-CELL FATE | MEDIATES SYSTEMIC REGULATION | MEDICAGO-TRUNCATULA | MULTIDISCIPLINARY SCIENCES | CLE PEPTIDES | RECEPTOR-LIKE KINASE | ARABIDOPSIS | ROOT DEVELOPMENT | SPLIT-ROOT | Symbiosis | Green Fluorescent Proteins - metabolism | Plant Shoots - microbiology | Root Nodules, Plant - microbiology | Plant Roots - genetics | Root Nodules, Plant - genetics | Loteae - microbiology | Green Fluorescent Proteins - genetics | Signal Transduction - genetics | Plant Roots - microbiology | Reverse Transcriptase Polymerase Chain Reaction | Rhizobium - physiology | Host-Pathogen Interactions | Plant Proteins - genetics | Feedback, Physiological | Plant Root Nodulation - genetics | Plants, Genetically Modified | Gene Expression Regulation, Plant | Mutation | Plant Shoots - genetics | Loteae - genetics | Homeostasis | Botanical research | Research | Biological control systems | Biological Sciences
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6. Full Text RNA-seq transcriptome profiling reveals that Medicago truncatula nodules acclimate N2 fixation before emerging P deficiency reaches the nodules
by Cabeza, Ricardo A and Liese, Rebecca and Lingner, Annika and Von Stieglitz, Ilsabe and Neumann, Janice and Salinas-Riester, Gabriela and Pommerenke, Claudia and Dittert, Klaus and Schulze, Joachim
Journal of Experimental Botany, ISSN 0022-0957, 11/2014, Volume 65, Issue 20, pp. 6035 - 6048
Legume nodules are plant tissues with an exceptionally high concentration of phosphorus (P), which, when there is scarcity of P, is preferentially maintained... 
Legumes | Medicago truncatula | RNA-seq | fixation | nodulation | nitrogen fixation | P stress | Sinorhizobium meliloti | Medicago truncatula - genetics | Sinorhizobium meliloti - physiology | Root Nodules, Plant - microbiology | Transcriptome | Plant Roots - genetics | Root Nodules, Plant - genetics | Medicago truncatula - microbiology | Plant Roots - physiology | Gene Expression Regulation, Plant | Nitrogen Fixation | Symbiosis | Nitrogen - metabolism | Acclimatization | Plant Roots - microbiology | Root Nodules, Plant - physiology | Medicago truncatula - physiology | Plant Proteins - genetics | Phenotype | Sequence Analysis, RNA | Plant Leaves - genetics | Phosphorus - metabolism | Plant Root Nodulation | Phosphorus - deficiency | Plant Leaves - microbiology | Plant Leaves - physiology | N2 fixation | Research Paper
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7. Full Text Soybean miR172c Targets the Repressive AP2 Transcription Factor NNC1 to Activate ENOD40 Expression and Regulate Nodule Initiation
by Youning Wang and Lixiang Wang and Yanmin Zou and Liang Chen and Zhaoming Cai and Senlei Zhang and Fang Zhao and Yinping Tian and Qiong Jiang and Brett J. Ferguson and Peter M. Gresshoff and Xia Li
The Plant Cell, ISSN 1040-4651, 12/2014, Volume 26, Issue 12, pp. 4782 - 4801
MicroRNAs are noncoding RNAs that act as master regulators to modulate various biological processes by posttranscriptionally repressing their target genes.... 
Soybeans | MicroRNA | RESEARCH ARTICLES | Genes | Plant roots | Nodulation | Infections | Plants | Family members | Nodules | Plant cells | SIGNAL | RESPONSE REGULATORS | SUCROSE SYNTHASE | BIOCHEMISTRY & MOLECULAR BIOLOGY | MEDIATED TRANSFORMATION | MICRORNAS | PLANT SCIENCES | CELL BIOLOGY | RECEPTOR KINASE | NODULATION | AGROBACTERIUM-RHIZOGENES | GENE-EXPRESSION | SYMBIOSIS | Transcription Factors - physiology | Root Nodules, Plant - metabolism | Signal Transduction | Molecular Sequence Data | Root Nodules, Plant - genetics | MicroRNAs - metabolism | Bradyrhizobium - physiology | Transcription Factors - genetics | Soybeans - genetics | Soybeans - metabolism | Transcription Factors - metabolism | Sequence Alignment | Sequence Analysis, RNA | Plant Root Nodulation - genetics | Base Sequence | Soybeans - microbiology | Gene Expression Regulation, Plant | MicroRNAs - genetics | MicroRNAs - physiology | Botanical research | Protein research | Transcription factors | Physiological aspects | Genetic aspects | Soybean | Research | Gene expression
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8. Full Text A gene expression atlas of the model legume Medicago truncatula
by Benedito, Vagner A and Torres‐Jerez, Ivone and Murray, Jeremy D and Andriankaja, Andry and Allen, Stacy and Kakar, Klementina and Wandrey, Maren and Verdier, Jérôme and Zuber, Hélène and Ott, Thomas and Moreau, Sandra and Niebel, Andreas and Frickey, Tancred and Weiller, Georg and He, Ji and Dai, Xinbin and Zhao, Patrick X and Tang, Yuhong and Udvardi, Michael K
The Plant Journal, ISSN 0960-7412, 08/2008, Volume 55, Issue 3, pp. 504 - 513
Summary Legumes played central roles in the development of agriculture and civilization, and today account for approximately one‐third of the world’s primary... 
Medicago truncatula | development | nodule | seed | transcriptome | Development | Seed | Nodule | Transcriptome | GLOBAL CHANGES | FAMILY | PLANT SCIENCES | NODULATION | ARABIDOPSIS TRANSCRIPTION FACTORS | NITROGEN-FIXATION | ARBUSCULAR MYCORRHIZAL SYMBIOSIS | REGULATORS | RICH | GENOME-WIDE IDENTIFICATION | Symbiosis | Gene Expression | Medicago truncatula - genetics | Plant Roots - metabolism | Root Nodules, Plant - metabolism | Oligonucleotide Array Sequence Analysis | Species Specificity | Genomics | Sinorhizobium meliloti - physiology | Root Nodules, Plant - microbiology | Databases, Genetic | Plant Roots - genetics | Root Nodules, Plant - genetics | Gene Expression Profiling | Medicago truncatula - microbiology | Medicago truncatula - metabolism | Plant Roots - microbiology | RNA, Messenger - metabolism | Plant Leaves - genetics | Plant Leaves - metabolism | Plant Leaves - microbiology | Cluster Analysis | Nitrogen Fixation | Legumes | Beans | Gene expression | Mimosaceae | Analysis | Models | Botany
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9. Full Text The peptide-encoding CEP1 gene modulates lateral root and nodule numbers in Medicago truncatula
by Nijat Imin and Nadiatul A. Mohd-Radzman and Huw A. Ogilvie and Michael A. Djordjevic
Journal of Experimental Botany, ISSN 0022-0957, 1/2013, Volume 64, Issue 17, pp. 5395 - 5409
The role of MtCEP1, a member of the CEP (C-terminally encoded peptide) signaling peptide family, was examined in Medicago truncatula root development. MtCEP1... 
RESEARCH PAPER | lateral root formation | ARABIDOPSIS-THALIANA | SINORHIZOBIUM-MELILOTI | CLE PEPTIDES | ARBUSCULAR MYCORRHIZA | Biological nitrogen fixation | WHITE CLOVER | environmental regulation | CEP | PLANT SCIENCES | NITROGEN-FIXATION | root development | MAX L MERR | small signalling peptides | nodulation | CELL-DIFFERENTIATION | SECRETED PEPTIDE | ABSCISIC-ACID | Medicago truncatula - genetics | Sinorhizobium meliloti - physiology | Peptides - genetics | Plant Roots - genetics | Root Nodules, Plant - genetics | Promoter Regions, Genetic - genetics | Plant Roots - physiology | RNA Interference | Plants, Genetically Modified | RNA, Plant - chemistry | Gene Expression Regulation, Plant | Plant Proteins - metabolism | Root Nodules, Plant - growth & development | Plant Roots - growth & development | Genes, Reporter | Nitrogen Fixation | Symbiosis | Nitrogen - metabolism | Carbon Dioxide - metabolism | Signal Transduction | Medicago truncatula - growth & development | Plant Roots - cytology | RNA, Plant - genetics | Root Nodules, Plant - cytology | Root Nodules, Plant - physiology | Peptides - pharmacology | Medicago truncatula - physiology | Plant Proteins - genetics | Phenotype | Sequence Analysis, RNA | Medicago truncatula - cytology | Plant Root Nodulation
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10. Full Text The High-Affinity Phosphate Transporter GmPT5 Regulates Phosphate Transport to Nodules and Nodulation in Soybean
by Lu Qin and Jing Zhao and Jiang Tian and Liyu Chen and Zhaoan Sun and Yongxiang Guo and Xing Lu and Mian Gu and Guohua Xu and Hong Liao
Plant Physiology, ISSN 0032-0889, 8/2012, Volume 159, Issue 4, pp. 1634 - 1643
Legume biological nitrogen (N) fixation is the most important N source in agroecosystems, but it is also a process requiring a considerable amount of... 
Phosphates | Legumes | Yeasts | Soybeans | Sustainable agriculture | Plant roots | Nodulation | Plants | Transgenic plants | ENVIRONMENTAL STRESS AND ADAPTATION TO STRESS | Nodules | PHOSPHORUS DEFICIENCY | NITROGEN-FIXATION | AGRICULTURAL SYSTEMS | GENE | KINETIC-PROPERTIES | PLANTS | CARBON COSTS | PISUM-SATIVUM | PHT1 FAMILY | RICE | PLANT SCIENCES | Root Nodules, Plant - metabolism | Glucuronidase - metabolism | Phosphate Transport Proteins - metabolism | Molecular Sequence Data | Root Nodules, Plant - genetics | Rhizobium - physiology | Soybeans - genetics | Saccharomyces cerevisiae - metabolism | Soybeans - growth & development | Plant Root Nodulation - physiology | Biological Transport | Plant Root Nodulation - genetics | RNA Interference | Plants, Genetically Modified | Gene Expression Regulation, Plant | Biological Assay | Plant Proteins - metabolism | Phosphate Transport Proteins - genetics | Nitrogen - metabolism | Solubility | Plant Proteins - genetics | Phosphates - metabolism | Genes, Plant - genetics | Phosphorus - metabolism | Hydroponics | Soybeans - microbiology | Soybeans - physiology | Suppression, Genetic | Biological transport | Plant genetics | Physiological aspects | Genetic aspects | Soybean | Research
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11. Full Text Cytokinin biosynthesis promotes cortical cell responses during nodule development
by Reid, Dugald and Nadzieja, Marcin and Novák, Ondřej and Heckmann, Anne B and Sandal, Niels and Stougaard, Jens
Plant Physiology, ISSN 0032-0889, 09/2017, Volume 175, Issue 1, pp. 361 - 375
Legume mutants have shown the requirement for receptor-mediated cytokinin signaling in symbiotic nodule organogenesis. While the receptors are central... 
LOTUS-JAPONICUS | MEDICAGO-TRUNCATULA ROOT | LATERAL ROOT | ERN1 TRANSCRIPTION FACTOR | RHIZOBIAL INFECTION | CA2+ SPIKING | GENE-EXPRESSION | DEPENDENT PROTEIN-KINASE | TRANS-ZEATIN | NEGATIVE REGULATOR | PLANT SCIENCES | Symbiosis | Signal Transduction | Gene Expression Regulation, Developmental - genetics | Plant Roots - genetics | Root Nodules, Plant - genetics | Plant Roots - cytology | Cytokinins - biosynthesis | Loteae - cytology | Root Nodules, Plant - cytology | Root Nodules, Plant - physiology | Plant Roots - physiology | Plant Growth Regulators - biosynthesis | Plant Proteins - genetics | Models, Biological | Plant Root Nodulation | Gene Expression Regulation, Plant | Loteae - growth & development | Plant Proteins - metabolism | Rhizobiaceae - physiology | Root Nodules, Plant - growth & development | Loteae - physiology | Plant Roots - growth & development | Loteae - genetics | Cytokinins | Legumes | Beans | Physiological aspects | Genetic aspects | Biosynthesis | Gene expression | Observations | Mimosaceae | Developmental biology
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12. Full Text Two MicroRNAs Linked to Nodule Infection and Nitrogen-Fixing Ability in the Legume Lotus japonicus
by Ana De Luis and Katharina Markmann and Valérie Cognat and Dennis B. Holt and Myriam Charpentier and Martin Parniske and Jens Stougaard and Olivier Voinnet
Plant Physiology, ISSN 0032-0889, 12/2012, Volume 160, Issue 4, pp. 2137 - 2154
Legumes overcome nitrogen shortage by developing root nodules in which symbiotic bacteria fix atmospheric nitrogen in exchange for host-derived carbohydrates... 
Symbiosis | Legumes | MicroRNA | RNA | Plant roots | Nodulation | Nitrogen fixation | Infections | Plants | Nodules | PLANTS INTERACTING WITH OTHER ORGANISMS | SOYBEAN MICRORNAS | SMALL RNA | COPPER HOMEOSTASIS | AGROBACTERIUM-RHIZOGENES | CBB-TYPE CYTOCHROME-OXIDASE | MEDICAGO-TRUNCATULA | ROOT-NODULES | BRADYRHIZOBIUM-JAPONICUM | GENE-EXPRESSION | PLANT MICRORNAS | PLANT SCIENCES | Species Specificity | Root Nodules, Plant - microbiology | Molecular Sequence Data | Root Nodules, Plant - genetics | MicroRNAs - metabolism | Gene Expression Profiling | Symbiosis - genetics | Nitrogen Fixation - genetics | Base Sequence | Copper - metabolism | Gene Expression Regulation, Plant | Plant Proteins - metabolism | Reproducibility of Results | Gene Library | Molecular Sequence Annotation | Loteae - microbiology | Up-Regulation - genetics | Bradyrhizobium - physiology | Laccase - genetics | Transcription Factors - metabolism | Plant Proteins - genetics | Sequence Analysis, RNA | Genes, Plant - genetics | MicroRNAs - genetics | Homeostasis - genetics | Loteae - genetics | Beans | Plant genetics | Physiological aspects | Genetic aspects | Research | Gene expression | Health aspects | Mimosaceae | Life Sciences | Molecular biology | Cellular Biology | Biochemistry, Molecular Biology
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