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1. Full Text Fate map of Medicago truncatula root nodules
by Xiao, T.T and Schilderink, S and Moling, S and Deinum, E.E and Kondorosi, E and Franssen, H and Kulikova, O and Niebel, A and Bisseling, T
Development, ISSN 0950-1991, 2014, Volume 141, Issue 18, pp. 3517 - 3528
Legume root nodules are induced by N-fixing rhizobium bacteria that are hosted in an intracellular manner. These nodules are formed by reprogramming... 
Nodule primordium | Inner cortex | Medicago | Indeterminate root nodule | Endodermis | Nodule meristem | PROTEIN | NOD FACTORS | INITIATION | RHIZOBIAL INFECTION | DEVELOPMENTAL BIOLOGY | CORTICAL-CELLS | ACTIVATOR | ARABIDOPSIS | DIFFERENTIATION | EXPRESSION | SYMBIOSIS | Meristem - cytology | Medicago truncatula - cytology | Computer Simulation | Genetic Markers - genetics | Meristem - physiology | Histocytochemistry | Root Nodules, Plant - microbiology | Medicago truncatula - microbiology | Root Nodules, Plant - cytology | Cell Differentiation - physiology | Morphogenesis - physiology | Cell Lineage - physiology | cortical-cells | differentiation | expression | initiation | symbiosis | protein | rhizobial infection | activator | nod factors | arabidopsis
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2. Full Text NODULE INCEPTION Directly Targets NF-Y Subunit Genes to Regulate Essential Processes of Root Nodule Development in Lotus japonicus
by Soyano, Takashi and Kouchi, Hiroshi and Hirota, Atsuko and Hayashi, Makoto
PLoS Genetics, ISSN 1553-7390, 2013, Volume 9, Issue 3, p. e1003352
The interactions of legumes with symbiotic nitrogen-fixing bacteria cause the formation of specialized lateral root organs called root nodules. It has been... 
TRANSCRIPTION FACTORS | MEDICAGO-TRUNCATULA | RHIZOBIAL INFECTION | GENETICS & HEREDITY | FUNCTIONAL-ANALYSIS | CELL-CYCLE | NODULATION FACTORS | INTRACELLULAR ACCOMMODATION | SYMBIOTIC SIGNALS | GRAS PROTEINS | KINASE GENE | Root Nodules, Plant - metabolism | Signal Transduction | CCAAT-Binding Factor - genetics | Root Nodules, Plant - microbiology | Root Nodules, Plant - genetics | Organogenesis | Symbiosis - genetics | Biological Evolution | Plant Proteins - genetics | CCAAT-Binding Factor - metabolism | Fabaceae - metabolism | Gene Expression Regulation, Plant | Loteae - growth & development | Plant Proteins - metabolism | Transcription Factors | Fabaceae - genetics | Root Nodules, Plant - growth & development | Loteae - genetics | Transcription factors | Plant physiology | Plant genetics | Development | Genetic aspects | Research | Plants | Identification and classification | Testing | Symbiosis | Proteins | Cell division | Legumes | Kinases
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3. Full Text Coordinating nodule morphogenesis with rhizobial infection in legumes
by Oldroyd, Giles E. D and Downie, J. Allan
Annual Review of Plant Biology, ISSN 1543-5008, 2008, Volume 59, Issue 1, pp. 519 - 546
The formation of nitrogen-fixing nodules on legumes requires an integration of infection by rhizobia at the root epidermis and the initiation of cell division... 
Bacterial infection | Nitrogen fixation | Nodulation | Legumes | FACTOR SIGNAL-TRANSDUCTION | ROOT HAIR-CELLS | legumes | DEPENDENT PROTEIN-KINASE | CALCIUM SPIKING | bacterial infection | LIPO-OLIGOSACCHARIDE SIGNALS | PLANT SCIENCES | LOTUS-JAPONICUS | AUXIN TRANSPORT REGULATION | MEDICAGO-TRUNCATULA | SYMBIOTICALLY DEFECTIVE-MUTANTS | NODULATION FACTOR-PERCEPTION | nodulation | nitrogen fixation | Plant Growth Regulators - physiology | Root Nodules, Plant - microbiology | Homeostasis | Plant Diseases - microbiology | Rhizobium - pathogenicity | Cell Adhesion | Fabaceae - physiology | Root Nodules, Plant - physiology | Fabaceae - microbiology | Nitrogen Fixation | Beans | Fixation | Analysis | Physiological aspects | Environmental aspects | Rhizobium | Nitrogen | Mimosaceae
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4. Full Text The molecular network governing nodule organogenesis and infection in the model legume Lotus japonicus
by Madsen, Lene H and Tirichine, Leïla and Jurkiewicz, Anna and Sullivan, John T and Heckmann, Anne B and Bek, Anita S and Ronson, Clive W and James, Euan K and Stougaard, Jens
Nature Communications, ISSN 2041-1723, 2010, Volume 1, Issue 1, pp. 10 - 12
Bacterial infection of interior tissues of legume root nodules is controlled at the epidermal cell layer and is closely coordinated with progressing organ... 
SESBANIA-ROSTRATA | MEDICAGO-TRUNCATULA | MESORHIZOBIUM-LOTI | INTERCELLULAR INVASION | CA2+ SPIKING | MULTIDISCIPLINARY SCIENCES | FUNGAL SYMBIOSIS | DEPENDENT PROTEIN-KINASE | CALCIUM SPIKING | TRANSCRIPTION FACTOR | ROOT HAIRS | Microscopy, Electron, Transmission | Root Nodules, Plant - metabolism | Plants, Genetically Modified - growth & development | Loteae - metabolism | Root Nodules, Plant - microbiology | Gene Expression Regulation, Plant - genetics | Genotype | Loteae - microbiology | Alphaproteobacteria - physiology | Alphaproteobacteria - growth & development | Loteae - ultrastructure | Plant Proteins - genetics | Plants, Genetically Modified - ultrastructure | Plants, Genetically Modified - metabolism | Plants, Genetically Modified - microbiology | Gene Expression Regulation, Plant - physiology | Root Nodules, Plant - ultrastructure | Loteae - growth & development | Plant Proteins - metabolism | Root Nodules, Plant - growth & development
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5. Full Text NODULE ROOT and COCHLEATA Maintain Nodule Development and Are Legume Orthologs of Arabidopsis BLADE-ON-PETIOLE Genes
by Jean-Malo Couzigou and Vladimir Zhukov and Samuel Mondy and Ghada Abu el Heba and Viviane Cosson and T.H. Noel Ellis and Mike Ambrose and Jiangqi Wen and Million Tadege and Igor Tikhonovich and Kirankumar S. Mysore and Joanna Putterill and Julie Hofer and Alexei Y. Borisov and Pascal Ratet
The Plant Cell, ISSN 1040-4651, 11/2012, Volume 24, Issue 11, pp. 4498 - 4510
During their symbiotic interaction with rhizobia, legume plants develop symbiosis-specific organs on their roots, called nodules, that house nitrogen-fixing... 
Symbiosis | Legumes | Meristems | Peas | Phenotypes | RESEARCH ARTICLES | Plant roots | Plants | Genetic mutation | Nodules | Stipules | SINORHIZOBIUM-MELILOTI | BIOCHEMISTRY & MOLECULAR BIOLOGY | CONTROLS LEAF | BLADE-ON-PETIOLE1 | CLE PEPTIDES | MEDICAGO-TRUNCATULA NODULATION | LARGE-SCALE | PLANT SCIENCES | CELL BIOLOGY | BTB/POZ DOMAIN | INFECTION | EXPRESSION | SYMBIOSIS | Medicago truncatula - genetics | Sinorhizobium meliloti - physiology | Root Nodules, Plant - microbiology | Molecular Sequence Data | Plant Roots - genetics | Root Nodules, Plant - genetics | Peas - microbiology | Medicago truncatula - microbiology | Phylogeny | Recombinant Fusion Proteins | Base Sequence | Gene Expression Regulation, Plant | Flowers - microbiology | Plant Proteins - metabolism | Root Nodules, Plant - growth & development | Plant Roots - growth & development | Nitrogen Fixation | Protein Structure, Tertiary | Medicago truncatula - growth & development | Peas - growth & development | Flowers - cytology | Plant Roots - cytology | Root Nodules, Plant - cytology | Plant Roots - microbiology | Sequence Analysis, DNA | Flowers - growth & development | Plant Leaves - cytology | Arabidopsis - genetics | Plant Proteins - genetics | Phenotype | Medicago truncatula - cytology | Plant Leaves - genetics | Plant Leaves - growth & development | Mutation | Peas - genetics | Flowers - genetics | Plant Leaves - microbiology
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6. Full Text MtCRE1‐dependent cytokinin signaling integrates bacterial and plant cues to coordinate symbiotic nodule organogenesis in Medicago truncatula
by Plet, Julie and Wasson, Anton and Ariel, Federico and Le Signor, Christine and Baker, David and Mathesius, Ulrike and Crespi, Martin and Frugier, Florian
The Plant Journal, ISSN 0960-7412, 02/2011, Volume 65, Issue 4, pp. 622 - 633
Summary Phytohormonal interactions are essential to regulate plant organogenesis. In response to the presence of signals from symbiotic bacteria, the Nod... 
hormonal interactions | nitrogen fixing nodulation | auxin | EIN2/sickle | ethylene | PIN efflux carrier | ARABIDOPSIS-THALIANA | sickle | EIN2 | HOST SPECIFICITY | GRAS FAMILY | PLANT SCIENCES | AUXIN TRANSPORT | CELL-DIVISION | LOTUS-JAPONICUS | LATERAL ROOT-FORMATION | GENE-EXPRESSION | ERF TRANSCRIPTION FACTOR | RHIZOBIUM-MELILOTI | Symbiosis | Transformation, Genetic | Amino Acid Sequence | Medicago truncatula - genetics | Indoleacetic Acids - metabolism | Signal Transduction | Root Nodules, Plant - microbiology | Molecular Sequence Data | Receptors, Cell Surface - metabolism | Medicago truncatula - microbiology | RNA, Plant - genetics | Medicago truncatula - metabolism | Transcription Factors - metabolism | Plant Proteins - genetics | Plant Root Nodulation - genetics | Gene Expression Regulation, Plant | Cytokinins - metabolism | Plant Proteins - metabolism | Mutation | Plant Growth Regulators - metabolism | Root Nodules, Plant - growth & development | Receptors, Cell Surface - genetics | Legumes | Beans | Fixation | Developmental biology | Analysis | DNA binding proteins | Gene expression | Nitrogen | Mimosaceae | Plant biology | Signal transduction | Bacteria | Plant growth | Transcription factors | Roots | Cortex | Ethylene | Cell division | Nodulation | Nodules | Organogenesis | Cytokinins | Nod factors | Auxins | Differentiation | RNA, Plant | Medicago truncatula | Receptors, Cell Surface | Plant Growth Regulators | Life Sciences | Root Nodules, Plant | Plant Root Nodulation | Transcription Factors | Plant Proteins | Vegetal Biology | Indoleacetic Acids
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7. Full Text Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis
by Griesmann, Maximilian and Chang, Yue and Liu, Xin and Song, Yue and Haberer, Georg and Crook, Matthew B and Billault-Penneteau, Benjamin and Lauressergues, Dominique and Keller, Jean and Imanishi, Leandro and Roswanjaya, Yuda Purwana and Kohlen, Wouter and Pujic, Petar and Battenberg, Kai and Alloisio, Nicole and Liang, Yuhu and Hilhorst, Henk and Salgado, Marco G and Hocher, Valerie and Gherbi, Hassen and Svistoonoff, Sergio and Doyle, Jeff J and He, Shixu and Xu, Yan and Xu, Shanyun and Qu, Jing and Gao, Qiang and Fang, Xiaodong and Fu, Yuan and Normand, Philippe and Berry, Alison M and Wall, Luis G and Ané, Jean-Michel and Pawlowski, Katharina and Xu, Xun and Yang, Huanming and Spannagl, Manuel and Mayer, Klaus F.X and Wong, Gane Ka-Shu and Parniske, Martin and Delaux, Pierre-Marc and Cheng, Shifeng and Stockholms universitet and Institutionen för ekologi, miljö och botanik and Naturvetenskapliga fakulteten
Science, ISSN 0036-8075, 07/2018, Volume 361, Issue 6398, p. eaat1743
The root nodule symbiosis of plants with nitrogen-fixing bacteria affects global nitrogen cycles and food production but is restricted to a subset of genera... 
ORIGINS | NIN | EVOLUTION | GENE | PHYLOGENETIC ANALYSIS | SEQUENCE ALIGNMENT | MULTIDISCIPLINARY SCIENCES | ARBUSCULAR MYCORRHIZA | INFERENCE | GENOME | FIXATION | Fabaceae - classification | Symbiosis | Nitrogen - metabolism | Genomics | Root Nodules, Plant - microbiology | Bacterial Physiological Phenomena | Fabaceae - genetics | Genome, Plant | Phylogeny | Evolution, Molecular | Fabaceae - microbiology | Nitrogen Fixation | Agricultural ecosystems | Ammonium | Terrestrial ecosystems | Biological evolution | Genes | Terrestrial environments | Environmental changes | Genomes | Biodiversity | Gene sequencing | Dietary restrictions | Symbionts | Species diversity | Agrochemicals | Pathways | Nitrogen fixation | Bacteria | Evolution | Nutrients | Flowering | Flowers & plants | Signatures | Legumes | Agricultural chemicals | Plants (botany) | Food production | Fossil fuels | Nitrogen | Agricultural economics | Molecular chains | Fertilizers | Nodules | Plant diversity | Plant growth | Host plants | Nitrogen-fixing bacteria | Comparative analysis | Biological Sciences | Plant Physiology | Naturvetenskap | växtfysiologi | Natural Sciences | Biologiska vetenskaper | Laboratory of Molecular Biology | Laboratory of Plant Physiology | EPS | Laboratorium voor Plantenfysiologie | Laboratorium voor Moleculaire biologie
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8. Full Text RNA-seq transcriptome profiling reveals that Medicago truncatula nodules acclimate N2 fixation before emerging P deficiency reaches the nodules
by Cabeza, Ricardo A and Liese, Rebecca and Lingner, Annika and Von Stieglitz, Ilsabe and Neumann, Janice and Salinas-Riester, Gabriela and Pommerenke, Claudia and Dittert, Klaus and Schulze, Joachim
Journal of Experimental Botany, ISSN 0022-0957, 11/2014, Volume 65, Issue 20, pp. 6035 - 6048
Legume nodules are plant tissues with an exceptionally high concentration of phosphorus (P), which, when there is scarcity of P, is preferentially maintained... 
Legumes | Medicago truncatula | RNA-seq | fixation | nodulation | nitrogen fixation | P stress | Sinorhizobium meliloti | Medicago truncatula - genetics | Sinorhizobium meliloti - physiology | Root Nodules, Plant - microbiology | Transcriptome | Plant Roots - genetics | Root Nodules, Plant - genetics | Medicago truncatula - microbiology | Plant Roots - physiology | Gene Expression Regulation, Plant | Nitrogen Fixation | Symbiosis | Nitrogen - metabolism | Acclimatization | Plant Roots - microbiology | Root Nodules, Plant - physiology | Medicago truncatula - physiology | Plant Proteins - genetics | Phenotype | Sequence Analysis, RNA | Plant Leaves - genetics | Phosphorus - metabolism | Plant Root Nodulation | Phosphorus - deficiency | Plant Leaves - microbiology | Plant Leaves - physiology | N2 fixation | Research Paper
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9. Full Text NODULE INCEPTION creates a long-distance negative feedback loop involved in homeostatic regulation of nodule organ production
by Takashi Soyano and Hideki Hirakawa and Shusei Sato and Makoto Hayashi and Masayoshi Kawaguchi
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 10/2014, Volume 111, Issue 40, pp. 14607 - 14612
Autoregulatory negative-feedback loops play important roles in fine-balancing tissue and organ development. Such loops are composed of short-range... 
Cytokinins | Genes | Plant roots | Control loops | Nodulation | Cell division | Gene expression regulation | Infections | Plants | Nodules | NODULATION | LOTUS-JAPONICUS | STEM-CELL FATE | MEDIATES SYSTEMIC REGULATION | MEDICAGO-TRUNCATULA | MULTIDISCIPLINARY SCIENCES | CLE PEPTIDES | RECEPTOR-LIKE KINASE | ARABIDOPSIS | ROOT DEVELOPMENT | SPLIT-ROOT | Symbiosis | Green Fluorescent Proteins - metabolism | Plant Shoots - microbiology | Root Nodules, Plant - microbiology | Plant Roots - genetics | Root Nodules, Plant - genetics | Loteae - microbiology | Green Fluorescent Proteins - genetics | Signal Transduction - genetics | Plant Roots - microbiology | Reverse Transcriptase Polymerase Chain Reaction | Rhizobium - physiology | Host-Pathogen Interactions | Plant Proteins - genetics | Feedback, Physiological | Plant Root Nodulation - genetics | Plants, Genetically Modified | Gene Expression Regulation, Plant | Mutation | Plant Shoots - genetics | Loteae - genetics | Homeostasis | Botanical research | Research | Biological control systems | Biological Sciences
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10. Full Text Plant Peptides Govern Terminal Differentiation of Bacteria in Symbiosis
by Willem van de Velde and Grigor Zehirov and Agnes Szatmari and Monika Debreczeny and Hironobu Ishihara and Zoltan Kevei and Attila Farkas and Kata Mikulass and Andrea Nagy and Hilda Tiricz and Beatrice Satiat-Jeunemaître and Benoit Alunni and Mickael Bourge and Ken-ichi Kucho and Mikiko Abe and Attila Kereszt and Gergely Maroti and Toshiki Uchiumi and Eva Kondorosi and Peter Mergaert
Science, ISSN 0036-8075, 2/2010, Volume 327, Issue 5969, pp. 1122 - 1126
Legume plants host nitrogen-fixing endosymbiotic Rhizobium bacteria in root nodules. In Medicago truncatula, the bacteria undergo an irreversible (terminal)... 
Symbiosis | Legumes | Polyploidy | B lymphocytes | Antimicrobials | Cell cycle | Bacteria | Reports | Cellular immunity | Bacteroids | Nodules | ORGANIZATION | NODULES | LEGUME SYMBIOSIS | MEDICAGO-TRUNCATULA | MULTIDISCIPLINARY SCIENCES | GENES | CELL-CYCLE | ANTIMICROBIAL PEPTIDES | MODEL | RHIZOBIUM-MELILOTI | Medicago truncatula - genetics | Root Nodules, Plant - metabolism | Sinorhizobium meliloti - drug effects | Genes, Plant | Sinorhizobium meliloti - physiology | Peptides - genetics | Root Nodules, Plant - microbiology | Molecular Sequence Data | Medicago truncatula - microbiology | Peptides - metabolism | Plant Proteins - chemistry | Cell Division | Plants, Genetically Modified | Cell Membrane - metabolism | Plant Proteins - metabolism | Nitrogen Fixation | Amino Acid Sequence | Peptides - chemistry | Loteae - metabolism | Loteae - microbiology | Medicago truncatula - metabolism | Peptides - pharmacology | Protein Transport | Plant Proteins - genetics | Sinorhizobium meliloti - cytology | Cytosol - metabolism | Anti-Bacterial Agents - pharmacology | Loteae - genetics | Host-bacteria relationships | Physiological aspects | Research | Peptides | Plant physiology | Endosymbiosis | Mutation | Botany | Cell Membrane | Medicago truncatula | Lotus | Cytosol | Life Sciences | Anti-Bacterial Agents | Root Nodules, Plant | Plant Proteins | Vegetal Biology | Sinorhizobium meliloti
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11. Full Text A gene expression atlas of the model legume Medicago truncatula
by Benedito, Vagner A and Torres‐Jerez, Ivone and Murray, Jeremy D and Andriankaja, Andry and Allen, Stacy and Kakar, Klementina and Wandrey, Maren and Verdier, Jérôme and Zuber, Hélène and Ott, Thomas and Moreau, Sandra and Niebel, Andreas and Frickey, Tancred and Weiller, Georg and He, Ji and Dai, Xinbin and Zhao, Patrick X and Tang, Yuhong and Udvardi, Michael K
The Plant Journal, ISSN 0960-7412, 08/2008, Volume 55, Issue 3, pp. 504 - 513
Summary Legumes played central roles in the development of agriculture and civilization, and today account for approximately one‐third of the world’s primary... 
Medicago truncatula | development | nodule | seed | transcriptome | Development | Seed | Nodule | Transcriptome | GLOBAL CHANGES | FAMILY | PLANT SCIENCES | NODULATION | ARABIDOPSIS TRANSCRIPTION FACTORS | NITROGEN-FIXATION | ARBUSCULAR MYCORRHIZAL SYMBIOSIS | REGULATORS | RICH | GENOME-WIDE IDENTIFICATION | Symbiosis | Gene Expression | Medicago truncatula - genetics | Plant Roots - metabolism | Root Nodules, Plant - metabolism | Oligonucleotide Array Sequence Analysis | Species Specificity | Genomics | Sinorhizobium meliloti - physiology | Root Nodules, Plant - microbiology | Databases, Genetic | Plant Roots - genetics | Root Nodules, Plant - genetics | Gene Expression Profiling | Medicago truncatula - microbiology | Medicago truncatula - metabolism | Plant Roots - microbiology | RNA, Messenger - metabolism | Plant Leaves - genetics | Plant Leaves - metabolism | Plant Leaves - microbiology | Cluster Analysis | Nitrogen Fixation | Legumes | Beans | Gene expression | Mimosaceae | Analysis | Models | Botany
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12. Full Text Protein carbonylation and glycation in legume nodules
by Matamoros, Manuel A and Kim, Ahyoung and Peñuelas, María and Ihling, Christian and Griesser, Eva and Hoffmann, Ralf and Fedorova, Maria and Frolov, Andrej and Becana, Manuel
Plant Physiology, ISSN 0032-0889, 08/2018, Volume 177, Issue 4, pp. 1510 - 1528
Nitrogen fixation is an agronomically and environmentally important process catalyzed by bacterial nitrogenase within legume root nodules. These unique... 
WHEAT TRITICUM-AESTIVUM | ARABIDOPSIS-THALIANA | LIPID-PEROXIDATION | ROOT-NODULES | SUCROSE SYNTHASE | NITRIC-OXIDE | METAL-CATALYZED OXIDATION | ANTIOXIDANT DEFENSES | TYPE-2 DIABETES-MELLITUS | END-PRODUCTS | PLANT SCIENCES | Malate Dehydrogenase - metabolism | Symbiosis | Protein Carbonylation | Root Nodules, Plant - metabolism | Root Nodules, Plant - microbiology | Nuclear Proteins - metabolism | Plant Proteins - analysis | Malate Dehydrogenase - genetics | Amino Acids - metabolism | Phaseolus - metabolism | Plant Proteins - genetics | Plant Proteins - metabolism | Chromatography, Liquid - methods | Leghemoglobin - metabolism | Tandem Mass Spectrometry - methods | Physiological aspects | Legumes | Beans | Mimosaceae
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13. Full Text Plant cysteine-rich peptides that inhibit pathogen growth and control rhizobial differentiation in legume nodules
by Maróti, Gergely and Downie, J Allan and Kondorosi, Éva
Current Opinion in Plant Biology, ISSN 1369-5266, 08/2015, Volume 26, pp. 57 - 63
Plants must co-exist with both pathogenic and beneficial microbes. Antimicrobial peptides with broad antimicrobial activities represent one of the first lines... 
DEFENSIN-LIKE GENE | TRANSCRIPTOME | MEDICAGO-TRUNCATULA | CELL-CYCLE | ANTIMICROBIAL PEPTIDES | ANTIFUNGAL | IDENTIFICATION | EXPRESSION | GENOME | FAMILY | PLANT SCIENCES | Rhizobium - metabolism | Peptides - metabolism | Peptides - chemistry | Gene Expression Regulation, Plant | Root Nodules, Plant - microbiology | Symbiosis - physiology | Cysteine - chemistry | Rhizobium - physiology | Legumes | Cysteine | Beans | Peptides | Mimosaceae | Cystine | Fixation | Nitrogen
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