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schiff bases (535) 535
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bovine rhodopsin (256) 256
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mutation (103) 103
crystallography (102) 102
binding sites (101) 101
rhodopsin - genetics (101) 101
hydrogen bonding (96) 96
mutagenesis, site-directed (96) 96
crystal structure (93) 93
schiff base (92) 92
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spectrophotometry (84) 84
biochemistry (83) 83
chromophores (81) 81
copper (80) 80
isomerization (80) 80
metarhodopsin-ii (77) 77
structural-changes (75) 75
protein structure, secondary (74) 74
crystals (72) 72
imines (72) 72
chromophore (71) 71
spectroscopy, fourier transform infrared (69) 69
halobacterium-halobium (67) 67
catalysis (65) 65
retinaldehyde - metabolism (65) 65
molecular structure (63) 63
photocycle (60) 60
physiological aspects (60) 60
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retina (60) 60
amino acids (59) 59
purple membrane (59) 59
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1. Full Text Long-distance perturbation on Schiff base-counterion interactions by His30 and the extracellular Na+-binding site in: Krokinobacter rhodopsin 2
by Shigeta, Arisu and Ito, Shota and Kaneko, Rina and Tomida, Sahoko and Inoue, Keiichi and Kandori, Hideki and Kawamura, Izuru
Physical Chemistry Chemical Physics, ISSN 1463-9076, 2018, Volume 20, Issue 13, pp. 8450 - 8455
Krokinobacter rhodopsin 2 (KR2), a light-driven Na+ pump, is a dual-functional protein, pumping protons in the absence of Na+ when K+ or larger alkali metal... 
TRANSPORT | SOLID-STATE NMR | SPECTROSCOPY | CHROMOPHORE | STRUCTURAL BASIS | PHYSICS, ATOMIC, MOLECULAR & CHEMICAL | GREEN PROTEORHODOPSIN | CHEMISTRY, PHYSICAL | SODIUM-ION PUMP | BACTERIORHODOPSIN | LIGHT-DRIVEN NA+ | WATER-MOLECULE | Rhodopsins, Microbial - genetics | Binding Sites | Proton Pumps - genetics | Rhodopsins, Microbial - chemistry | Schiff Bases - chemistry | Protons | Fourier transforms | Nuclear magnetic resonance--NMR | Pumping | Photolysis | Imines | Alkali metals | Perturbation | Binding sites | Strong interactions (field theory) | Metal ions
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2. Full Text Evolutionary steps involving counterion displacement in a tunicate opsin
by Kojima, Keiichi and Yamashita, Takahiro and Imamoto, Yasushi and Kusakabe, Takehiro G and Tsuda, Motoyuki and Shichida, Yoshinori
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 06/2017, Volume 114, Issue 23, pp. 6028 - 6033
Ci-opsin1 is a visible light-sensitive opsin present in the larval ocellus of an ascidian, Ciona intestinalis. This invertebrate opsin belongs to the... 
Molecular evolution | Opsin | G protein-coupled receptors | Ascidian | Counterion | ACTIVATION | VISUAL PIGMENTS | MULTIDISCIPLINARY SCIENCES | opsin | SCHIFF-BASE COUNTERION | GLUTAMIC-ACID | counterion | molecular evolution | PHOTOTRANSDUCTION | ascidian | BOVINE RHODOPSIN | ASCIDIAN CIONA-INTESTINALIS | PROTEIN-COUPLED-RECEPTOR | VERTEBRATE | METARHODOPSIN-II | Biological Sciences
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3. Full Text Counterion Controlled Photoisomerization of Retinal Chromophore Models:  a Computational Investigation
by Cembran, Alessandro and Bernardi, Fernando and Olivucci, Massimo and Garavelli, Marco
Journal of the American Chemical Society, ISSN 0002-7863, 12/2004, Volume 126, Issue 49, pp. 16018 - 16037
CASPT2//CASSCF photoisomerization path computations have been used to unveil the effects of an acetate counterion on the photochemistry of two retinal... 
BOVINE RHODOPSIN | VISUAL PIGMENTS | POTENTIAL-ENERGY SURFACES | SCHIFF-BASE COUNTERION | POINT-CHARGE MODEL | CONICAL INTERSECTION | REACTION-PATH | EXCITED-STATE DYNAMICS | CIS-TRANS PHOTOISOMERIZATION | CHEMISTRY, MULTIDISCIPLINARY | SENSORY RHODOPSIN-II | Chromophores | Structure | Analysis | Isomerization | Chemical models
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4. Full Text Electrostatic Control of the Photoisomerization Efficiency and Optical Properties in Visual Pigments: On the Role of Counterion Quenching
by Tomasello, Gaia and Olaso-González, Gloria and Altoè, Piero and Stenta, Marco and Serrano-Andrés, Luis and Merchán, Manuela and Orlandi, Giorgio and Bottoni, Andrea and Garavelli, Marco
Journal of the American Chemical Society, ISSN 0002-7863, 04/2009, Volume 131, Issue 14, pp. 5172 - 5186
Hybrid QM(CASPT2//CASSCF/6−31G*)/MM(Amber) computations have been used to map the photoisomerization path of the retinal chromophore in Rhodopsin and explore... 
PERTURBATION-THEORY | MOLECULAR-GENETICS | RHODOPSIN FAMILY | RETINYLIDENE SCHIFF-BASE | RETINAL CHROMOPHORE MODEL | ENERGY-STORAGE | GLUTAMIC-ACID | BINDING POCKET | CHEMISTRY, MULTIDISCIPLINARY | PROTEIN-COUPLED-RECEPTOR | HUMAN COLOR-VISION | Protons | Computational Biology - methods | Ions - chemistry | Retina - metabolism | Models, Molecular | Crystallography, X-Ray | Static Electricity | Isomerism | Thermodynamics | Quantum Theory | Animals | Rhodopsin - genetics | Cattle | Mutation | Binding Sites | Color Vision | Photochemistry | Rhodopsin - chemistry | Optical properties | Analysis | Isomerization | Amino acids | Electrostatic interactions | Chromophores | Chemical properties | Structure | Quantum theory
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5. Full Text Aspartate–Histidine Interaction in the Retinal Schiff Base Counterion of the Light-Driven Proton Pump of Exiguobacterium sibiricum
by Balashov, S. P and Petrovskaya, L. E and Lukashev, E. P and Imasheva, E. S and Dioumaev, A. K and Wang, J. M and Sychev, S. V and Dolgikh, D. A and Rubin, A. B and Kirpichnikov, M. P and Lanyi, J. K
Biochemistry, ISSN 0006-2960, 07/2012, Volume 51, Issue 29, pp. 5748 - 5762
One of the distinctive features of eubacterial retinal-based proton pumps, proteorhodopsins, xanthorhodopsin, and others, is hydrogen bonding of the key... 
PHOTOCHEMICAL CYCLE | TRANSITION | TRANSLOCATION | XANTHORHODOPSIN | PROTEORHODOPSIN | CHROMOPHORE | PHOTOISOMERIZATION | BIOCHEMISTRY & MOLECULAR BIOLOGY | BACTERIORHODOPSIN PHOTOCYCLE | RELEASE | Protons | Bacillales - chemistry | Bacterial Proteins - chemistry | Histidine - metabolism | Photochemical Processes | Aspartic Acid - genetics | Rhodopsins, Microbial - metabolism | Cloning, Molecular | Bacillales - genetics | Rhodopsins, Microbial - genetics | Bacterial Proteins - genetics | Histidine - genetics | Models, Molecular | Spectrometry, Fluorescence | Escherichia coli - genetics | Schiff Bases - chemistry | Aspartic Acid - metabolism | Bacillales - metabolism | Bacterial Proteins - metabolism | Schiff Bases - metabolism | Aspartic Acid - chemistry | Kinetics | Mutation | Histidine - chemistry | Rhodopsins, Microbial - chemistry | Schiff bases | Histidine | Analysis | Emission | Aspartate | Absorption of light | Chemical properties | Hydrogen bonding | Protein-protein interactions | Electrons
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6. Full Text Construction of Chiral [4 + 4] and [2 + 2] Schiff-Base Macrocyclic Zinc(II) Complexes Influenced by Counterions and Pendant Arms
by Hu, Yong and Zhang, Lei and Chang, Fei-Fan and Zhao, Pei-Chen and Feng, Gen-Feng and Zhang, Kun and Huang, Wei
Inorganic Chemistry, ISSN 0020-1669, 09/2016, Volume 55, Issue 17, pp. 8260 - 8262
Chiral and racemic 68-membered [4 + 4] tetranuclear and 34-membered [2 + 2] dinuclear Schiff-base macrocyclic zinc­(II) complexes 1–10 can be selectively... 
RECOGNITION | PSEUDOPEPTIDIC MACROCYCLES | EXPANSION | ION | DYNAMIC COMBINATORIAL CHEMISTRY | TEMPLATE | CHEMISTRY, INORGANIC & NUCLEAR | Schiff bases | Zinc compounds | Chemical properties | Chirality | Analysis
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7. Full Text Retinal Counterion Switch in the Photoactivation of the G Protein-Coupled Receptor Rhodopsin
by Elsa C. Y. Yan and Manija A. Kazmi and Ziad Ganim and Jian-Min Hou and Douhai Pan and Belinda S. W. Chang and Thomas P. Sakmar and Richard A. Mathies
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 8/2003, Volume 100, Issue 16, pp. 9262 - 9267
The biological function of Glu-181 in the photoactivation process of rhodopsin is explored through spectroscopic studies of site-specific mutants. Preresonance... 
Protons | Biological Sciences | Receptors | Wavelengths | Retinal pigments | Disulfides | Pigments | Biochemistry | Chromophores | Absorption spectra | Electrostatics | CYTOPLASMIC SURFACE | CYSTEINE RESIDUE-110 | CHROMOPHORE BINDING-SITE | BOVINE RHODOPSIN | VISUAL PIGMENTS | MULTIDISCIPLINARY SCIENCES | SCHIFF-BASE COUNTERION | DISULFIDE BOND | GLUTAMIC-ACID | RETINITIS-PIGMENTOSA | METARHODOPSIN-II | GTP-Binding Proteins - physiology | Retina - metabolism | Temperature | Mutagenesis, Site-Directed | GTP-Binding Proteins - chemistry | Models, Chemical | Models, Molecular | Ions | Animals | Rhodopsin - analogs & derivatives | Ultraviolet Rays | Cattle | Light | Protein Binding | Spectrum Analysis, Raman | Rhodopsin - physiology | Glutamic Acid - chemistry | Hydrogen-Ion Concentration | Rhodopsin - chemistry | Molecules | Biology | Research
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8. Full Text Counterion displacement in the molecular evolution of the rhodopsin family
by Shichida, Yoshinori and Miyata, Takashi and Tsukamoto, Hisao and Terakita, Akihisa and Koyanagi, Mitsumasa and Yamashita, Takahiro
Nature Structural & Molecular Biology, ISSN 1545-9993, 03/2004, Volume 11, Issue 3, pp. 284 - 289
The counterion, a negatively charged amino acid residue that stabilizes a positive charge on the retinylidene chromophore, is essential for rhodopsin to... 
RETINOCHROME | NEUROTRANSMITTER RECEPTORS | BIOCHEMISTRY & MOLECULAR BIOLOGY | LIGHT | OPSIN | INVERTEBRATE VISUAL PIGMENTS | CELL BIOLOGY | COLOR-VISION | BIOPHYSICS | BOVINE RHODOPSIN | SCHIFF-BASE | PROTEIN-COUPLED-RECEPTOR | VERTEBRATE | Glutamic Acid | Anions | Animals | Mutagenesis, Site-Directed | Rhodopsin - genetics | Retinoids - chemistry | Phylogeny | Amino Acids, Acidic - chemistry | Evolution, Molecular | GTP-Binding Proteins - metabolism | Rhodopsin - chemistry | Physiological aspects | Rhodopsin | Research | G proteins | Glutamate | Structure
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9. Full Text Retinal Counterion Switch Mechanism in Vision Evaluated by Molecular Simulations
by Martínez-Mayorga, Karina and Pitman, Michael C and Grossfield, Alan and Feller, Scott E and Brown, Michael F
Journal of the American Chemical Society, ISSN 0002-7863, 12/2006, Volume 128, Issue 51, pp. 16502 - 16503
Photoisomerization of the retinylidene chromophore of rhodopsin is the starting point in the vision cascade. A counterion switch mechanism that stabilizes the... 
ACTIVATION | PERSPECTIVE | RHODOPSIN | DYNAMICS | METARHODOPSIN-I | NMR STRUCTURE | STATE | CRYSTALLOGRAPHY | PHOTOACTIVATION | CHEMISTRY, MULTIDISCIPLINARY | PROTEIN-COUPLED-RECEPTOR | Thermodynamics | Magnetic Resonance Spectroscopy - methods | Models, Biological | Vision, Ocular | Computer Simulation | Schiff Bases - chemistry | Sensitivity and Specificity | Molecular Structure | Rhodopsin - chemical synthesis | Rhodopsin - chemistry | Molecular dynamics | Schiff bases | Rhodopsin | Chemical properties | Analysis
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10. Full Text How the Binding of Substrates to a Chiral Polyborate Counterion Governs Diastereoselection in an Aziridination Reaction: H-Bonds in Equipoise
by Vetticatt, Mathew J and Desai, Aman A and Wulff, William D
Journal of the American Chemical Society, ISSN 0002-7863, 09/2010, Volume 132, Issue 38, pp. 13104 - 13107
The stereochemistry-determining step of the self-assembled chiral Brønsted acid-catalyzed aziridination reactions of MEDAM imines and three representative... 
ACID | MECHANISM | IMINES | ACYLDIAZOMETHANES | CONDENSATION | ALDEHYDES | CHEMISTRY, MULTIDISCIPLINARY | CATALYTIC ASYMMETRIC AZIRIDINATION | DIAZOACETAMIDES | Boron Compounds - chemistry | Models, Molecular | Catalysis | Hydrogen Bonding | Aziridines - chemistry | Stereoisomerism | Diazo compounds | Schiff bases | Analysis | Chirality | Chemical properties | Structure | Hydrogen bonding
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11. Full Text Slow magnetic relaxation in Cu-Ln heterometallic Schiff base complexes containing Ln(hfac)4− as counterions
by Wang, Kang and Zhang, Junqing and Lu, Jiao and Jing, Pei and Li, Licun
Inorganica Chimica Acta, ISSN 0020-1693, 05/2019, Volume 490, pp. 51 - 56
The first Cu-Ln Schiff base complexes containing [Ln( -diketone) ] blocks have been obtained and the Cu-Tb complex exhibits slow magnetic relaxation behavior.... 
Schiff base | Slow magnetic relaxation | Heterometallic complexes | Ln(hfac)4 | Protons | Magnetic induction | Imines | Magnetic relaxation | Gadolinium | Ferromagnetism | Structural analysis | Magnetic measurement
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12. Full Text Slow magnetic relaxation in Cu-Ln heterometallic Schiff base complexes containing Ln(hfac)(4)(-) as counterions
by Wang, K and Zhang, JQ and Lu, J and Jing, P and Li, LC
INORGANICA CHIMICA ACTA, ISSN 0020-1693, 05/2019, Volume 490, pp. 51 - 56
Two novel heterometallic Cu-Ln Schiff base complexes {[Ln(hfac)(2)Cu(L)(H2O)][Ln(hfac)(4)][CuL]}(Ln(III) = Gd 1, Tb 2, hfac = hexafluoroacetylacetone; H2L =... 
GD-III | SINGLE-MOLECULE-MAGNET | TB-III | Ln(hfac)(-) | BEHAVIOR | ANISOTROPY | CHEMISTRY, INORGANIC & NUCLEAR | Schiff base | STRUCTURAL DETERMINATION | Slow magnetic relaxation | CO-II | LANTHANIDE | TRINUCLEAR | Heterometallic complexes
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13. Full Text Structure and electrochemistry of salen type cerium (IV) complexes tuned by multiform counterions
by Chen, Han and Chen, Chuan and Yan, Pengfei and Hou, Guangfeng and Li, Guangming
Inorganica Chimica Acta, ISSN 0020-1693, 08/2013, Volume 405, pp. 182 - 187
Three new salen type Ce(IV) complexes, have been synthesized and structurally determined. Their electrochemical properties are investigated and discussed.... 
Electrochemistry | Synthesis | Salen type | Structure | Mononuclear cerium complexes | SINGLE-MOLECULE MAGNET | 3D-4F COMPLEXES | CRYSTAL-STRUCTURE | COORDINATION | CHEMISTRY, INORGANIC & NUCLEAR | NEAR-INFRARED NIR | SENSITIZED LUMINESCENCE | LN(SALEN) | SLOW MAGNETIC-RELAXATION | SCHIFF-BASE COMPLEXES | Cerium | Electrochemical reactions
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14. Full Text Complete-active-space self-consistent-field/Amber parameterization of the Lys296–retinal–Glu113 rhodopsin chromophore-counterion system
by Ferré, Nicolas and Cembran, Alessandro and Garavelli, Marco and Olivucci, Massimo
Theoretical Chemistry Accounts, ISSN 1432-881X, 09/2004, Volume 112, Issue 4, pp. 335 - 341
A special hybrid quantum mechanics/molecular mechanics forcefield is defined, parameterized and validated for studying the photoisomerization path of the... 
Chemistry | Rhodopsin | Quantum mechanics/Molecular mechanics | Parameterization | Photoisomerization | Retinal | rhodopsin | retinal | quantum mechanics | molecular mechanics | RESP | CHARGES | photoisomerization | parameterization | CHEMISTRY, PHYSICAL | PROTONATED SCHIFF-BASE | MODEL | SIMULATIONS
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15. Full Text Photosensitivities of Rhodopsin Mutants with a Displaced Counterion
by Tsutsui, Kei and Shichida, Yoshinori
Biochemistry, ISSN 0006-2960, 11/2010, Volume 49, Issue 47, pp. 10089 - 10097
Visual pigments consist of a protein moiety opsin and an 11-cis-retinal chromophore that is covalently bound to the opsin via a Schiff base linkage. They have... 
ACTIVATION | CONGENITAL NIGHT BLINDNESS | BOVINE RHODOPSIN | CHROMOPHORE | VISUAL PIGMENTS | PHOTOISOMERIZATION | BIOCHEMISTRY & MOLECULAR BIOLOGY | SCHIFF-BASE COUNTERION | LUMI-RHODOPSIN | META-RHODOPSIN | DROSOPHILA RHODOPSIN | Amino Acid Sequence | Animals | Rhodopsin - genetics | Cattle | Drug Stability | Schiff Bases - chemistry | Models, Molecular | Mutation | Rhodopsin - radiation effects | Spectrophotometry, Ultraviolet | Amino Acid Substitution | Rhodopsin - chemistry | Schiff bases | Rhodopsin | Amines | Isomerization | Analysis | Chemical properties | Structure
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16. Full Text Slow magnetic relaxation in Cu-Ln heterometallic Schiff base complexes containing Ln.sub.4 .sup.- as counterions
by Wang, Kang and Zhang, Junqing and Lu, Jiao and Jing, Pei and Li, Licun
Inorganica Chimica Acta, ISSN 0020-1693, 05/2019, Volume 490, p. 51
Two novel heterometallic Cu-Ln Schiff base complexes {[Ln(hfac).sub.2Cu(L)(H.sub.2O)][Ln(hfac).sub.4][CuL]}(Ln.sup.III = Gd 1, Tb 2, hfac =... 
Schiff bases | Analysis | Ferromagnetism
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17. Full Text Multiple functions of Schiff base counterion in rhodopsins
by Tsutsui, Kei and Shichida, Yoshinori
Photochemical and Photobiological Sciences, ISSN 1474-905X, 11/2010, Volume 9, Issue 11, pp. 1426 - 1434
In rhodopsins, visible-light absorption is achieved by the protonation of the chromophore Schiff base. The Schiff base proton is stabilized by the negative... 
SQUID RHODOPSIN | PHOTOISOMERIZATION EFFICIENCY | CONGENITAL NIGHT BLINDNESS | BIOCHEMISTRY & MOLECULAR BIOLOGY | GLUTAMIC-ACID 181 | CHEMISTRY, PHYSICAL | INVERTEBRATE VISUAL PIGMENTS | BIOPHYSICS | CHROMOPHORES IN-VACUO | BOVINE RHODOPSIN | RETINAL CHROMOPHORE | HYDROGEN-BOND NETWORK | PROTEIN-COUPLED-RECEPTOR | Protons | Ions - chemistry | Animals | Opsins - chemistry | Cattle | Schiff Bases - chemistry | Models, Molecular | Isomerism | Photochemistry | Rhodopsin - chemistry
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18. Full Text Comparison of the synergistic effect of counterions on the inhibition of mild steel corrosion in acid solution: Electrochemical, gravimetric and thermodynamic studies
by Bai, Li and Feng, La-Jun and Wang, Hong-Yan and Lu, Yong-Bin and Lei, Xiao-Wei and Bai, Fang-Lin
RSC Advances, ISSN 2046-2069, 2015, Volume 5, Issue 6, pp. 4716 - 4726
Quinoline quaternary ammonium salts 1-benzylquinoline bromide (1) and 1-benzylquinoline chloride (2) have been synthesized and then developed as corrosion... 
GEMINI SURFACTANT | ALUMINUM-ALLOY | COLD-ROLLED STEEL | M HYDROCHLORIC-ACID | METAL DISSOLUTION | SULFURIC-ACID | SCHIFF-BASE | IODIDE-IONS | ADSORPTION PROCESSES | CHEMISTRY, MULTIDISCIPLINARY | 0.5 M H2SO4
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19. Comparison of the synergistic effect of counterions on the inhibition of mild steel corrosion in acid solution: electrochemical, gravimetric and thermodynamic studies
by Bai, Li and Feng, La-Jun and Wang, Hong-Yan and Lu, Yong-Bin and Lei, Xiao-Wei and Bai, Fang-Lin
RSC Advances, 12/2014, Volume 5, Issue 6, pp. 4716 - 4726
Quinoline quaternary ammonium salts 1-benzylquinoline bromide (1) and 1-benzylquinoline chloride (2) have been synthesized and then developed as corrosion... 
Thermodynamics | Corrosion inhibitors | Corrosion | Chlorides | Corrosion effects | Carbon steels | Inhibition | Protective coatings | Gravimeters
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20. Full Text The mutation p.E113K in the Schiff base counterion of rhodopsin is associated with two distinct retinal phenotypes within the same family
by Reiff, Charlotte and Owczarek-Lipska, Marta and Spital, Georg and Röger, Carsten and Hinz, Hebke and Jüschke, Christoph and Thiele, Holger and Altmüller, Janine and Nürnberg, Peter and Da Costa, Romain and Neidhardt, John
Scientific Reports, ISSN 2045-2322, 11/2016, Volume 6, Issue 1, p. 36208
The diagnoses of retinitis pigmentosa (RP) and stationary night blindness (CSNB) are two distinct clinical entities belonging to a group of clinically and... 
Amino Acid Sequence | Humans | Middle Aged | Retinitis Pigmentosa - genetics | Male | Mutation, Missense | Night Blindness - diagnostic imaging | Retinitis Pigmentosa - diagnostic imaging | Sequence Analysis, DNA | Case-Control Studies | Phenotype | Rhodopsin - genetics | DNA Mutational Analysis | Pedigree | Aged, 80 and over | Adult | Female | Heterozygote | Schiff Bases | Night Blindness - genetics | Amino Acid Substitution | Rhodopsin - chemistry | Rhodopsin | Retinitis pigmentosa | Blindness | Retina | Retinitis | Mutation | Nyctalopia | Stationary night blindness
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